Wall clock time and date at job start Fri Apr 10 2020 17:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47149 * 2 1 4 4 C 1.46501 * 119.99926 * 274.99660 * 3 2 1 5 5 C 1.50695 * 109.47102 * 275.00043 * 4 3 2 6 6 H 1.08001 * 119.99775 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99901 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47108 * 60.00023 * 9 7 5 11 11 H 1.48499 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47274 * 299.99958 * 9 7 5 13 13 S 1.65598 * 119.99992 * 94.99463 * 3 2 1 14 14 O 1.42100 * 106.40461 * 336.46293 * 13 3 2 15 15 O 1.42100 * 106.40353 * 203.54110 * 13 3 2 16 16 N 1.65601 * 107.21580 * 90.00240 * 13 3 2 17 17 C 1.47486 * 125.59431 * 270.03885 * 16 13 3 18 18 C 1.54323 * 107.03754 * 180.99171 * 17 16 13 19 19 C 1.55153 * 103.10236 * 22.24109 * 18 17 16 20 20 H 1.09003 * 111.00505 * 82.48412 * 19 18 17 21 21 C 1.53000 * 111.00844 * 206.29737 * 19 18 17 22 22 O 1.42902 * 109.46990 * 293.54789 * 21 19 18 23 23 C 1.42900 * 113.99817 * 179.97438 * 22 21 19 24 24 C 1.47428 * 125.64841 * 89.99861 * 16 13 3 25 25 H 1.09004 * 109.47269 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47146 * 300.00102 * 1 2 3 27 27 H 1.09000 * 109.47232 * 60.00304 * 1 2 3 28 28 H 1.08994 * 109.47474 * 239.99468 * 2 1 3 29 29 H 1.09003 * 109.46530 * 119.99539 * 2 1 3 30 30 H 1.09005 * 109.46753 * 35.00451 * 4 3 2 31 31 H 1.08998 * 109.46855 * 154.99691 * 4 3 2 32 32 H 0.97000 * 120.00381 * 179.97438 * 8 7 5 33 33 H 1.09000 * 110.02886 * 61.62521 * 17 16 13 34 34 H 1.09005 * 109.96368 * 300.31378 * 17 16 13 35 35 H 1.09002 * 110.72057 * 263.78860 * 18 17 16 36 36 H 1.09003 * 110.71837 * 140.69433 * 18 17 16 37 37 H 1.09003 * 109.46683 * 53.54519 * 21 19 18 38 38 H 1.08995 * 109.47382 * 173.54127 * 21 19 18 39 39 H 1.08999 * 109.47011 * 60.00459 * 23 22 21 40 40 H 1.09001 * 109.47056 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47168 * 299.99520 * 23 22 21 42 42 H 1.09000 * 110.36462 * 37.09259 * 24 16 13 43 43 H 1.08996 * 110.46287 * 274.81339 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8822 6 1 4.1724 1.1116 -1.3834 7 6 3.8530 2.3613 -3.0843 8 7 3.0281 3.1862 -3.6915 9 14 5.5101 1.9653 -3.8504 10 1 5.6005 0.5055 -4.1073 11 1 5.6518 2.7026 -5.1317 12 1 6.5949 2.3726 -2.9217 13 16 2.4120 2.1202 1.4287 14 8 1.6867 1.4415 2.4448 15 8 2.3056 3.5186 1.1998 16 7 4.0143 1.8137 1.7138 17 6 4.5479 0.6578 2.4582 18 6 6.0835 0.8086 2.4875 19 6 6.2922 2.3278 2.2516 20 1 6.1783 2.8868 3.1805 21 6 7.6558 2.6017 1.6140 22 8 8.6909 2.2644 2.5398 23 6 10.0116 2.4834 2.0401 24 6 5.1422 2.6503 1.2650 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.3617 1.8097 -1.9453 31 1 2.0922 3.1802 -1.0756 32 1 3.2802 3.5893 -4.5369 33 1 4.2760 -0.2692 1.9534 34 1 4.1561 0.6571 3.4754 35 1 6.5434 0.2275 1.6882 36 1 6.4818 0.5106 3.4574 37 1 7.7633 1.9978 0.7129 38 1 7.7302 3.6577 1.3546 39 1 10.1351 3.5370 1.7893 40 1 10.7393 2.2040 2.8019 41 1 10.1678 1.8768 1.1480 42 1 4.8778 3.7061 1.3226 43 1 5.4305 2.3871 0.2473 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337064489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:43 Heat of formation + Delta-G solvation = -147.627211 kcal Electronic energy + Delta-G solvation = -25123.910801 eV Core-core repulsion = 21523.000571 eV Total energy + Delta-G solvation = -3600.910230 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90760 -38.36641 -38.19273 -37.67969 -36.92528 -34.68914 -32.78537 -31.54692 -30.38898 -28.50477 -27.85830 -25.69127 -24.92744 -23.47811 -23.04368 -21.42770 -19.94582 -18.77714 -18.69403 -18.16537 -17.72272 -17.16970 -16.87747 -16.44200 -16.29427 -15.73562 -15.33346 -14.89726 -14.78242 -14.64081 -14.41893 -14.19764 -13.80264 -13.68699 -13.63762 -13.37002 -13.26641 -13.06714 -12.96160 -12.75605 -12.68543 -12.61822 -12.36942 -12.24852 -12.13491 -12.03896 -11.78608 -11.74167 -11.62063 -11.51837 -10.58056 -10.56580 -9.99013 -9.77102 -8.15576 -6.29591 -0.37085 1.43246 1.45066 1.52798 1.95503 2.42811 2.53275 2.76144 3.15911 3.28756 3.57441 3.76619 3.94982 4.04392 4.34334 4.35828 4.39701 4.44137 4.46154 4.48963 4.57741 4.59302 4.67559 4.67705 4.75874 4.88562 4.95385 4.96013 5.02512 5.09194 5.10935 5.17664 5.25626 5.36806 5.38945 5.43835 5.57082 5.76623 5.97764 6.11678 6.22739 6.82128 7.40355 8.92608 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.007002 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.259778 B = 3997.760102 C = 5919.244184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.997 5.997 4 C 0.261 3.739 5 C -0.538 4.538 6 H 0.072 0.928 7 C 0.011 3.989 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.260 1.260 13 S 2.809 3.191 14 O -0.999 6.999 15 O -1.015 7.015 16 N -1.017 6.017 17 C 0.113 3.887 18 C -0.106 4.106 19 C -0.090 4.090 20 H 0.095 0.905 21 C 0.073 3.927 22 O -0.404 6.404 23 C 0.025 3.975 24 C 0.124 3.876 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.020 0.980 31 H 0.014 0.986 32 H 0.265 0.735 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.101 0.899 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 -6.675 10.620 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.138 3.862 5 C -0.578 4.578 6 H 0.090 0.910 7 C -0.188 4.188 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.185 1.185 13 S 2.820 3.180 14 O -0.983 6.983 15 O -0.999 6.999 16 N -0.858 5.858 17 C -0.012 4.012 18 C -0.144 4.144 19 C -0.110 4.110 20 H 0.113 0.887 21 C -0.005 4.005 22 O -0.323 6.323 23 C -0.071 4.071 24 C -0.002 4.002 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.108 -6.125 11.180 15.667 hybrid contribution 0.646 0.240 -1.467 1.621 sum 9.754 -5.885 9.713 14.970 Atomic orbital electron populations 1.22195 0.95847 1.03332 1.01295 1.21256 0.94700 0.81267 1.03182 1.57740 1.78996 1.24132 1.22852 1.18714 0.96704 0.90643 0.80180 1.21767 1.02450 1.27580 1.05955 0.90982 1.25822 1.00845 0.94653 0.97507 1.70067 1.38138 1.31147 1.17607 0.85623 0.79975 0.78551 0.77692 1.19215 1.21565 1.18460 1.00788 0.72357 0.72336 0.72517 1.93514 1.70832 1.76341 1.57588 1.93512 1.86504 1.33428 1.86493 1.58928 1.22681 1.35759 1.68416 1.22047 0.95596 0.87469 0.96083 1.22580 0.92927 0.94759 1.04171 1.22245 0.91659 0.98223 0.98854 0.88697 1.22387 0.86401 0.99880 0.91785 1.87807 1.15321 1.87581 1.41618 1.22923 0.83093 1.00512 1.00580 1.21926 0.85485 0.94464 0.98293 0.88882 0.93502 0.93394 0.90113 0.89720 0.96208 0.96751 0.92619 0.90824 0.90561 0.90165 0.88056 0.92645 0.92471 0.93530 0.88073 0.93567 0.91463 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.22 10.24 71.98 0.74 -4.49 16 2 C 0.12 4.14 6.06 86.38 0.52 4.66 16 3 N -1.00 -41.86 2.82 -519.86 -1.47 -43.33 16 4 C 0.26 13.32 5.43 85.63 0.47 13.78 16 5 C -0.54 -27.75 9.38 25.60 0.24 -27.51 16 6 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 7 C 0.01 0.59 5.46 84.66 0.46 1.05 16 8 N -0.93 -53.65 13.29 21.45 0.28 -53.36 16 9 Si 0.96 40.89 29.54 68.60 2.03 42.92 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 S 2.81 115.87 6.31 -56.49 -0.36 115.51 16 14 O -1.00 -40.92 16.69 -128.00 -2.14 -43.06 16 15 O -1.01 -49.81 16.01 -128.00 -2.05 -51.86 16 16 N -1.02 -34.59 3.77 -505.30 -1.90 -36.50 16 17 C 0.11 2.91 7.03 86.64 0.61 3.52 16 18 C -0.11 -2.29 6.27 31.78 0.20 -2.09 16 19 C -0.09 -2.21 3.33 -9.40 -0.03 -2.24 16 20 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 21 C 0.07 1.65 5.38 71.98 0.39 2.04 16 22 O -0.40 -8.86 10.56 -148.98 -1.57 -10.44 16 23 C 0.02 0.40 11.01 113.37 1.25 1.64 16 24 C 0.12 4.03 6.58 86.86 0.57 4.60 16 25 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 29 H 0.08 2.49 7.61 -2.39 -0.02 2.47 16 30 H 0.02 1.07 8.11 -2.38 -0.02 1.05 16 31 H 0.01 0.83 6.91 -2.39 -0.02 0.82 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.08 1.68 8.01 -2.39 -0.02 1.66 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 2.34 7.78 -2.39 -0.02 2.32 16 43 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 Total: -1.00 -67.62 364.83 -0.80 -68.42 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.96 Total: 16.71 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 5.41 Total: -5.03 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -3.09 Total: -133.19 kcal Atomic # 8 Polarization: -99.59 SS G_CDS: -5.76 Total: -105.35 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: 115.87 SS G_CDS: -0.36 Total: 115.51 kcal Total: -67.62 -0.80 -68.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337064489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.202 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds