Wall clock time and date at job start Fri Apr 10 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47177 * 2 1 4 4 C 1.46501 * 120.00097 * 274.99920 * 3 2 1 5 5 C 1.50699 * 109.47133 * 275.00139 * 4 3 2 6 6 H 1.08000 * 120.00093 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99654 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00122 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46749 * 59.99795 * 9 7 5 11 11 H 1.48495 * 109.47123 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46907 * 300.00347 * 9 7 5 13 13 S 1.65607 * 119.99672 * 95.00136 * 3 2 1 14 14 O 1.42091 * 106.40641 * 336.45909 * 13 3 2 15 15 O 1.42102 * 106.39759 * 203.53923 * 13 3 2 16 16 N 1.65601 * 107.21870 * 90.00363 * 13 3 2 17 17 C 1.47024 * 125.64411 * 269.68564 * 16 13 3 18 18 C 1.54327 * 107.26774 * 179.20663 * 17 16 13 19 19 C 1.55155 * 102.94571 * 337.80617 * 18 17 16 20 20 H 1.08997 * 111.00368 * 277.43464 * 19 18 17 21 21 C 1.52996 * 111.00532 * 153.57522 * 19 18 17 22 22 O 1.42901 * 109.47212 * 72.80511 * 21 19 18 23 23 C 1.42894 * 114.00257 * 179.97438 * 22 21 19 24 24 C 1.47426 * 125.65082 * 89.99577 * 16 13 3 25 25 H 1.08991 * 109.47313 * 59.99979 * 1 2 3 26 26 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46864 * 299.99866 * 1 2 3 28 28 H 1.08994 * 109.47350 * 239.99729 * 2 1 3 29 29 H 1.09004 * 109.47412 * 119.99717 * 2 1 3 30 30 H 1.08998 * 109.46854 * 34.99907 * 4 3 2 31 31 H 1.08996 * 109.47030 * 154.99589 * 4 3 2 32 32 H 0.97004 * 119.99570 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.88316 * 298.62155 * 17 16 13 34 34 H 1.09002 * 109.88101 * 59.79050 * 17 16 13 35 35 H 1.08999 * 110.71564 * 219.44370 * 18 17 16 36 36 H 1.09000 * 110.86856 * 96.24526 * 18 17 16 37 37 H 1.09001 * 109.47183 * 192.80338 * 21 19 18 38 38 H 1.08998 * 109.46965 * 312.80540 * 21 19 18 39 39 H 1.08994 * 109.47385 * 300.00544 * 23 22 21 40 40 H 1.09008 * 109.46884 * 60.00077 * 23 22 21 41 41 H 1.08999 * 109.47251 * 179.97438 * 23 22 21 42 42 H 1.09002 * 110.36518 * 322.69831 * 24 16 13 43 43 H 1.08997 * 110.36787 * 85.02210 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3836 7 6 3.8525 2.3606 -3.0849 8 7 3.0275 3.1855 -3.6919 9 14 5.5095 1.9646 -3.8511 10 1 5.6003 0.5047 -4.1069 11 1 5.6512 2.7020 -5.1323 12 1 6.5944 2.3730 -2.9228 13 16 2.4122 2.1201 1.4288 14 8 1.6869 1.4415 2.4449 15 8 2.3057 3.5186 1.1999 16 7 4.0145 1.8137 1.7138 17 6 4.5474 0.6656 2.4618 18 6 6.0858 0.7867 2.4520 19 6 6.3557 1.6882 1.2184 20 1 6.3550 1.1027 0.2990 21 6 7.6700 2.4552 1.3767 22 8 8.7688 1.5563 1.2131 23 6 10.0503 2.1752 1.3420 24 6 5.1424 2.6502 1.2649 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.3618 1.8097 -1.9453 31 1 2.0921 3.1802 -1.0756 32 1 3.2794 3.5881 -4.5378 33 1 4.1802 0.6890 3.4878 34 1 4.2455 -0.2638 1.9789 35 1 6.5488 -0.1917 2.3233 36 1 6.4436 1.2641 3.3643 37 1 7.7264 3.2392 0.6215 38 1 7.7119 2.9032 2.3695 39 1 10.1558 2.9531 0.5860 40 1 10.1418 2.6178 2.3340 41 1 10.8307 1.4267 1.2051 42 1 4.9423 3.0566 0.2735 43 1 5.3240 3.4557 1.9764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337064491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:45 Heat of formation + Delta-G solvation = -125.395369 kcal Electronic energy + Delta-G solvation = -25250.438566 eV Core-core repulsion = 21650.492381 eV Total energy + Delta-G solvation = -3599.946185 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.81413 -37.20359 -36.65672 -35.99674 -35.19738 -32.71306 -31.63267 -29.93395 -29.23562 -27.00604 -26.59240 -24.66247 -23.11593 -22.15573 -21.54608 -20.32805 -18.42737 -17.17105 -17.06736 -16.60129 -16.27051 -15.91690 -15.54095 -15.32811 -14.64070 -14.44783 -13.96075 -13.50661 -13.37478 -13.30370 -12.95221 -12.81747 -12.66199 -12.12468 -12.00234 -11.93971 -11.67226 -11.52915 -11.50158 -11.33652 -11.16076 -11.04614 -10.96651 -10.88474 -10.71040 -10.53185 -10.45048 -10.38063 -10.06258 -9.76949 -9.67167 -8.64532 -8.48631 -8.04010 -6.11169 -4.17716 1.24540 3.25734 3.31463 3.32920 3.47503 3.73942 4.14197 4.36090 4.63046 4.72630 4.98509 5.08943 5.20440 5.22454 5.24935 5.36471 5.43495 5.48583 5.50459 5.55963 5.66018 5.77865 5.80576 5.82740 5.85184 5.97695 6.08141 6.11505 6.23975 6.33757 6.45240 6.53084 6.64657 6.67672 6.80996 7.12906 7.36414 7.45878 7.66889 7.86361 8.16074 8.87566 9.48207 10.96708 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.007404 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.952099 B = 3780.992395 C = 5679.619169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.274 1.274 13 S 2.798 3.202 14 O -0.995 6.995 15 O -0.975 6.975 16 N -1.015 6.015 17 C 0.123 3.877 18 C -0.117 4.117 19 C -0.098 4.098 20 H 0.098 0.902 21 C 0.072 3.928 22 O -0.389 6.389 23 C 0.032 3.968 24 C 0.133 3.867 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -4.371 10.313 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.199 1.199 13 S 2.808 3.192 14 O -0.979 6.979 15 O -0.959 6.959 16 N -0.853 5.853 17 C -0.003 4.003 18 C -0.156 4.156 19 C -0.118 4.118 20 H 0.116 0.884 21 C -0.005 4.005 22 O -0.308 6.308 23 C -0.065 4.065 24 C 0.007 3.993 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.926 -3.908 10.643 13.286 hybrid contribution 1.305 -0.140 -0.868 1.573 sum 8.231 -4.048 9.775 13.405 Atomic orbital electron populations 1.22204 0.96923 1.01384 1.02376 1.20971 0.93644 0.82952 1.02031 1.57807 1.78159 1.22950 1.24297 1.19192 0.97338 0.92179 0.79017 1.21525 1.02219 1.28024 1.06014 0.91901 1.24946 0.97151 0.94847 0.96864 1.69929 1.35990 1.29771 1.17091 0.86677 0.84257 0.78541 0.78686 1.20210 1.21290 1.19911 1.01383 0.71684 0.73328 0.72785 1.93528 1.70049 1.76559 1.57808 1.93573 1.85549 1.30787 1.86024 1.59104 1.23654 1.34666 1.67889 1.21624 0.94235 0.88664 0.95758 1.22626 0.94311 1.00765 0.97861 1.22347 0.92015 0.97305 1.00168 0.88351 1.22470 0.85862 0.92193 1.00011 1.87877 1.13888 1.35785 1.93258 1.22712 0.85405 0.98613 0.99727 1.21829 0.84252 0.92101 1.01142 0.92062 0.92341 0.92679 0.90247 0.92053 0.94394 0.93241 0.92563 0.91706 0.91993 0.90180 0.91054 0.92667 0.93084 0.94093 0.94281 0.89848 0.88615 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.24 37.16 0.38 -2.35 16 2 C 0.13 2.31 6.06 -4.04 -0.02 2.28 16 3 N -0.99 -20.66 2.83 -115.66 -0.33 -20.99 16 4 C 0.24 6.04 5.43 -5.19 -0.03 6.02 16 5 C -0.54 -13.83 9.34 -34.44 -0.32 -14.15 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 S 2.80 57.29 6.31 -107.50 -0.68 56.62 16 14 O -1.00 -20.72 16.69 -57.17 -0.95 -21.67 16 15 O -0.98 -23.05 16.28 -57.17 -0.93 -23.98 16 16 N -1.01 -17.65 3.76 -111.42 -0.42 -18.07 16 17 C 0.12 1.74 6.99 -3.06 -0.02 1.72 16 18 C -0.12 -1.44 6.39 -24.90 -0.16 -1.59 16 19 C -0.10 -1.41 3.30 -88.47 -0.29 -1.70 16 20 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 21 C 0.07 0.91 5.39 37.16 0.20 1.11 16 22 O -0.39 -5.15 10.67 -35.23 -0.38 -5.53 16 23 C 0.03 0.31 11.01 101.05 1.11 1.42 16 24 C 0.13 2.18 6.45 -2.53 -0.02 2.16 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.40 8.11 -51.93 -0.42 0.97 16 29 H 0.06 0.97 7.61 -51.93 -0.40 0.58 16 30 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 31 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.55 7.97 -51.93 -0.41 0.14 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.82 8.10 -51.93 -0.42 1.40 16 43 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -31.50 365.15 -9.19 -40.68 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.45 Total: -0.14 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 0.73 Total: -3.45 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.01 Total: -63.50 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -2.26 Total: -51.18 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 57.29 SS G_CDS: -0.68 Total: 56.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.50 -9.19 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337064491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.710 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds