Wall clock time and date at job start Fri Apr 10 2020 17:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47271 * 2 1 4 4 N 1.46503 * 109.46676 * 119.99497 * 2 1 3 5 5 C 1.34773 * 120.00345 * 275.00028 * 4 2 1 6 6 O 1.21291 * 119.99906 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00173 * 180.02562 * 5 4 2 8 8 O 1.42899 * 109.46956 * 179.97438 * 7 5 4 9 9 C 1.35902 * 117.00140 * 180.02562 * 8 7 5 10 10 C 1.38729 * 120.05954 * 180.02562 * 9 8 7 11 11 C 1.38149 * 119.94465 * 179.97438 * 10 9 8 12 12 C 1.38263 * 120.05391 * 359.96896 * 11 10 9 13 13 C 1.38262 * 120.11550 * 0.05143 * 12 11 10 14 14 C 1.38147 * 120.05177 * 359.95447 * 13 12 11 15 15 C 1.50693 * 109.47642 * 239.99529 * 2 1 3 16 16 O 1.21293 * 120.00403 * 249.41189 * 15 2 1 17 17 N 1.34784 * 120.00010 * 69.40381 * 15 2 1 18 18 C 1.46498 * 120.00457 * 183.39502 * 17 15 2 19 19 C 1.37102 * 119.99491 * 3.39706 * 17 15 2 20 20 H 1.07995 * 120.00300 * 346.57524 * 19 17 15 21 21 C 1.38955 * 119.99614 * 166.57563 * 19 17 15 22 22 N 1.31415 * 119.99864 * 7.12345 * 21 19 17 23 23 Si 1.86795 * 119.99927 * 187.11828 * 21 19 17 24 24 H 1.48506 * 109.46795 * 60.00334 * 23 21 19 25 25 H 1.48502 * 109.47181 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47358 * 300.00723 * 23 21 19 27 27 H 1.09000 * 109.46342 * 58.46958 * 1 2 3 28 28 H 1.09002 * 109.46959 * 178.46374 * 1 2 3 29 29 H 1.08992 * 109.47175 * 298.47372 * 1 2 3 30 30 H 0.97002 * 119.99820 * 95.00676 * 4 2 1 31 31 H 1.09002 * 109.46890 * 60.00310 * 7 5 4 32 32 H 1.08997 * 109.46957 * 299.99780 * 7 5 4 33 33 H 1.08002 * 120.02697 * 359.69433 * 10 9 8 34 34 H 1.08001 * 119.97100 * 179.97438 * 11 10 9 35 35 H 1.08002 * 119.94191 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.97604 * 179.97438 * 13 12 11 37 37 H 1.08010 * 120.02162 * 180.02562 * 14 13 12 38 38 H 1.09004 * 109.46687 * 5.85290 * 18 17 15 39 39 H 1.08992 * 109.47457 * 125.85696 * 18 17 15 40 40 H 1.09003 * 109.47246 * 245.85940 * 18 17 15 41 41 H 0.97001 * 119.99664 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1586 2.4117 7 6 2.6497 -0.7284 3.5876 8 8 2.6982 0.1900 4.6813 9 6 3.1336 -0.2937 5.8743 10 6 3.2055 0.5428 6.9788 11 6 3.6479 0.0484 8.1906 12 6 4.0183 -1.2789 8.3033 13 6 3.9481 -2.1145 7.2040 14 6 3.5064 -1.6249 5.9900 15 6 2.0325 -0.7105 -1.2303 16 8 2.5829 -1.7863 -1.1271 17 7 1.8701 -0.1504 -2.4455 18 6 2.2912 -0.8739 -3.6477 19 6 1.3107 1.0964 -2.5563 20 1 0.8057 1.5388 -1.7105 21 6 1.3938 1.7908 -3.7571 22 7 1.8825 1.2008 -4.8248 23 14 0.8106 3.5628 -3.8535 24 1 1.5933 4.3938 -2.9036 25 1 1.0056 4.0736 -5.2342 26 1 -0.6299 3.6298 -3.4990 27 1 -0.3632 0.5374 -0.8760 28 1 -0.3633 -1.0273 -0.0276 29 1 -0.3633 0.4899 0.9033 30 1 2.2490 -1.6317 1.1528 31 1 3.6491 -1.1202 3.3980 32 1 1.9775 -1.5506 3.8326 33 1 2.9200 1.5806 6.8902 34 1 3.7044 0.6993 9.0506 35 1 4.3636 -1.6635 9.2516 36 1 4.2384 -3.1508 7.2944 37 1 3.4513 -2.2782 5.1316 38 1 2.6124 -1.8787 -3.3732 39 1 1.4558 -0.9372 -4.3450 40 1 3.1188 -0.3441 -4.1194 41 1 1.9401 1.6854 -5.6631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337544644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:25 Heat of formation + Delta-G solvation = -63.604783 kcal Electronic energy + Delta-G solvation = -24441.486114 eV Core-core repulsion = 20708.775419 eV Total energy + Delta-G solvation = -3732.710695 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.48682 -39.57103 -38.42647 -37.28259 -35.10461 -34.31258 -31.72681 -31.37613 -30.84465 -30.06394 -27.88606 -26.40921 -24.96534 -23.29178 -22.72384 -22.08893 -20.16289 -19.27105 -18.54641 -18.01397 -16.86295 -16.40214 -16.32528 -15.93818 -15.46500 -15.11075 -14.62281 -14.50217 -14.30178 -14.14840 -13.95891 -13.63881 -13.43510 -12.86595 -12.80999 -12.70619 -12.33496 -11.91070 -11.82239 -11.60730 -11.40677 -11.25941 -11.10902 -11.07177 -10.91321 -10.69322 -10.46375 -10.31655 -9.65253 -9.23907 -9.18208 -8.89258 -8.46460 -8.41302 -8.01960 -6.41361 -4.03427 1.10510 1.22678 2.55360 2.74006 3.07282 3.15677 3.17943 3.57020 3.68704 3.74130 4.00071 4.53272 4.65231 4.72027 4.78489 4.87658 4.93171 4.96300 4.98147 5.14642 5.26103 5.41161 5.74058 5.77445 5.79655 5.87645 6.07934 6.17029 6.28464 6.29855 6.35307 6.52346 6.63725 6.70006 6.82990 7.13646 7.18784 7.31403 7.40679 7.62826 7.77573 8.24675 8.41125 8.92468 9.35679 9.73863 10.52137 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.002725 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.475805 B =10274.222542 C =10997.282152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.107 0.893 4 N -0.701 5.701 5 C 0.514 3.486 6 O -0.523 6.523 7 C 0.043 3.957 8 O -0.288 6.288 9 C 0.132 3.868 10 C -0.150 4.150 11 C -0.081 4.081 12 C -0.163 4.163 13 C -0.080 4.080 14 C -0.212 4.212 15 C 0.440 3.560 16 O -0.617 6.617 17 N -0.431 5.431 18 C 0.121 3.879 19 C -0.343 4.343 20 H 0.107 0.893 21 C 0.039 3.961 22 N -0.870 5.870 23 Si 0.926 3.074 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.270 1.270 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.407 0.593 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -4.640 18.239 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.125 0.875 4 N -0.356 5.356 5 C 0.298 3.702 6 O -0.398 6.398 7 C -0.036 4.036 8 O -0.200 6.200 9 C 0.087 3.913 10 C -0.169 4.169 11 C -0.099 4.099 12 C -0.181 4.181 13 C -0.098 4.098 14 C -0.231 4.231 15 C 0.228 3.772 16 O -0.506 6.506 17 N -0.147 5.147 18 C -0.022 4.022 19 C -0.470 4.470 20 H 0.125 0.875 21 C -0.166 4.166 22 N -0.508 5.508 23 Si 0.752 3.248 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.196 1.196 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.244 0.756 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.455 -4.038 17.961 18.466 hybrid contribution -0.127 0.226 -0.379 0.459 sum 1.328 -3.812 17.581 18.039 Atomic orbital electron populations 1.22137 0.93829 1.02285 1.03404 1.20570 0.94987 0.97752 0.83091 0.87549 1.45658 1.66571 1.14835 1.08498 1.19860 0.78913 0.87478 0.83970 1.90746 1.49023 1.15443 1.84631 1.22491 1.03055 0.92422 0.85648 1.86172 1.80626 1.37296 1.15896 1.19127 0.94183 0.92405 0.85628 1.20496 1.05098 1.00351 0.90955 1.20976 0.96817 0.95577 0.96562 1.21064 1.03951 0.94160 0.98959 1.20954 0.97057 0.99676 0.92132 1.21331 1.07096 0.94860 0.99806 1.19740 0.85488 0.87302 0.84681 1.90490 1.50076 1.24046 1.86031 1.43629 1.50912 1.15712 1.04405 1.21604 1.01276 0.93427 0.85888 1.19876 1.35277 0.91939 0.99906 0.87530 1.25384 0.96093 1.00113 0.95001 1.70186 1.43307 1.36553 1.00738 0.85999 0.79381 0.81710 0.77740 1.19461 1.20686 1.19557 0.89302 0.92780 0.92331 0.75621 0.88840 0.88950 0.84975 0.85374 0.86004 0.85772 0.85265 0.94574 0.92031 0.91045 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.14 37.16 0.34 -2.51 16 2 C 0.14 2.86 2.13 -69.08 -0.15 2.72 16 3 H 0.11 2.31 6.89 -51.93 -0.36 1.95 16 4 N -0.70 -11.90 5.00 -54.93 -0.27 -12.18 16 5 C 0.51 8.55 7.87 -10.99 -0.09 8.46 16 6 O -0.52 -10.80 16.16 -14.36 -0.23 -11.03 16 7 C 0.04 0.53 5.22 36.00 0.19 0.72 16 8 O -0.29 -4.16 9.67 -39.34 -0.38 -4.54 16 9 C 0.13 1.62 6.69 -39.22 -0.26 1.36 16 10 C -0.15 -1.66 9.99 -39.43 -0.39 -2.05 16 11 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 12 C -0.16 -1.36 10.04 -39.56 -0.40 -1.76 16 13 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 14 C -0.21 -2.15 9.04 -39.43 -0.36 -2.51 16 15 C 0.44 10.26 7.00 -10.99 -0.08 10.19 16 16 O -0.62 -15.20 15.18 5.55 0.08 -15.12 16 17 N -0.43 -10.68 3.03 -122.19 -0.37 -11.05 16 18 C 0.12 2.94 8.87 59.85 0.53 3.47 16 19 C -0.34 -8.43 8.47 -14.93 -0.13 -8.56 16 20 H 0.11 2.47 4.82 -52.49 -0.25 2.21 16 21 C 0.04 0.96 5.46 -17.46 -0.10 0.87 16 22 N -0.87 -22.02 9.57 55.50 0.53 -21.49 16 23 Si 0.93 19.22 29.56 -169.99 -5.02 14.20 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H 0.09 1.67 5.82 -51.93 -0.30 1.37 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.41 6.29 7.72 -40.82 -0.32 5.98 16 31 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 32 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 38 H 0.04 0.85 6.94 -51.93 -0.36 0.49 16 39 H 0.06 1.52 7.34 -51.93 -0.38 1.14 16 40 H 0.07 1.81 6.83 -51.93 -0.35 1.46 16 41 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -30.68 344.29 -7.28 -37.96 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.12 Total: 9.88 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.68 Total: 8.17 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.11 Total: -44.71 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.53 Total: -30.69 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.68 -7.28 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337544644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.649 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds