Wall clock time and date at job start Fri Apr 10 2020 17:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46947 * 2 1 4 4 C 1.46498 * 120.00113 * 275.00198 * 3 2 1 5 5 C 1.50696 * 109.46977 * 274.99853 * 4 3 2 6 6 H 1.08009 * 120.00473 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00054 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99938 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46865 * 60.00400 * 9 7 5 11 11 H 1.48504 * 109.46785 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47311 * 300.00205 * 9 7 5 13 13 S 1.65605 * 119.99620 * 95.00138 * 3 2 1 14 14 O 1.42096 * 106.39915 * 156.46029 * 13 3 2 15 15 O 1.42100 * 106.40207 * 23.54008 * 13 3 2 16 16 N 1.65600 * 107.21882 * 269.99685 * 13 3 2 17 17 C 1.47422 * 125.65212 * 269.96235 * 16 13 3 18 18 C 1.54907 * 104.83537 * 204.16505 * 17 16 13 19 19 C 1.55158 * 101.57757 * 322.98709 * 18 17 16 20 20 H 1.08997 * 110.87397 * 277.06717 * 19 18 17 21 21 C 1.53006 * 110.71976 * 153.86689 * 19 18 17 22 22 H 1.08996 * 109.46884 * 191.48312 * 21 19 18 23 23 C 1.52997 * 109.47127 * 71.47560 * 21 19 18 24 24 O 1.42906 * 109.46748 * 311.47542 * 21 19 18 25 25 C 1.47025 * 125.64663 * 89.99838 * 16 13 3 26 26 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47358 * 299.99586 * 1 2 3 28 28 H 1.08998 * 109.47366 * 59.99664 * 1 2 3 29 29 H 1.09001 * 109.46836 * 240.00358 * 2 1 3 30 30 H 1.08998 * 109.47366 * 120.00336 * 2 1 3 31 31 H 1.08993 * 109.47171 * 35.00231 * 4 3 2 32 32 H 1.09006 * 109.47086 * 155.00461 * 4 3 2 33 33 H 0.96993 * 119.99735 * 179.97438 * 8 7 5 34 34 H 1.09006 * 110.36244 * 323.00298 * 17 16 13 35 35 H 1.09009 * 110.36722 * 85.21133 * 17 16 13 36 36 H 1.09000 * 111.00566 * 204.91495 * 18 17 16 37 37 H 1.08997 * 111.00620 * 81.05865 * 18 17 16 38 38 H 1.09002 * 109.47153 * 180.02562 * 23 21 19 39 39 H 1.09001 * 109.46832 * 60.00321 * 23 21 19 40 40 H 1.09004 * 109.47261 * 300.00303 * 23 21 19 41 41 H 0.96698 * 113.99401 * 179.97438 * 24 21 19 42 42 H 1.09007 * 109.87824 * 59.49082 * 25 16 13 43 43 H 1.08998 * 110.01552 * 298.39740 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7890 -1.8823 6 1 4.1721 1.1112 -1.3839 7 6 3.8524 2.3608 -3.0848 8 7 3.0275 3.1857 -3.6920 9 14 5.5095 1.9649 -3.8510 10 1 5.6003 0.5049 -4.1069 11 1 5.6512 2.7022 -5.1323 12 1 6.5943 2.3732 -2.9228 13 16 2.4122 2.1202 1.4288 14 8 3.3283 3.1570 1.1050 15 8 2.7095 1.0798 2.3499 16 7 1.0431 2.8642 1.9896 17 6 0.6298 4.2460 1.6846 18 6 -0.2871 4.6553 2.8642 19 6 -1.0370 3.3276 3.1509 20 1 -1.8841 3.2064 2.4757 21 6 -1.4970 3.2696 4.6090 22 1 -1.8353 2.2603 4.8434 23 6 -2.6479 4.2553 4.8203 24 8 -0.4079 3.6180 5.4662 25 6 0.0389 2.2562 2.8747 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3617 1.8099 -1.9452 32 1 2.0921 3.1804 -1.0755 33 1 3.2793 3.5882 -4.5377 34 1 1.5002 4.9003 1.6360 35 1 0.0787 4.2785 0.7446 36 1 -0.9821 5.4398 2.5649 37 1 0.3018 4.9656 3.7273 38 1 -2.9753 4.2143 5.8592 39 1 -3.4785 3.9895 4.1664 40 1 -2.3095 5.2646 4.5858 41 1 -0.6280 3.6026 6.4076 42 1 0.5064 1.9505 3.8108 43 1 -0.4141 1.3929 2.3875 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336945096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:31 Heat of formation + Delta-G solvation = -157.295754 kcal Electronic energy + Delta-G solvation = -25118.219760 eV Core-core repulsion = 21516.890271 eV Total energy + Delta-G solvation = -3601.329490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10772 -38.36600 -37.69909 -37.43245 -36.90387 -34.73432 -32.99590 -31.59171 -30.52940 -29.51729 -28.51359 -24.96862 -24.09231 -23.50294 -23.11142 -20.98782 -19.88791 -19.08431 -18.41848 -18.35443 -18.00015 -17.31245 -16.70890 -16.28224 -15.75296 -15.52980 -15.14689 -14.92676 -14.76484 -14.64541 -14.18831 -13.95142 -13.83918 -13.59530 -13.39931 -13.36278 -13.19501 -13.18122 -13.08446 -12.79563 -12.71340 -12.63291 -12.42992 -12.22786 -12.21823 -12.02482 -11.78861 -11.64773 -11.53968 -11.36331 -10.72784 -10.60733 -9.98674 -9.81290 -8.21476 -6.33374 -0.41341 1.37413 1.41411 1.48443 2.02024 2.38795 2.56891 3.08993 3.17778 3.42598 3.60877 3.82299 3.85235 3.99652 4.28636 4.30271 4.40747 4.44708 4.47353 4.49532 4.57266 4.63873 4.74519 4.88451 4.97367 5.00025 5.02054 5.07905 5.11465 5.12764 5.15119 5.19910 5.37994 5.42444 5.43545 5.50424 5.57518 5.70365 5.97256 6.10357 6.74018 7.03330 7.35170 8.85942 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.004231 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.278541 B = 6615.536794 C = 6772.544677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.996 5.996 4 C 0.278 3.722 5 C -0.553 4.553 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.922 5.922 9 Si 0.955 3.045 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.279 1.279 13 S 2.803 3.197 14 O -1.010 7.010 15 O -1.008 7.008 16 N -1.017 6.017 17 C 0.107 3.893 18 C -0.107 4.107 19 C -0.088 4.088 20 H 0.118 0.882 21 C 0.109 3.891 22 H 0.070 0.930 23 C -0.178 4.178 24 O -0.585 6.585 25 C 0.118 3.882 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.268 0.732 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.392 0.608 42 H 0.062 0.938 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 -0.502 15.691 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.837 5.837 4 C 0.154 3.846 5 C -0.592 4.592 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.205 1.205 13 S 2.814 3.186 14 O -0.994 6.994 15 O -0.992 6.992 16 N -0.859 5.859 17 C -0.018 4.018 18 C -0.146 4.146 19 C -0.107 4.107 20 H 0.136 0.864 21 C 0.050 3.950 22 H 0.088 0.912 23 C -0.235 4.235 24 O -0.394 6.394 25 C -0.007 4.007 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.242 0.758 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.851 -0.402 15.334 21.351 hybrid contribution 0.654 -0.065 -0.440 0.791 sum -14.197 -0.467 14.895 20.582 Atomic orbital electron populations 1.22239 0.94254 1.03457 1.02196 1.21394 0.95709 0.81411 1.03305 1.57718 1.81505 1.22618 1.21855 1.18525 0.95774 0.90093 0.80188 1.21810 1.03395 1.27858 1.06153 0.93270 1.25722 1.00853 0.94636 0.97316 1.69993 1.37721 1.30803 1.17636 0.85658 0.79671 0.78999 0.77691 1.18778 1.19853 1.20487 1.00923 0.73058 0.72165 0.72404 1.93543 1.61666 1.59340 1.84821 1.93473 1.83963 1.58179 1.63603 1.58915 1.41216 1.23599 1.62163 1.22208 0.99003 0.80810 0.99788 1.22688 0.97798 0.97502 0.96587 1.22438 0.97570 0.94052 0.96681 0.86447 1.21694 0.86394 0.98196 0.88686 0.91166 1.22435 0.98089 0.99879 1.03128 1.86547 1.38630 1.92563 1.21629 1.21988 0.88991 0.96771 0.92958 0.89133 0.91989 0.92893 0.90658 0.90050 0.95278 0.96964 0.92313 0.92267 0.91022 0.87771 0.90558 0.91111 0.90499 0.92196 0.75834 0.91982 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 10.24 71.98 0.74 -3.67 16 2 C 0.11 3.83 6.40 86.38 0.55 4.38 16 3 N -1.00 -43.70 2.82 -519.85 -1.47 -45.17 16 4 C 0.28 14.59 5.10 85.63 0.44 15.02 16 5 C -0.55 -32.38 9.38 25.60 0.24 -32.14 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.84 5.46 84.66 0.46 1.30 16 8 N -0.92 -54.83 13.29 21.45 0.28 -54.55 16 9 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 S 2.80 122.94 6.31 -56.49 -0.36 122.58 16 14 O -1.01 -53.53 16.43 -128.00 -2.10 -55.63 16 15 O -1.01 -45.43 16.27 -128.00 -2.08 -47.52 16 16 N -1.02 -34.20 3.76 -506.41 -1.90 -36.11 16 17 C 0.11 3.19 7.10 86.85 0.62 3.81 16 18 C -0.11 -2.26 5.86 31.99 0.19 -2.08 16 19 C -0.09 -1.59 2.79 -9.60 -0.03 -1.61 16 20 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 21 C 0.11 1.49 3.24 30.60 0.10 1.59 16 22 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 23 C -0.18 -1.64 9.43 71.98 0.68 -0.96 16 24 O -0.59 -9.97 11.51 -148.98 -1.71 -11.68 16 25 C 0.12 3.01 6.51 86.73 0.56 3.58 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.51 5.64 -2.39 -0.01 1.49 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 2.79 8.11 -2.39 -0.02 2.77 16 30 H 0.08 2.78 6.91 -2.39 -0.02 2.77 16 31 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16 32 H 0.01 0.70 7.61 -2.38 -0.02 0.68 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.06 2.00 7.78 -2.38 -0.02 1.98 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.82 6.99 -2.39 -0.02 1.80 16 38 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.06 0.65 7.69 -2.38 -0.02 0.63 16 41 H 0.39 3.27 9.08 -74.06 -0.67 2.60 16 42 H 0.06 1.73 7.44 -2.38 -0.02 1.71 16 43 H 0.08 1.70 5.64 -2.39 -0.01 1.69 16 Total: -1.00 -77.37 355.02 -2.44 -79.81 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.33 Total: 11.42 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 4.55 Total: -10.79 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -3.09 Total: -135.82 kcal Atomic # 8 Polarization: -108.94 SS G_CDS: -5.90 Total: -114.84 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 122.94 SS G_CDS: -0.36 Total: 122.58 kcal Total: -77.37 -2.44 -79.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336945096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.484 kcal (2) G-P(sol) polarization free energy of solvation -77.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds