Wall clock time and date at job start Fri Apr 10 2020 17:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47271 * 2 1 4 4 N 1.46503 * 109.46676 * 119.99497 * 2 1 3 5 5 C 1.34773 * 120.00345 * 275.00028 * 4 2 1 6 6 O 1.21291 * 119.99906 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00173 * 180.02562 * 5 4 2 8 8 O 1.42899 * 109.46956 * 179.97438 * 7 5 4 9 9 C 1.35902 * 117.00140 * 180.02562 * 8 7 5 10 10 C 1.38729 * 120.05954 * 180.02562 * 9 8 7 11 11 C 1.38149 * 119.94465 * 179.97438 * 10 9 8 12 12 C 1.38263 * 120.05391 * 359.96896 * 11 10 9 13 13 C 1.38262 * 120.11550 * 0.05143 * 12 11 10 14 14 C 1.38147 * 120.05177 * 359.95447 * 13 12 11 15 15 C 1.50693 * 109.47642 * 239.99529 * 2 1 3 16 16 O 1.21293 * 120.00403 * 249.41189 * 15 2 1 17 17 N 1.34784 * 120.00010 * 69.40381 * 15 2 1 18 18 C 1.46498 * 120.00457 * 183.39502 * 17 15 2 19 19 C 1.37102 * 119.99491 * 3.39706 * 17 15 2 20 20 H 1.07995 * 120.00300 * 346.57524 * 19 17 15 21 21 C 1.38955 * 119.99614 * 166.57563 * 19 17 15 22 22 N 1.31415 * 119.99864 * 7.12345 * 21 19 17 23 23 Si 1.86795 * 119.99927 * 187.11828 * 21 19 17 24 24 H 1.48506 * 109.46795 * 60.00334 * 23 21 19 25 25 H 1.48502 * 109.47181 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47358 * 300.00723 * 23 21 19 27 27 H 1.09000 * 109.46342 * 58.46958 * 1 2 3 28 28 H 1.09002 * 109.46959 * 178.46374 * 1 2 3 29 29 H 1.08992 * 109.47175 * 298.47372 * 1 2 3 30 30 H 0.97002 * 119.99820 * 95.00676 * 4 2 1 31 31 H 1.09002 * 109.46890 * 60.00310 * 7 5 4 32 32 H 1.08997 * 109.46957 * 299.99780 * 7 5 4 33 33 H 1.08002 * 120.02697 * 359.69433 * 10 9 8 34 34 H 1.08001 * 119.97100 * 179.97438 * 11 10 9 35 35 H 1.08002 * 119.94191 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.97604 * 179.97438 * 13 12 11 37 37 H 1.08010 * 120.02162 * 180.02562 * 14 13 12 38 38 H 1.09004 * 109.46687 * 5.85290 * 18 17 15 39 39 H 1.08992 * 109.47457 * 125.85696 * 18 17 15 40 40 H 1.09003 * 109.47246 * 245.85940 * 18 17 15 41 41 H 0.97001 * 119.99664 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1586 2.4117 7 6 2.6497 -0.7284 3.5876 8 8 2.6982 0.1900 4.6813 9 6 3.1336 -0.2937 5.8743 10 6 3.2055 0.5428 6.9788 11 6 3.6479 0.0484 8.1906 12 6 4.0183 -1.2789 8.3033 13 6 3.9481 -2.1145 7.2040 14 6 3.5064 -1.6249 5.9900 15 6 2.0325 -0.7105 -1.2303 16 8 2.5829 -1.7863 -1.1271 17 7 1.8701 -0.1504 -2.4455 18 6 2.2912 -0.8739 -3.6477 19 6 1.3107 1.0964 -2.5563 20 1 0.8057 1.5388 -1.7105 21 6 1.3938 1.7908 -3.7571 22 7 1.8825 1.2008 -4.8248 23 14 0.8106 3.5628 -3.8535 24 1 1.5933 4.3938 -2.9036 25 1 1.0056 4.0736 -5.2342 26 1 -0.6299 3.6298 -3.4990 27 1 -0.3632 0.5374 -0.8760 28 1 -0.3633 -1.0273 -0.0276 29 1 -0.3633 0.4899 0.9033 30 1 2.2490 -1.6317 1.1528 31 1 3.6491 -1.1202 3.3980 32 1 1.9775 -1.5506 3.8326 33 1 2.9200 1.5806 6.8902 34 1 3.7044 0.6993 9.0506 35 1 4.3636 -1.6635 9.2516 36 1 4.2384 -3.1508 7.2944 37 1 3.4513 -2.2782 5.1316 38 1 2.6124 -1.8787 -3.3732 39 1 1.4558 -0.9372 -4.3450 40 1 3.1188 -0.3441 -4.1194 41 1 1.9401 1.6854 -5.6631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337544644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:24 Heat of formation + Delta-G solvation = -82.348925 kcal Electronic energy + Delta-G solvation = -24442.298921 eV Core-core repulsion = 20708.775419 eV Total energy + Delta-G solvation = -3733.523502 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58064 -40.92562 -39.96113 -38.19168 -36.94430 -35.92132 -33.55017 -32.48376 -31.88072 -30.95112 -28.98623 -28.25145 -26.79832 -24.66267 -23.58737 -23.00665 -21.52397 -21.07536 -19.60493 -19.40904 -18.42706 -17.47703 -17.42640 -17.14049 -16.70929 -16.50126 -16.23256 -16.01056 -15.63204 -15.50932 -15.22439 -14.82964 -14.56776 -14.30797 -14.16383 -13.67254 -13.60828 -13.43865 -13.41042 -13.16969 -12.75748 -12.66215 -12.49325 -12.46015 -12.15019 -12.11750 -12.08739 -11.82222 -11.06611 -11.01332 -10.53349 -10.16430 -9.96043 -9.93430 -9.19240 -8.29101 -5.97044 0.41148 0.49353 1.37767 1.42294 1.46522 1.48173 1.55679 1.89598 2.24641 2.58343 2.86374 2.97585 3.09248 3.51998 3.88391 4.01010 4.02481 4.05446 4.06709 4.23267 4.27171 4.31687 4.49212 4.55487 4.70022 4.73094 4.82702 4.87282 5.10172 5.11050 5.17422 5.26143 5.36316 5.41305 5.48402 5.49775 5.62232 5.72364 5.84638 6.30978 6.35821 6.49568 7.02267 7.08967 7.47156 7.83819 8.65451 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.002725 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.475805 B =10274.222542 C =10997.282152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.695 5.695 5 C 0.514 3.486 6 O -0.568 6.568 7 C 0.050 3.950 8 O -0.320 6.320 9 C 0.103 3.897 10 C -0.173 4.173 11 C -0.083 4.083 12 C -0.162 4.162 13 C -0.084 4.084 14 C -0.218 4.218 15 C 0.438 3.562 16 O -0.632 6.632 17 N -0.447 5.447 18 C 0.134 3.866 19 C -0.359 4.359 20 H 0.117 0.883 21 C -0.003 4.003 22 N -0.895 5.895 23 Si 0.989 3.011 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.260 1.260 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.417 0.583 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.038 0.962 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 -5.420 20.290 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.042 3.958 3 H 0.105 0.895 4 N -0.350 5.350 5 C 0.300 3.700 6 O -0.447 6.447 7 C -0.028 4.028 8 O -0.233 6.233 9 C 0.059 3.941 10 C -0.191 4.191 11 C -0.101 4.101 12 C -0.180 4.180 13 C -0.102 4.102 14 C -0.236 4.236 15 C 0.226 3.774 16 O -0.522 6.522 17 N -0.163 5.163 18 C -0.009 4.009 19 C -0.485 4.485 20 H 0.135 0.865 21 C -0.205 4.205 22 N -0.534 5.534 23 Si 0.812 3.188 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.184 1.184 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.255 0.745 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.449 -4.854 20.033 20.664 hybrid contribution -0.060 0.395 -0.932 1.014 sum 1.389 -4.460 19.101 19.664 Atomic orbital electron populations 1.22033 0.92176 1.02948 1.03405 1.20335 0.96170 0.96467 0.82803 0.89470 1.45568 1.66492 1.15115 1.07838 1.20610 0.77628 0.86990 0.84768 1.90722 1.50990 1.17574 1.85374 1.22512 1.04889 0.91988 0.83418 1.86105 1.81585 1.38674 1.16972 1.19392 0.95986 0.93727 0.85033 1.20702 1.06222 1.00333 0.91887 1.21294 0.95933 0.96469 0.96387 1.21475 1.02636 0.93772 1.00088 1.21350 0.96148 1.01071 0.91602 1.21577 1.06772 0.94117 1.01150 1.20285 0.84724 0.87123 0.85230 1.90466 1.50526 1.24722 1.86466 1.43852 1.51442 1.16135 1.04890 1.21380 1.00343 0.93248 0.85902 1.20222 1.35718 0.92061 1.00547 0.86528 1.26204 0.96158 1.03590 0.94591 1.70283 1.44131 1.37845 1.01135 0.85040 0.79294 0.76957 0.77513 1.19659 1.20482 1.18442 0.90216 0.91693 0.91356 0.74510 0.86411 0.85638 0.85698 0.83063 0.83281 0.83135 0.83623 0.94352 0.92839 0.92490 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.14 71.98 0.66 -4.53 16 2 C 0.15 5.98 2.13 44.24 0.09 6.08 16 3 H 0.09 3.84 6.89 -2.39 -0.02 3.83 16 4 N -0.70 -23.00 5.00 -446.09 -2.23 -25.23 16 5 C 0.51 16.76 7.87 87.66 0.69 17.45 16 6 O -0.57 -23.71 16.16 15.97 0.26 -23.45 16 7 C 0.05 1.15 5.22 71.24 0.37 1.53 16 8 O -0.32 -9.15 9.67 -73.41 -0.71 -9.86 16 9 C 0.10 2.45 6.69 22.51 0.15 2.60 16 10 C -0.17 -3.75 9.99 22.37 0.22 -3.53 16 11 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 12 C -0.16 -2.21 10.04 22.28 0.22 -1.99 16 13 C -0.08 -1.21 10.04 22.25 0.22 -0.98 16 14 C -0.22 -3.92 9.04 22.37 0.20 -3.72 16 15 C 0.44 20.40 7.00 87.65 0.61 21.01 16 16 O -0.63 -30.87 15.18 -3.07 -0.05 -30.92 16 17 N -0.45 -22.36 3.03 -658.89 -1.99 -24.35 16 18 C 0.13 6.65 8.87 127.77 1.13 7.79 16 19 C -0.36 -17.72 8.47 84.04 0.71 -17.01 16 20 H 0.12 5.40 4.82 -2.91 -0.01 5.39 16 21 C 0.00 -0.15 5.46 84.93 0.46 0.31 16 22 N -0.90 -45.73 9.57 21.67 0.21 -45.52 16 23 Si 0.99 39.17 29.56 68.60 2.03 41.20 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 27 H 0.08 2.96 5.82 -2.39 -0.01 2.94 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.42 12.27 7.72 -92.71 -0.72 11.55 16 31 H 0.12 2.14 7.66 -2.39 -0.02 2.12 16 32 H 0.13 2.05 7.66 -2.39 -0.02 2.03 16 33 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 38 H 0.04 1.83 6.94 -2.39 -0.02 1.81 16 39 H 0.05 2.69 7.34 -2.39 -0.02 2.67 16 40 H 0.06 2.96 6.83 -2.39 -0.02 2.94 16 41 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -66.74 344.29 3.85 -62.90 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.35 Total: 31.33 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 5.98 Total: 23.90 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -4.02 Total: -95.10 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -0.50 Total: -64.23 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -66.74 3.85 -62.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337544644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.453 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds