Wall clock time and date at job start Fri Apr 10 2020 17:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47149 * 2 1 4 4 C 1.46501 * 119.99926 * 274.99660 * 3 2 1 5 5 C 1.50695 * 109.47102 * 275.00043 * 4 3 2 6 6 H 1.08001 * 119.99775 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99901 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47108 * 60.00023 * 9 7 5 11 11 H 1.48499 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47274 * 299.99958 * 9 7 5 13 13 S 1.65598 * 119.99992 * 94.99463 * 3 2 1 14 14 O 1.42100 * 106.40461 * 336.46293 * 13 3 2 15 15 O 1.42100 * 106.40353 * 203.54110 * 13 3 2 16 16 N 1.65601 * 107.21580 * 90.00240 * 13 3 2 17 17 C 1.47486 * 125.59431 * 270.03885 * 16 13 3 18 18 C 1.54323 * 107.03754 * 180.99171 * 17 16 13 19 19 C 1.55153 * 103.10236 * 22.24109 * 18 17 16 20 20 H 1.09003 * 111.00505 * 82.48412 * 19 18 17 21 21 C 1.53000 * 111.00844 * 206.29737 * 19 18 17 22 22 O 1.42902 * 109.46990 * 293.54789 * 21 19 18 23 23 C 1.42900 * 113.99817 * 179.97438 * 22 21 19 24 24 C 1.47428 * 125.64841 * 89.99861 * 16 13 3 25 25 H 1.09004 * 109.47269 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47146 * 300.00102 * 1 2 3 27 27 H 1.09000 * 109.47232 * 60.00304 * 1 2 3 28 28 H 1.08994 * 109.47474 * 239.99468 * 2 1 3 29 29 H 1.09003 * 109.46530 * 119.99539 * 2 1 3 30 30 H 1.09005 * 109.46753 * 35.00451 * 4 3 2 31 31 H 1.08998 * 109.46855 * 154.99691 * 4 3 2 32 32 H 0.97000 * 120.00381 * 179.97438 * 8 7 5 33 33 H 1.09000 * 110.02886 * 61.62521 * 17 16 13 34 34 H 1.09005 * 109.96368 * 300.31378 * 17 16 13 35 35 H 1.09002 * 110.72057 * 263.78860 * 18 17 16 36 36 H 1.09003 * 110.71837 * 140.69433 * 18 17 16 37 37 H 1.09003 * 109.46683 * 53.54519 * 21 19 18 38 38 H 1.08995 * 109.47382 * 173.54127 * 21 19 18 39 39 H 1.08999 * 109.47011 * 60.00459 * 23 22 21 40 40 H 1.09001 * 109.47056 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47168 * 299.99520 * 23 22 21 42 42 H 1.09000 * 110.36462 * 37.09259 * 24 16 13 43 43 H 1.08996 * 110.46287 * 274.81339 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8822 6 1 4.1724 1.1116 -1.3834 7 6 3.8530 2.3613 -3.0843 8 7 3.0281 3.1862 -3.6915 9 14 5.5101 1.9653 -3.8504 10 1 5.6005 0.5055 -4.1073 11 1 5.6518 2.7026 -5.1317 12 1 6.5949 2.3726 -2.9217 13 16 2.4120 2.1202 1.4287 14 8 1.6867 1.4415 2.4448 15 8 2.3056 3.5186 1.1998 16 7 4.0143 1.8137 1.7138 17 6 4.5479 0.6578 2.4582 18 6 6.0835 0.8086 2.4875 19 6 6.2922 2.3278 2.2516 20 1 6.1783 2.8868 3.1805 21 6 7.6558 2.6017 1.6140 22 8 8.6909 2.2644 2.5398 23 6 10.0116 2.4834 2.0401 24 6 5.1422 2.6503 1.2650 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.3617 1.8097 -1.9453 31 1 2.0922 3.1802 -1.0756 32 1 3.2802 3.5893 -4.5369 33 1 4.2760 -0.2692 1.9534 34 1 4.1561 0.6571 3.4754 35 1 6.5434 0.2275 1.6882 36 1 6.4818 0.5106 3.4574 37 1 7.7633 1.9978 0.7129 38 1 7.7302 3.6577 1.3546 39 1 10.1351 3.5370 1.7893 40 1 10.7393 2.2040 2.8019 41 1 10.1678 1.8768 1.1480 42 1 4.8778 3.7061 1.3226 43 1 5.4305 2.3871 0.2473 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337064489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:43 Heat of formation + Delta-G solvation = -125.689934 kcal Electronic energy + Delta-G solvation = -25122.959529 eV Core-core repulsion = 21523.000571 eV Total energy + Delta-G solvation = -3599.958958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.82606 -37.20332 -36.65548 -36.00448 -35.19517 -32.73095 -31.63424 -29.93979 -29.25226 -27.02637 -26.60732 -24.68065 -23.12713 -22.14636 -21.57166 -20.35094 -18.42246 -17.23323 -16.95481 -16.65343 -16.29453 -15.96725 -15.52653 -15.38913 -14.69930 -14.41974 -13.95117 -13.61015 -13.37753 -13.27248 -12.94819 -12.83389 -12.62006 -12.08115 -12.03606 -11.96666 -11.68432 -11.56491 -11.51199 -11.34206 -11.17739 -11.07208 -10.99881 -10.92226 -10.74759 -10.54100 -10.49416 -10.40563 -10.06727 -9.78845 -9.71155 -8.62522 -8.50373 -8.05577 -6.12989 -4.19442 1.24461 3.20986 3.27603 3.28251 3.47555 3.67618 4.14035 4.32930 4.62459 4.71719 4.92606 5.08700 5.20101 5.21810 5.22546 5.36663 5.44739 5.45330 5.47969 5.53754 5.67035 5.73877 5.77767 5.81867 5.83550 5.98922 6.09452 6.14203 6.21352 6.31241 6.40989 6.51630 6.63154 6.66917 6.79417 7.07689 7.35290 7.44672 7.66108 7.84451 8.14534 8.85184 9.45954 10.95074 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.007002 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.259778 B = 3997.760102 C = 5919.244184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 S 2.799 3.201 14 O -0.995 6.995 15 O -0.976 6.976 16 N -1.016 6.016 17 C 0.123 3.877 18 C -0.116 4.116 19 C -0.098 4.098 20 H 0.089 0.911 21 C 0.070 3.930 22 O -0.391 6.391 23 C 0.032 3.968 24 C 0.129 3.871 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 -4.783 9.691 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 S 2.809 3.191 14 O -0.979 6.979 15 O -0.960 6.960 16 N -0.854 5.854 17 C -0.003 4.003 18 C -0.154 4.154 19 C -0.118 4.118 20 H 0.107 0.893 21 C -0.007 4.007 22 O -0.310 6.310 23 C -0.065 4.065 24 C 0.003 3.997 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.983 -4.203 10.224 13.075 hybrid contribution 1.318 -0.332 -1.242 1.841 sum 8.300 -4.534 8.982 13.044 Atomic orbital electron populations 1.22205 0.96911 1.01388 1.02390 1.20970 0.93669 0.82963 1.02007 1.57813 1.78185 1.22948 1.24314 1.19183 0.97284 0.92212 0.79013 1.21514 1.02245 1.27967 1.06025 0.91998 1.24950 0.97155 0.94879 0.96880 1.69920 1.35969 1.29735 1.17111 0.86662 0.84188 0.78466 0.78677 1.20256 1.21215 1.20150 1.01341 0.71693 0.73300 0.72777 1.93530 1.70063 1.76562 1.57763 1.93566 1.85561 1.30813 1.86042 1.59166 1.23603 1.34360 1.68310 1.21716 0.94255 0.88419 0.95891 1.22586 0.94447 0.95666 1.02733 1.22332 0.92401 0.97313 0.99732 0.89252 1.22480 0.86679 0.99651 0.91912 1.87844 1.14334 1.87441 1.41365 1.22717 0.84210 0.99874 0.99676 1.21880 0.84563 0.95312 0.97919 0.92338 0.92660 0.92065 0.90275 0.92045 0.94404 0.93216 0.92536 0.91961 0.91577 0.90707 0.90243 0.92577 0.92748 0.94138 0.89855 0.94088 0.90044 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.30 6.06 -4.04 -0.02 2.27 16 3 N -0.99 -20.66 2.82 -115.67 -0.33 -20.98 16 4 C 0.25 6.05 5.43 -5.20 -0.03 6.02 16 5 C -0.54 -13.78 9.38 -34.44 -0.32 -14.10 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 9 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 13 S 2.80 57.38 6.31 -107.50 -0.68 56.70 16 14 O -0.99 -20.75 16.69 -57.17 -0.95 -21.71 16 15 O -0.98 -23.10 16.01 -57.17 -0.92 -24.01 16 16 N -1.02 -17.68 3.77 -111.07 -0.42 -18.10 16 17 C 0.12 1.74 7.03 -2.81 -0.02 1.72 16 18 C -0.12 -1.42 6.27 -24.90 -0.16 -1.58 16 19 C -0.10 -1.29 3.33 -88.47 -0.29 -1.59 16 20 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 21 C 0.07 0.86 5.38 37.16 0.20 1.06 16 22 O -0.39 -4.80 10.56 -35.23 -0.37 -5.17 16 23 C 0.03 0.29 11.01 101.05 1.11 1.41 16 24 C 0.13 2.12 6.58 -2.52 -0.02 2.10 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 29 H 0.06 0.97 7.61 -51.93 -0.40 0.57 16 30 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 31 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.90 8.01 -51.93 -0.42 0.49 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 1.38 7.78 -51.93 -0.40 0.97 16 43 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -31.27 364.83 -9.17 -40.44 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.45 Total: -0.07 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 0.73 Total: -3.42 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.01 Total: -63.41 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -2.24 Total: -50.89 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 57.38 SS G_CDS: -0.68 Total: 56.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.27 -9.17 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337064489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.248 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds