Wall clock time and date at job start Fri Apr 10 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46611 * 2 1 4 4 C 1.46501 * 120.00115 * 274.99879 * 3 2 1 5 5 C 1.50701 * 109.46944 * 275.00768 * 4 3 2 6 6 H 1.08002 * 120.00468 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00006 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99938 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99975 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46977 * 90.00175 * 9 7 5 11 11 H 1.48491 * 109.47227 * 210.00517 * 9 7 5 12 12 H 1.48500 * 109.46977 * 330.00375 * 9 7 5 13 13 S 1.65600 * 120.00181 * 95.00487 * 3 2 1 14 14 O 1.42097 * 106.40278 * 156.45518 * 13 3 2 15 15 O 1.42097 * 106.40190 * 23.53147 * 13 3 2 16 16 N 1.65604 * 107.21614 * 269.99346 * 13 3 2 17 17 C 1.46926 * 120.62947 * 90.00055 * 16 13 3 18 18 C 1.53192 * 108.77820 * 126.36844 * 17 16 13 19 19 C 1.53043 * 109.30860 * 54.63429 * 18 17 16 20 20 C 1.53037 * 109.53919 * 298.63563 * 19 18 17 21 21 H 1.08997 * 109.49928 * 301.41588 * 20 19 18 22 22 C 1.52998 * 109.50033 * 181.31935 * 20 19 18 23 23 O 1.42898 * 109.46943 * 65.15927 * 22 20 19 24 24 C 1.46925 * 120.63138 * 269.97744 * 16 13 3 25 25 H 1.09000 * 109.47167 * 300.00057 * 1 2 3 26 26 H 1.08996 * 109.47429 * 59.99923 * 1 2 3 27 27 H 1.08998 * 109.47163 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47167 * 239.99943 * 2 1 3 29 29 H 1.09003 * 109.46982 * 119.99591 * 2 1 3 30 30 H 1.09005 * 109.47228 * 34.99838 * 4 3 2 31 31 H 1.08996 * 109.47436 * 155.00957 * 4 3 2 32 32 H 0.96999 * 119.99955 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.58406 * 246.15760 * 17 16 13 34 34 H 1.09002 * 109.59019 * 6.57748 * 17 16 13 35 35 H 1.09001 * 109.49595 * 174.58602 * 18 17 16 36 36 H 1.09000 * 109.49611 * 294.68450 * 18 17 16 37 37 H 1.08997 * 109.45405 * 178.61356 * 19 18 17 38 38 H 1.09002 * 109.44862 * 58.64978 * 19 18 17 39 39 H 1.08996 * 109.47703 * 185.16233 * 22 20 19 40 40 H 1.09006 * 109.46935 * 305.16458 * 22 20 19 41 41 H 0.96710 * 114.00163 * 180.02562 * 23 22 20 42 42 H 1.08998 * 109.58340 * 353.41770 * 24 16 13 43 43 H 1.09003 * 109.58494 * 113.70336 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4946 1.7888 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8528 2.3614 -3.0844 8 7 5.0194 2.0826 -3.6239 9 14 2.6812 3.5332 -3.9467 10 1 2.9449 4.9216 -3.4907 11 1 2.8863 3.4469 -5.4149 12 1 1.2808 3.1624 -3.6199 13 16 2.4121 2.1203 1.4286 14 8 3.3283 3.1571 1.1048 15 8 2.7095 1.0800 2.3499 16 7 1.0430 2.8643 1.9894 17 6 0.1112 2.1500 2.8727 18 6 -0.1149 2.9899 4.1337 19 6 -0.5794 4.3916 3.7315 20 6 0.5043 5.0678 2.8886 21 1 1.4303 5.1207 3.4611 22 6 0.0529 6.4810 2.5147 23 8 -0.0521 7.2760 3.6975 24 6 0.7374 4.2514 1.6135 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3616 1.8097 -1.9454 31 1 2.0921 3.1803 -1.0756 32 1 5.2713 2.4851 -4.4697 33 1 -0.8381 2.0005 2.3581 34 1 0.5359 1.1846 3.1479 35 1 -0.8772 2.5178 4.7534 36 1 0.8170 3.0624 4.6944 37 1 -0.7647 4.9837 4.6277 38 1 -1.4980 4.3165 3.1496 39 1 0.7821 6.9287 1.8396 40 1 -0.9180 6.4338 2.0214 41 1 -0.3349 8.1866 3.5356 42 1 1.5754 4.6725 1.0581 43 1 -0.1594 4.2730 0.9943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337098438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:51 Heat of formation + Delta-G solvation = -161.101773 kcal Electronic energy + Delta-G solvation = -25368.783157 eV Core-core repulsion = 21767.288626 eV Total energy + Delta-G solvation = -3601.494531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.89079 -38.44507 -37.75509 -37.40745 -36.90355 -34.68424 -33.55283 -32.57341 -31.80421 -28.94510 -26.85950 -25.46457 -24.60542 -23.15360 -23.01119 -21.16129 -19.75526 -19.20780 -18.68949 -18.40991 -18.18772 -17.31800 -16.45085 -16.12767 -15.95436 -15.46997 -15.35822 -15.26620 -14.86313 -14.68099 -14.51822 -14.17144 -14.12051 -13.74667 -13.63060 -13.51064 -13.33636 -13.13428 -12.96051 -12.86787 -12.73865 -12.56309 -12.18431 -12.08016 -12.04388 -11.82838 -11.71193 -11.63507 -11.45020 -11.38356 -10.80395 -10.78208 -10.02227 -9.76926 -8.28854 -6.34951 -0.43984 1.36166 1.40706 1.49301 1.98250 2.35694 2.50017 3.04981 3.20573 3.45916 3.62385 3.85426 3.93586 4.02803 4.18813 4.29792 4.34024 4.43511 4.44674 4.50785 4.53852 4.63891 4.67510 4.75354 4.82624 4.86507 4.87832 4.97916 5.03777 5.06955 5.14760 5.25989 5.33933 5.41320 5.44522 5.46981 5.49379 5.60432 5.86716 6.31192 6.67841 6.94833 7.27997 8.89023 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.005718 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.329489 B = 4895.398143 C = 5882.677926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.992 5.992 4 C 0.239 3.761 5 C -0.543 4.543 6 H 0.023 0.977 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.225 1.225 13 S 2.787 3.213 14 O -1.010 7.010 15 O -1.009 7.009 16 N -1.000 6.000 17 C 0.111 3.889 18 C -0.131 4.131 19 C -0.099 4.099 20 C -0.103 4.103 21 H 0.053 0.947 22 C 0.083 3.917 23 O -0.590 6.590 24 C 0.120 3.880 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.267 0.733 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.397 0.603 42 H 0.072 0.928 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.522 5.541 12.159 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.833 5.833 4 C 0.114 3.886 5 C -0.583 4.583 6 H 0.041 0.959 7 C -0.192 4.192 8 N -0.591 5.591 9 Si 0.766 3.234 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.147 1.147 13 S 2.797 3.203 14 O -0.993 6.993 15 O -0.993 6.993 16 N -0.841 5.841 17 C -0.014 4.014 18 C -0.170 4.170 19 C -0.136 4.136 20 C -0.123 4.123 21 H 0.072 0.928 22 C 0.005 3.995 23 O -0.398 6.398 24 C -0.005 4.005 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.247 0.753 42 H 0.090 0.910 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.355 4.972 12.697 23.676 hybrid contribution 0.472 0.797 -1.104 1.442 sum -18.883 5.769 11.593 22.896 Atomic orbital electron populations 1.22202 0.93446 1.03578 1.02792 1.21404 0.96088 0.81215 1.03167 1.57513 1.81637 1.22753 1.21348 1.19154 0.95604 0.91497 0.82356 1.21717 1.02587 1.27839 1.06114 0.95850 1.25980 0.97136 0.98238 0.97861 1.70086 1.23287 1.45981 1.19723 0.85776 0.80989 0.79091 0.77584 1.19246 1.20571 1.14726 1.01510 0.73728 0.72435 0.72596 1.93550 1.61871 1.59124 1.84779 1.93476 1.83939 1.58417 1.63471 1.58002 1.42189 1.22137 1.61774 1.21755 0.93884 0.95109 0.90611 1.21914 1.01989 0.96359 0.96756 1.21417 0.97478 0.94821 0.99913 1.21458 0.99994 0.94180 0.96690 0.92797 1.22093 1.00708 0.89914 0.86780 1.86411 1.91961 1.28185 1.33264 1.21486 1.02839 0.79534 0.96679 0.91519 0.92117 0.89496 0.91166 0.90380 0.92562 0.94878 0.92386 0.88326 0.89835 0.87992 0.93457 0.91186 0.89853 0.93444 0.90892 0.75276 0.90954 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.11 3.53 6.40 86.38 0.55 4.08 16 3 N -0.99 -39.63 2.82 -519.83 -1.47 -41.10 16 4 C 0.24 10.87 4.17 85.63 0.36 11.22 16 5 C -0.54 -31.83 9.94 25.60 0.25 -31.58 16 6 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 7 C 0.01 0.31 5.47 84.66 0.46 0.77 16 8 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 9 Si 0.94 42.20 27.47 68.60 1.88 44.08 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.22 -8.55 6.54 99.48 0.65 -7.90 16 13 S 2.79 111.37 6.10 -56.49 -0.34 111.02 16 14 O -1.01 -49.69 15.70 -128.00 -2.01 -51.69 16 15 O -1.01 -42.74 15.28 -128.00 -1.96 -44.69 16 16 N -1.00 -28.02 3.35 -513.06 -1.72 -29.73 16 17 C 0.11 2.29 5.52 86.36 0.48 2.77 16 18 C -0.13 -2.37 6.08 30.67 0.19 -2.18 16 19 C -0.10 -1.69 5.08 30.62 0.16 -1.54 16 20 C -0.10 -2.23 2.58 -10.72 -0.03 -2.26 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 C 0.08 1.42 6.43 71.98 0.46 1.88 16 23 O -0.59 -10.21 13.18 -148.98 -1.96 -12.17 16 24 C 0.12 2.94 5.76 86.36 0.50 3.44 16 25 H 0.07 1.29 6.44 -2.39 -0.02 1.28 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 29 H 0.08 2.55 6.91 -2.39 -0.02 2.53 16 30 H 0.06 2.31 7.17 -2.38 -0.02 2.29 16 31 H 0.03 1.47 7.04 -2.39 -0.02 1.46 16 32 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.10 1.44 7.50 -2.38 -0.02 1.42 16 34 H 0.08 1.88 6.92 -2.39 -0.02 1.86 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.40 3.13 9.12 -74.05 -0.68 2.45 16 42 H 0.07 2.13 6.91 -2.39 -0.02 2.12 16 43 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -81.60 349.82 -2.89 -84.49 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.27 Total: 16.47 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.12 Total: -16.34 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -2.89 Total: -131.17 kcal Atomic # 8 Polarization: -102.63 SS G_CDS: -5.93 Total: -108.56 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.08 kcal Atomic # 16 Polarization: 111.37 SS G_CDS: -0.34 Total: 111.02 kcal Total: -81.60 -2.89 -84.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337098438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.608 kcal (2) G-P(sol) polarization free energy of solvation -81.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds