Wall clock time and date at job start Fri Apr 10 2020 17:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46498 * 109.46819 * 2 1 4 4 C 1.46498 * 119.99874 * 275.00170 * 3 2 1 5 5 C 1.50709 * 109.47113 * 274.99977 * 4 3 2 6 6 H 1.08002 * 119.99589 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00118 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99772 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99977 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46735 * 90.00676 * 9 7 5 11 11 H 1.48500 * 109.47074 * 210.00065 * 9 7 5 12 12 H 1.48492 * 109.47211 * 330.00479 * 9 7 5 13 13 S 1.65595 * 120.00275 * 94.99881 * 3 2 1 14 14 O 1.42105 * 106.40149 * 23.54018 * 13 3 2 15 15 O 1.42098 * 106.40317 * 156.45891 * 13 3 2 16 16 N 1.65606 * 107.22013 * 270.00200 * 13 3 2 17 17 C 1.46923 * 120.62553 * 269.71749 * 16 13 3 18 18 C 1.52760 * 109.00861 * 233.58205 * 17 16 13 19 19 C 1.53046 * 109.38256 * 305.58983 * 18 17 16 20 20 C 1.52996 * 109.44823 * 181.25114 * 19 18 17 21 21 O 1.42899 * 109.47361 * 64.93978 * 20 19 18 22 22 C 1.53042 * 109.53591 * 61.23964 * 19 18 17 23 23 C 1.46921 * 120.63289 * 89.99671 * 16 13 3 24 24 H 1.09000 * 109.46418 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46892 * 299.99940 * 1 2 3 26 26 H 1.08992 * 109.47062 * 60.00677 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99998 * 2 1 3 28 28 H 1.09002 * 109.46995 * 119.99496 * 2 1 3 29 29 H 1.08996 * 109.47764 * 34.99918 * 4 3 2 30 30 H 1.09003 * 109.47361 * 155.00291 * 4 3 2 31 31 H 0.97006 * 119.99874 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.59343 * 353.42265 * 17 16 13 33 33 H 1.09010 * 109.58634 * 113.84364 * 17 16 13 34 34 H 1.09006 * 109.56563 * 185.55777 * 18 17 16 35 35 H 1.09001 * 109.35973 * 65.50306 * 18 17 16 36 36 H 1.08998 * 109.46354 * 301.21868 * 19 18 17 37 37 H 1.08999 * 109.47426 * 184.93860 * 20 19 18 38 38 H 1.09004 * 109.47658 * 304.93964 * 20 19 18 39 39 H 0.96702 * 114.00632 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.49686 * 178.67995 * 22 19 18 41 41 H 1.09001 * 109.49965 * 58.58641 * 22 19 18 42 42 H 1.08997 * 109.58689 * 246.15965 * 23 16 13 43 43 H 1.08998 * 109.58450 * 6.44081 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8824 6 1 4.1724 1.1118 -1.3836 7 6 3.8529 2.3614 -3.0844 8 7 5.0190 2.0819 -3.6243 9 14 2.6811 3.5330 -3.9468 10 1 2.9449 4.9215 -3.4908 11 1 2.8863 3.4468 -5.4150 12 1 1.2808 3.1623 -3.6200 13 16 2.4122 2.1203 1.4286 14 8 2.7096 1.0800 2.3499 15 8 3.3283 3.1571 1.1048 16 7 1.0430 2.8642 1.9894 17 6 0.7403 4.2531 1.6181 18 6 0.5043 5.0677 2.8886 19 6 -0.5795 4.3916 3.7315 20 6 -0.8392 5.2228 4.9894 21 8 -1.3831 6.4911 4.6184 22 6 -0.1149 2.9899 4.1336 23 6 0.1112 2.1499 2.8726 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3618 1.8097 -1.9453 30 1 2.0921 3.1803 -1.0756 31 1 5.2709 2.4844 -4.4702 32 1 1.5799 4.6751 1.0658 33 1 -0.1566 4.2787 0.9991 34 1 0.1826 6.0746 2.6222 35 1 1.4304 5.1207 3.4611 36 1 -1.4981 4.3167 3.1497 37 1 -1.5462 4.6983 5.6321 38 1 0.0978 5.3723 5.5261 39 1 -1.5733 7.0720 5.3678 40 1 -0.8772 2.5178 4.7534 41 1 0.8169 3.0623 4.6944 42 1 -0.8380 2.0004 2.3581 43 1 0.5348 1.1836 3.1458 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337094121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:47 Heat of formation + Delta-G solvation = -161.291868 kcal Electronic energy + Delta-G solvation = -25219.177482 eV Core-core repulsion = 21617.674708 eV Total energy + Delta-G solvation = -3601.502774 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88012 -38.42517 -37.75742 -37.40919 -36.89056 -34.69314 -33.78396 -32.12865 -31.75971 -28.95496 -27.72123 -24.62510 -24.34314 -23.49757 -23.09546 -21.25026 -19.73880 -19.21466 -18.69562 -18.35002 -18.09359 -17.34271 -16.45562 -16.06082 -15.95419 -15.51465 -15.42505 -15.29834 -14.75761 -14.61899 -14.51169 -14.22935 -14.11940 -13.71040 -13.64913 -13.53698 -13.36167 -13.12743 -12.96405 -12.76525 -12.72130 -12.58120 -12.19537 -12.14077 -12.06794 -11.78044 -11.71735 -11.63050 -11.46987 -11.36739 -10.79173 -10.77626 -10.03139 -9.76911 -8.29813 -6.35686 -0.41776 1.35649 1.39897 1.48228 1.99413 2.34670 2.51796 3.04082 3.31355 3.34829 3.68911 3.79433 3.93763 4.12983 4.19257 4.24008 4.38889 4.43568 4.44422 4.55170 4.57193 4.64632 4.68956 4.79890 4.82849 4.85757 4.90010 4.99212 5.01035 5.03243 5.08955 5.18095 5.30121 5.40768 5.44684 5.47280 5.49026 5.63491 5.87888 6.30464 6.66911 6.97043 7.27329 8.87975 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.004935 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.516810 B = 5672.614131 C = 6330.453963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.107 3.893 3 N -0.994 5.994 4 C 0.239 3.761 5 C -0.544 4.544 6 H 0.025 0.975 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.228 1.228 13 S 2.787 3.213 14 O -1.008 7.008 15 O -1.011 7.011 16 N -1.000 6.000 17 C 0.113 3.887 18 C -0.119 4.119 19 C -0.083 4.083 20 C 0.081 3.919 21 O -0.592 6.592 22 C -0.122 4.122 23 C 0.111 3.889 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.268 0.732 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.395 0.605 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.985 3.803 16.625 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.834 5.834 4 C 0.114 3.886 5 C -0.583 4.583 6 H 0.043 0.957 7 C -0.191 4.191 8 N -0.589 5.589 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.150 1.150 13 S 2.797 3.203 14 O -0.991 6.991 15 O -0.994 6.994 16 N -0.842 5.842 17 C -0.012 4.012 18 C -0.158 4.158 19 C -0.102 4.102 20 C 0.004 3.996 21 O -0.401 6.401 22 C -0.161 4.161 23 C -0.013 4.013 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.245 0.755 40 H 0.125 0.875 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.944 3.544 16.293 25.237 hybrid contribution 0.439 0.582 -0.391 0.827 sum -18.506 4.126 15.902 24.746 Atomic orbital electron populations 1.22205 0.93559 1.03578 1.02703 1.21405 0.96001 0.81221 1.03232 1.57525 1.81663 1.22793 1.21406 1.19130 0.95608 0.91410 0.82433 1.21716 1.02563 1.27886 1.06133 0.95673 1.25942 0.97100 0.98168 0.97840 1.70076 1.23216 1.45913 1.19717 0.85790 0.80917 0.79113 0.77697 1.19380 1.20368 1.15039 1.01515 0.73780 0.72413 0.72574 1.93476 1.83979 1.58331 1.63356 1.93549 1.61967 1.59144 1.84772 1.58046 1.42128 1.22298 1.61771 1.21494 1.02147 0.79584 0.98013 1.21759 0.98929 0.99351 0.95744 1.21091 0.98717 0.94046 0.96345 1.22222 0.97484 0.84174 0.95730 1.86433 1.85997 1.28547 1.39090 1.21861 1.02545 0.94663 0.96995 1.21714 0.93859 0.95239 0.90495 0.89394 0.91538 0.92340 0.91205 0.90178 0.92753 0.95111 0.92343 0.91223 0.89386 0.89745 0.92949 0.89666 0.91606 0.93655 0.75516 0.87488 0.92254 0.88787 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 10.24 71.99 0.74 -3.06 16 2 C 0.11 3.57 6.40 86.38 0.55 4.12 16 3 N -0.99 -40.36 2.82 -519.82 -1.47 -41.83 16 4 C 0.24 11.16 4.17 85.64 0.36 11.52 16 5 C -0.54 -32.27 9.94 25.60 0.25 -32.01 16 6 H 0.02 1.69 8.06 -2.91 -0.02 1.67 16 7 C 0.01 0.42 5.47 84.65 0.46 0.89 16 8 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 9 Si 0.94 43.21 27.47 68.60 1.88 45.09 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.23 -9.02 6.54 99.48 0.65 -8.36 16 13 S 2.79 111.73 6.10 -56.49 -0.34 111.39 16 14 O -1.01 -42.05 15.28 -128.00 -1.96 -44.01 16 15 O -1.01 -50.13 15.69 -128.00 -2.01 -52.14 16 16 N -1.00 -28.32 3.35 -513.86 -1.72 -30.04 16 17 C 0.11 2.94 6.45 86.22 0.56 3.50 16 18 C -0.12 -2.60 5.25 30.53 0.16 -2.44 16 19 C -0.08 -1.38 2.39 -10.77 -0.03 -1.41 16 20 C 0.08 1.08 6.43 71.98 0.46 1.55 16 21 O -0.59 -8.79 13.17 -148.98 -1.96 -10.75 16 22 C -0.12 -1.94 5.36 30.67 0.16 -1.77 16 23 C 0.11 2.24 5.53 86.36 0.48 2.72 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.33 6.44 -2.39 -0.02 1.31 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 28 H 0.08 2.61 6.91 -2.39 -0.02 2.59 16 29 H 0.05 2.31 7.17 -2.39 -0.02 2.29 16 30 H 0.03 1.42 7.04 -2.39 -0.02 1.41 16 31 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 32 H 0.07 2.19 6.91 -2.39 -0.02 2.17 16 33 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.08 1.79 7.79 -2.38 -0.02 1.77 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.40 2.34 9.12 -74.06 -0.68 1.66 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.42 7.50 -2.39 -0.02 1.40 16 43 H 0.09 1.88 6.92 -2.39 -0.02 1.87 16 Total: -1.00 -81.41 349.76 -2.85 -84.27 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.27 Total: 15.07 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.16 Total: -16.39 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -2.89 Total: -132.52 kcal Atomic # 8 Polarization: -100.97 SS G_CDS: -5.93 Total: -106.90 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Atomic # 16 Polarization: 111.73 SS G_CDS: -0.34 Total: 111.39 kcal Total: -81.41 -2.85 -84.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337094121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.024 kcal (2) G-P(sol) polarization free energy of solvation -81.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds