Wall clock time and date at job start Fri Apr 10 2020 17:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46498 * 109.46819 * 2 1 4 4 C 1.46498 * 119.99874 * 275.00170 * 3 2 1 5 5 C 1.50709 * 109.47113 * 274.99977 * 4 3 2 6 6 H 1.08002 * 119.99589 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00118 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99772 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99977 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46735 * 90.00676 * 9 7 5 11 11 H 1.48500 * 109.47074 * 210.00065 * 9 7 5 12 12 H 1.48492 * 109.47211 * 330.00479 * 9 7 5 13 13 S 1.65595 * 120.00275 * 94.99881 * 3 2 1 14 14 O 1.42105 * 106.40149 * 23.54018 * 13 3 2 15 15 O 1.42098 * 106.40317 * 156.45891 * 13 3 2 16 16 N 1.65606 * 107.22013 * 270.00200 * 13 3 2 17 17 C 1.46923 * 120.62553 * 269.71749 * 16 13 3 18 18 C 1.52760 * 109.00861 * 233.58205 * 17 16 13 19 19 C 1.53046 * 109.38256 * 305.58983 * 18 17 16 20 20 C 1.52996 * 109.44823 * 181.25114 * 19 18 17 21 21 O 1.42899 * 109.47361 * 64.93978 * 20 19 18 22 22 C 1.53042 * 109.53591 * 61.23964 * 19 18 17 23 23 C 1.46921 * 120.63289 * 89.99671 * 16 13 3 24 24 H 1.09000 * 109.46418 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46892 * 299.99940 * 1 2 3 26 26 H 1.08992 * 109.47062 * 60.00677 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99998 * 2 1 3 28 28 H 1.09002 * 109.46995 * 119.99496 * 2 1 3 29 29 H 1.08996 * 109.47764 * 34.99918 * 4 3 2 30 30 H 1.09003 * 109.47361 * 155.00291 * 4 3 2 31 31 H 0.97006 * 119.99874 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.59343 * 353.42265 * 17 16 13 33 33 H 1.09010 * 109.58634 * 113.84364 * 17 16 13 34 34 H 1.09006 * 109.56563 * 185.55777 * 18 17 16 35 35 H 1.09001 * 109.35973 * 65.50306 * 18 17 16 36 36 H 1.08998 * 109.46354 * 301.21868 * 19 18 17 37 37 H 1.08999 * 109.47426 * 184.93860 * 20 19 18 38 38 H 1.09004 * 109.47658 * 304.93964 * 20 19 18 39 39 H 0.96702 * 114.00632 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.49686 * 178.67995 * 22 19 18 41 41 H 1.09001 * 109.49965 * 58.58641 * 22 19 18 42 42 H 1.08997 * 109.58689 * 246.15965 * 23 16 13 43 43 H 1.08998 * 109.58450 * 6.44081 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8824 6 1 4.1724 1.1118 -1.3836 7 6 3.8529 2.3614 -3.0844 8 7 5.0190 2.0819 -3.6243 9 14 2.6811 3.5330 -3.9468 10 1 2.9449 4.9215 -3.4908 11 1 2.8863 3.4468 -5.4150 12 1 1.2808 3.1623 -3.6200 13 16 2.4122 2.1203 1.4286 14 8 2.7096 1.0800 2.3499 15 8 3.3283 3.1571 1.1048 16 7 1.0430 2.8642 1.9894 17 6 0.7403 4.2531 1.6181 18 6 0.5043 5.0677 2.8886 19 6 -0.5795 4.3916 3.7315 20 6 -0.8392 5.2228 4.9894 21 8 -1.3831 6.4911 4.6184 22 6 -0.1149 2.9899 4.1336 23 6 0.1112 2.1499 2.8726 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3618 1.8097 -1.9453 30 1 2.0921 3.1803 -1.0756 31 1 5.2709 2.4844 -4.4702 32 1 1.5799 4.6751 1.0658 33 1 -0.1566 4.2787 0.9991 34 1 0.1826 6.0746 2.6222 35 1 1.4304 5.1207 3.4611 36 1 -1.4981 4.3167 3.1497 37 1 -1.5462 4.6983 5.6321 38 1 0.0978 5.3723 5.5261 39 1 -1.5733 7.0720 5.3678 40 1 -0.8772 2.5178 4.7534 41 1 0.8169 3.0623 4.6944 42 1 -0.8380 2.0004 2.3581 43 1 0.5348 1.1836 3.1458 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337094121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:47 Heat of formation + Delta-G solvation = -132.075838 kcal Electronic energy + Delta-G solvation = -25217.910580 eV Core-core repulsion = 21617.674708 eV Total energy + Delta-G solvation = -3600.235872 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.00560 -36.77558 -36.68744 -36.15325 -35.20446 -32.87444 -32.57232 -31.14475 -30.24388 -27.16227 -26.86369 -23.42011 -22.90825 -22.57723 -21.50911 -20.33336 -18.41791 -17.60307 -17.39120 -16.87997 -16.66715 -15.83439 -15.33036 -14.99697 -14.65131 -14.44814 -14.19246 -13.88106 -13.58195 -13.45929 -13.23064 -12.82236 -12.68353 -12.50437 -12.38196 -11.99062 -11.95808 -11.57425 -11.49321 -11.44120 -11.21809 -11.10242 -10.97745 -10.95042 -10.63510 -10.51479 -10.45037 -10.37058 -10.17161 -10.14478 -9.54107 -8.90820 -8.58078 -8.10776 -6.07052 -4.06174 1.11566 3.27514 3.32914 3.34030 3.40979 3.93133 4.00902 4.39237 4.55754 4.61614 4.76507 4.91896 5.10911 5.11717 5.19131 5.22543 5.30212 5.31465 5.38909 5.42196 5.60629 5.65548 5.67492 5.68594 5.79068 5.84786 5.92065 5.95373 6.03579 6.19761 6.28431 6.30816 6.48096 6.52318 6.70115 6.80252 7.12319 7.35320 7.43949 7.59760 8.50432 8.97858 9.52129 11.06586 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.004935 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.516810 B = 5672.614131 C = 6330.453963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.986 5.986 4 C 0.229 3.771 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.779 3.221 14 O -0.992 6.992 15 O -0.960 6.960 16 N -1.012 6.012 17 C 0.118 3.882 18 C -0.122 4.122 19 C -0.085 4.085 20 C 0.080 3.920 21 O -0.572 6.572 22 C -0.125 4.125 23 C 0.122 3.878 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.377 0.623 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.782 3.065 15.638 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 N -0.826 5.826 4 C 0.106 3.894 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.788 3.212 14 O -0.976 6.976 15 O -0.944 6.944 16 N -0.850 5.850 17 C -0.008 4.008 18 C -0.161 4.161 19 C -0.104 4.104 20 C 0.002 3.998 21 O -0.377 6.377 22 C -0.164 4.164 23 C -0.004 4.004 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.223 0.777 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.725 2.836 15.267 21.400 hybrid contribution -0.933 0.869 -0.202 1.291 sum -15.658 3.705 15.065 22.042 Atomic orbital electron populations 1.22287 0.97263 1.01552 1.01993 1.21175 0.92945 0.82984 1.03916 1.57561 1.81094 1.21494 1.22459 1.19390 0.98159 0.90849 0.81046 1.21383 1.00850 1.28885 1.05884 0.90470 1.24862 0.95055 0.96075 0.96931 1.69897 1.20573 1.44005 1.18890 0.86934 0.81845 0.82245 0.79191 1.19777 1.20977 1.18953 1.02072 0.73207 0.73133 0.72766 1.93510 1.83173 1.57772 1.63174 1.93620 1.59091 1.57618 1.84053 1.58459 1.42871 1.21960 1.61756 1.21333 1.02333 0.80359 0.96733 1.21788 0.98541 0.99273 0.96504 1.21097 0.99563 0.93928 0.95807 1.22253 0.96801 0.84223 0.96490 1.86491 1.85945 1.27962 1.37348 1.21855 1.01924 0.94821 0.97835 1.21329 0.93775 0.95369 0.89912 0.92058 0.93228 0.92164 0.89480 0.90370 0.94938 0.95542 0.92543 0.88649 0.91658 0.90118 0.91643 0.90267 0.93786 0.93630 0.77663 0.90813 0.91185 0.91624 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.12 1.97 6.40 -4.04 -0.03 1.95 16 3 N -0.99 -19.98 2.82 -115.65 -0.33 -20.31 16 4 C 0.23 5.38 4.17 -5.19 -0.02 5.35 16 5 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 9 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 13 S 2.78 55.04 6.10 -107.50 -0.66 54.38 16 14 O -0.99 -20.46 15.28 -57.17 -0.87 -21.34 16 15 O -0.96 -22.87 15.69 -57.17 -0.90 -23.76 16 16 N -1.01 -15.06 3.35 -113.77 -0.38 -15.44 16 17 C 0.12 1.63 6.45 -3.93 -0.03 1.60 16 18 C -0.12 -1.44 5.25 -26.83 -0.14 -1.58 16 19 C -0.09 -0.85 2.39 -90.58 -0.22 -1.06 16 20 C 0.08 0.66 6.43 37.16 0.24 0.90 16 21 O -0.57 -5.08 13.17 -35.23 -0.46 -5.55 16 22 C -0.13 -1.21 5.36 -26.61 -0.14 -1.35 16 23 C 0.12 1.42 5.53 -3.71 -0.02 1.40 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.59 6.44 -51.93 -0.33 0.26 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 28 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 29 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 30 H 0.03 0.62 7.04 -51.93 -0.37 0.26 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.10 1.49 6.91 -51.93 -0.36 1.13 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.08 0.92 7.79 -51.93 -0.40 0.52 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 1.64 9.12 45.56 0.42 2.05 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.65 7.50 -51.93 -0.39 0.26 16 43 H 0.09 1.10 6.92 -51.93 -0.36 0.74 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -35.55 349.76 -8.98 -44.53 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.34 Total: 0.82 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.41 Total: -8.17 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.07 Total: -62.63 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -2.23 Total: -50.65 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.66 Total: 54.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.55 -8.98 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337094121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.544 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds