Wall clock time and date at job start Fri Apr 10 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47177 * 2 1 4 4 C 1.46501 * 120.00097 * 274.99920 * 3 2 1 5 5 C 1.50699 * 109.47133 * 275.00139 * 4 3 2 6 6 H 1.08000 * 120.00093 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99654 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00122 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46749 * 59.99795 * 9 7 5 11 11 H 1.48495 * 109.47123 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46907 * 300.00347 * 9 7 5 13 13 S 1.65607 * 119.99672 * 95.00136 * 3 2 1 14 14 O 1.42091 * 106.40641 * 336.45909 * 13 3 2 15 15 O 1.42102 * 106.39759 * 203.53923 * 13 3 2 16 16 N 1.65601 * 107.21870 * 90.00363 * 13 3 2 17 17 C 1.47024 * 125.64411 * 269.68564 * 16 13 3 18 18 C 1.54327 * 107.26774 * 179.20663 * 17 16 13 19 19 C 1.55155 * 102.94571 * 337.80617 * 18 17 16 20 20 H 1.08997 * 111.00368 * 277.43464 * 19 18 17 21 21 C 1.52996 * 111.00532 * 153.57522 * 19 18 17 22 22 O 1.42901 * 109.47212 * 72.80511 * 21 19 18 23 23 C 1.42894 * 114.00257 * 179.97438 * 22 21 19 24 24 C 1.47426 * 125.65082 * 89.99577 * 16 13 3 25 25 H 1.08991 * 109.47313 * 59.99979 * 1 2 3 26 26 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46864 * 299.99866 * 1 2 3 28 28 H 1.08994 * 109.47350 * 239.99729 * 2 1 3 29 29 H 1.09004 * 109.47412 * 119.99717 * 2 1 3 30 30 H 1.08998 * 109.46854 * 34.99907 * 4 3 2 31 31 H 1.08996 * 109.47030 * 154.99589 * 4 3 2 32 32 H 0.97004 * 119.99570 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.88316 * 298.62155 * 17 16 13 34 34 H 1.09002 * 109.88101 * 59.79050 * 17 16 13 35 35 H 1.08999 * 110.71564 * 219.44370 * 18 17 16 36 36 H 1.09000 * 110.86856 * 96.24526 * 18 17 16 37 37 H 1.09001 * 109.47183 * 192.80338 * 21 19 18 38 38 H 1.08998 * 109.46965 * 312.80540 * 21 19 18 39 39 H 1.08994 * 109.47385 * 300.00544 * 23 22 21 40 40 H 1.09008 * 109.46884 * 60.00077 * 23 22 21 41 41 H 1.08999 * 109.47251 * 179.97438 * 23 22 21 42 42 H 1.09002 * 110.36518 * 322.69831 * 24 16 13 43 43 H 1.08997 * 110.36787 * 85.02210 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3836 7 6 3.8525 2.3606 -3.0849 8 7 3.0275 3.1855 -3.6919 9 14 5.5095 1.9646 -3.8511 10 1 5.6003 0.5047 -4.1069 11 1 5.6512 2.7020 -5.1323 12 1 6.5944 2.3730 -2.9228 13 16 2.4122 2.1201 1.4288 14 8 1.6869 1.4415 2.4449 15 8 2.3057 3.5186 1.1999 16 7 4.0145 1.8137 1.7138 17 6 4.5474 0.6656 2.4618 18 6 6.0858 0.7867 2.4520 19 6 6.3557 1.6882 1.2184 20 1 6.3550 1.1027 0.2990 21 6 7.6700 2.4552 1.3767 22 8 8.7688 1.5563 1.2131 23 6 10.0503 2.1752 1.3420 24 6 5.1424 2.6502 1.2649 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.3618 1.8097 -1.9453 31 1 2.0921 3.1802 -1.0756 32 1 3.2794 3.5881 -4.5378 33 1 4.1802 0.6890 3.4878 34 1 4.2455 -0.2638 1.9789 35 1 6.5488 -0.1917 2.3233 36 1 6.4436 1.2641 3.3643 37 1 7.7264 3.2392 0.6215 38 1 7.7119 2.9032 2.3695 39 1 10.1558 2.9531 0.5860 40 1 10.1418 2.6178 2.3340 41 1 10.8307 1.4267 1.2051 42 1 4.9423 3.0566 0.2735 43 1 5.3240 3.4557 1.9764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337064491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:45 Heat of formation + Delta-G solvation = -147.724545 kcal Electronic energy + Delta-G solvation = -25251.406832 eV Core-core repulsion = 21650.492381 eV Total energy + Delta-G solvation = -3600.914451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.91982 -38.36434 -38.21364 -37.68073 -36.92386 -34.69508 -32.80359 -31.55110 -30.37005 -28.50519 -27.85750 -25.68791 -24.93188 -23.49175 -23.01889 -21.43563 -19.95421 -18.76461 -18.70141 -18.20563 -17.72995 -17.15261 -16.82779 -16.41122 -16.34428 -15.73442 -15.36708 -14.85858 -14.78893 -14.62320 -14.44252 -14.16470 -13.84348 -13.71465 -13.62171 -13.37354 -13.24569 -13.06866 -13.02400 -12.76155 -12.69090 -12.57242 -12.34708 -12.25880 -12.14240 -12.02266 -11.78948 -11.71350 -11.61988 -11.53755 -10.57498 -10.56349 -10.01175 -9.75378 -8.16637 -6.29916 -0.36700 1.42995 1.43662 1.51292 1.95040 2.41868 2.54948 2.78547 3.14962 3.28338 3.57746 3.78582 3.95101 4.04070 4.33923 4.37445 4.40959 4.43635 4.45349 4.50879 4.57983 4.59731 4.64787 4.69461 4.75347 4.88385 4.94661 4.96145 4.99939 5.10611 5.13380 5.18648 5.25974 5.37226 5.39915 5.44622 5.57565 5.76563 5.97586 6.11138 6.25983 6.82069 7.40010 8.91428 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.007404 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.952099 B = 3780.992395 C = 5679.619169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.997 5.997 4 C 0.261 3.739 5 C -0.536 4.536 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.929 5.929 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.264 1.264 13 S 2.809 3.191 14 O -0.998 6.998 15 O -1.014 7.014 16 N -1.016 6.016 17 C 0.112 3.888 18 C -0.103 4.103 19 C -0.095 4.095 20 H 0.075 0.925 21 C 0.074 3.926 22 O -0.410 6.410 23 C 0.025 3.975 24 C 0.127 3.873 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.021 0.979 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.709 -6.008 11.741 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.138 3.862 5 C -0.576 4.576 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.568 5.568 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.189 1.189 13 S 2.820 3.180 14 O -0.982 6.982 15 O -0.998 6.998 16 N -0.857 5.857 17 C -0.012 4.012 18 C -0.142 4.142 19 C -0.116 4.116 20 H 0.094 0.906 21 C -0.003 4.003 22 O -0.330 6.330 23 C -0.071 4.071 24 C 0.002 3.998 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.951 -5.573 12.092 16.044 hybrid contribution 0.675 0.348 -1.249 1.462 sum 9.626 -5.225 10.843 15.412 Atomic orbital electron populations 1.22190 0.95776 1.03330 1.01327 1.21251 0.94735 0.81284 1.03126 1.57742 1.78994 1.24117 1.22885 1.18714 0.96618 0.90675 0.80221 1.21756 1.02440 1.27497 1.05865 0.91159 1.25757 1.00570 0.94707 0.97514 1.70063 1.38008 1.31156 1.17601 0.85681 0.80204 0.78582 0.77735 1.19304 1.21372 1.18869 1.00820 0.72337 0.72374 0.72490 1.93513 1.70804 1.76333 1.57576 1.93518 1.86493 1.33349 1.86466 1.58855 1.22736 1.36031 1.68075 1.21960 0.95651 0.87554 0.96071 1.22613 0.92724 1.01264 0.97605 1.22239 0.92025 0.96989 1.00312 0.90624 1.22417 0.85078 0.91629 1.01143 1.87831 1.15015 1.36593 1.93542 1.22921 0.84162 0.99171 1.00813 1.21906 0.84919 0.93177 0.99813 0.93376 0.88905 0.93439 0.90234 0.89759 0.96143 0.96653 0.92605 0.90271 0.91305 0.88685 0.88867 0.93365 0.90718 0.93994 0.92564 0.88469 0.92100 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 10.24 71.98 0.74 -4.50 16 2 C 0.12 4.19 6.06 86.38 0.52 4.71 16 3 N -1.00 -42.11 2.83 -519.85 -1.47 -43.58 16 4 C 0.26 13.40 5.43 85.63 0.47 13.86 16 5 C -0.54 -28.03 9.34 25.60 0.24 -27.79 16 6 H 0.07 3.50 7.81 -2.91 -0.02 3.47 16 7 C 0.01 0.76 5.46 84.65 0.46 1.22 16 8 N -0.93 -53.98 13.29 21.45 0.28 -53.70 16 9 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 S 2.81 115.55 6.31 -56.49 -0.36 115.20 16 14 O -1.00 -40.66 16.69 -128.00 -2.14 -42.79 16 15 O -1.01 -49.51 16.28 -128.00 -2.08 -51.59 16 16 N -1.02 -34.44 3.76 -506.41 -1.90 -36.35 16 17 C 0.11 2.89 6.99 86.73 0.61 3.49 16 18 C -0.10 -2.21 6.39 31.78 0.20 -2.00 16 19 C -0.10 -2.57 3.30 -9.40 -0.03 -2.60 16 20 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 21 C 0.07 1.71 5.39 71.98 0.39 2.10 16 22 O -0.41 -9.82 10.67 -148.98 -1.59 -11.41 16 23 C 0.03 0.42 11.01 113.37 1.25 1.67 16 24 C 0.13 4.13 6.45 86.86 0.56 4.69 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 29 H 0.08 2.51 7.61 -2.38 -0.02 2.49 16 30 H 0.02 1.10 8.11 -2.39 -0.02 1.09 16 31 H 0.02 0.89 6.91 -2.39 -0.02 0.88 16 32 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 1.62 7.91 -2.39 -0.02 1.60 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.36 7.97 -2.39 -0.02 1.34 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 2.39 8.10 -2.39 -0.02 2.37 16 43 H 0.08 2.25 8.04 -2.39 -0.02 2.23 16 Total: -1.00 -68.73 365.15 -0.86 -69.59 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.96 Total: 15.59 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.40 Total: -5.15 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -3.09 Total: -133.62 kcal Atomic # 8 Polarization: -99.99 SS G_CDS: -5.81 Total: -105.79 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 115.55 SS G_CDS: -0.36 Total: 115.20 kcal Total: -68.73 -0.86 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337064491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.132 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds