Wall clock time and date at job start Fri Apr 10 2020 17:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47104 * 2 1 4 4 C 1.50700 * 109.47195 * 240.00161 * 2 1 3 5 5 H 1.07996 * 120.00226 * 272.34464 * 4 2 1 6 6 C 1.37881 * 119.99842 * 92.34657 * 4 2 1 7 7 N 1.31511 * 119.99900 * 179.74965 * 6 4 2 8 8 Si 1.86794 * 120.00079 * 359.75162 * 6 4 2 9 9 H 1.48500 * 109.47347 * 88.63083 * 8 6 4 10 10 H 1.48501 * 109.47321 * 208.63365 * 8 6 4 11 11 H 1.48501 * 109.47279 * 328.62752 * 8 6 4 12 12 N 1.46502 * 109.47018 * 120.00279 * 2 1 3 13 13 C 1.46496 * 120.00085 * 60.00396 * 12 2 1 14 14 S 1.65600 * 119.99902 * 240.00122 * 12 2 1 15 15 O 1.42102 * 106.40142 * 340.32616 * 14 12 2 16 16 O 1.42106 * 106.40106 * 207.40848 * 14 12 2 17 17 N 1.65598 * 107.22022 * 93.86665 * 14 12 2 18 18 C 1.48184 * 118.51251 * 84.72410 * 17 14 12 19 19 C 1.54668 * 110.48969 * 138.65660 * 18 17 14 20 20 O 1.40523 * 110.01003 * 320.90408 * 19 18 17 21 21 C 1.42561 * 113.54683 * 95.18316 * 20 19 18 22 22 C 1.47686 * 113.66535 * 272.24281 * 21 20 19 23 23 H 1.08995 * 109.40067 * 300.75280 * 22 21 20 24 24 C 1.53004 * 109.43654 * 180.86222 * 22 21 20 25 25 C 1.44458 * 118.51796 * 264.99655 * 17 14 12 26 26 H 1.09004 * 109.47263 * 54.59065 * 1 2 3 27 27 H 1.09006 * 109.46972 * 174.58777 * 1 2 3 28 28 H 1.08991 * 109.47392 * 294.59263 * 1 2 3 29 29 H 0.97007 * 120.00289 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46722 * 273.57949 * 13 12 2 31 31 H 1.09004 * 109.47088 * 33.57574 * 13 12 2 32 32 H 1.09002 * 109.47404 * 153.58501 * 13 12 2 33 33 H 1.09000 * 109.23400 * 259.09379 * 18 17 14 34 34 H 1.09000 * 109.22716 * 18.46121 * 18 17 14 35 35 H 1.08993 * 109.41360 * 200.68157 * 19 18 17 36 36 H 1.08997 * 109.24619 * 81.01239 * 19 18 17 37 37 H 1.09000 * 108.64707 * 151.15713 * 21 20 19 38 38 H 1.09007 * 108.53619 * 33.24628 * 21 20 19 39 39 H 1.08997 * 109.46755 * 299.79011 * 24 22 21 40 40 H 1.09004 * 109.46845 * 59.78349 * 24 22 21 41 41 H 1.08988 * 109.47150 * 179.78148 * 24 22 21 42 42 H 1.09007 * 109.49189 * 28.88626 * 25 17 14 43 43 H 1.08993 * 109.50097 * 148.94787 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1763 -1.7806 -1.2152 6 6 2.3082 0.0061 -2.3758 7 7 2.7513 -0.6131 -3.4480 8 14 2.0527 1.8563 -2.4043 9 1 3.2915 2.5342 -1.9449 10 1 1.7347 2.2908 -3.7883 11 1 0.9287 2.2148 -1.5025 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0933 1.4279 14 16 2.9703 0.1141 2.2863 15 8 3.5077 1.2355 1.5986 16 8 3.7775 -0.8704 2.9177 17 7 1.9692 0.7199 3.4581 18 6 1.5870 -0.1611 4.5866 19 6 1.6131 0.6238 5.9191 20 8 2.7087 1.5036 5.9375 21 6 2.3834 2.8271 5.5193 22 6 2.4866 3.0298 4.0600 23 1 3.5050 2.8156 3.7359 24 6 2.1394 4.4810 3.7218 25 6 1.5032 2.0813 3.3308 26 1 -0.3634 0.5955 -0.8376 27 1 -0.3633 -1.0231 -0.0969 28 1 -0.3634 0.4276 0.9344 29 1 2.9458 -0.1091 -4.2537 30 1 0.7055 -2.1456 1.9435 31 1 1.5918 -2.6123 0.4721 32 1 2.4326 -2.5654 2.0405 33 1 0.5835 -0.5503 4.4145 34 1 2.2887 -0.9932 4.6460 35 1 1.6967 -0.0762 6.7503 36 1 0.6893 1.1936 6.0185 37 1 3.0567 3.5252 6.0166 38 1 1.3622 3.0477 5.8304 39 1 1.1206 4.6955 4.0445 40 1 2.8311 5.1492 4.2349 41 1 2.2191 4.6323 2.6454 42 1 1.4522 2.3512 2.2759 43 1 0.5129 2.1701 3.7773 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337743511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:29 Heat of formation + Delta-G solvation = -112.662269 kcal Electronic energy + Delta-G solvation = -26000.435081 eV Core-core repulsion = 22401.041045 eV Total energy + Delta-G solvation = -3599.394036 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.65586 -36.84326 -36.30158 -35.69542 -35.19677 -34.32990 -32.45638 -29.96214 -29.27244 -26.47005 -25.80723 -25.66620 -25.15254 -22.03013 -20.83200 -20.58825 -18.44874 -17.52794 -17.39167 -17.05543 -16.47410 -16.18545 -15.46625 -15.19455 -14.49118 -14.27422 -14.11456 -13.82223 -13.55937 -13.16702 -12.95264 -12.67484 -12.48807 -12.37961 -12.25020 -12.03706 -11.95556 -11.82695 -11.70506 -11.41169 -11.36114 -11.16840 -11.08111 -10.85862 -10.75368 -10.66722 -10.57203 -10.33400 -9.80903 -9.70259 -9.35271 -8.89471 -8.62454 -8.04848 -6.16835 -4.17614 1.10688 3.26179 3.32633 3.35764 3.40946 3.74455 4.01909 4.36452 4.58900 4.64357 4.77955 4.86563 4.94788 5.11274 5.17535 5.18849 5.25850 5.38681 5.44947 5.49555 5.58809 5.61302 5.67702 5.75918 5.86379 6.00651 6.04637 6.11223 6.16868 6.22322 6.32338 6.38489 6.54711 6.63373 6.75775 6.95759 7.17770 7.18767 7.50335 7.65549 8.43266 8.87295 9.44269 10.95237 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.019364 B = 0.006113 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.640875 B = 4578.937520 C = 5301.577859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.519 4.519 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.866 3.134 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.984 5.984 13 C 0.094 3.906 14 S 2.767 3.233 15 O -0.973 6.973 16 O -0.989 6.989 17 N -1.002 6.002 18 C 0.086 3.914 19 C 0.056 3.944 20 O -0.365 6.365 21 C 0.070 3.930 22 C -0.150 4.150 23 H 0.086 0.914 24 C -0.141 4.141 25 C 0.131 3.869 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.024 0.976 29 H 0.267 0.733 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 5.672 17.865 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.131 3.869 3 H 0.074 0.926 4 C -0.558 4.558 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.693 3.307 9 H -0.192 1.192 10 H -0.211 1.211 11 H -0.186 1.186 12 N -0.826 5.826 13 C -0.052 4.052 14 S 2.779 3.221 15 O -0.957 6.957 16 O -0.973 6.973 17 N -0.839 5.839 18 C -0.040 4.040 19 C -0.023 4.023 20 O -0.283 6.283 21 C -0.007 4.007 22 C -0.170 4.170 23 H 0.105 0.895 24 C -0.199 4.199 25 C 0.004 3.996 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.759 5.741 17.737 19.512 hybrid contribution -0.812 0.945 -0.345 1.293 sum -6.571 6.686 17.392 19.758 Atomic orbital electron populations 1.22279 0.98433 1.01264 0.98767 1.19056 0.91052 0.93254 0.83499 0.92630 1.21142 1.44505 0.96476 0.93716 0.89991 1.24975 0.93798 0.98354 0.95514 1.69884 1.43701 1.36324 1.02737 0.87032 0.80012 0.86344 0.77361 1.19198 1.21150 1.18605 1.57895 1.70037 1.19927 1.34745 1.21332 0.98628 0.82309 1.02911 1.02493 0.74032 0.73259 0.72364 1.93573 1.76497 1.52476 1.73162 1.93513 1.65995 1.61093 1.76665 1.57834 1.68629 1.19850 1.37594 1.22582 1.01390 0.93442 0.86540 1.22850 0.89588 0.93360 0.96514 1.87482 1.34543 1.20383 1.85875 1.21601 1.00470 0.84082 0.94500 1.21658 1.02250 0.96414 0.96721 0.89534 1.21670 1.01264 0.94230 1.02762 1.21209 0.96795 0.80129 1.01489 0.92741 0.92811 0.95690 0.92346 0.94421 0.89799 0.91663 0.91165 0.88566 0.88920 0.92742 0.89909 0.93304 0.92553 0.92232 0.91457 0.89617 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.94 37.16 0.33 -2.57 16 2 C 0.24 5.42 2.19 -69.08 -0.15 5.27 16 3 H 0.06 1.36 4.30 -51.93 -0.22 1.13 16 4 C -0.52 -14.17 8.75 -34.44 -0.30 -14.47 16 5 H 0.08 2.39 6.78 -52.49 -0.36 2.03 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 8 Si 0.87 21.45 26.50 -169.99 -4.51 16.94 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.26 -5.95 6.12 56.52 0.35 -5.60 16 12 N -0.98 -20.19 3.12 -115.85 -0.36 -20.55 16 13 C 0.09 1.65 9.87 59.84 0.59 2.24 16 14 S 2.77 55.78 5.98 -107.50 -0.64 55.14 16 15 O -0.97 -22.63 15.05 -57.17 -0.86 -23.49 16 16 O -0.99 -21.46 15.30 -57.17 -0.87 -22.34 16 17 N -1.00 -15.23 2.90 -112.52 -0.33 -15.55 16 18 C 0.09 1.04 6.73 -2.24 -0.02 1.02 16 19 C 0.06 0.57 6.50 38.03 0.25 0.81 16 20 O -0.37 -4.73 10.23 -34.09 -0.35 -5.08 16 21 C 0.07 0.76 5.26 34.59 0.18 0.94 16 22 C -0.15 -1.89 2.88 -92.20 -0.27 -2.15 16 23 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 24 C -0.14 -1.43 9.15 37.16 0.34 -1.09 16 25 C 0.13 1.76 4.59 -4.14 -0.02 1.74 16 26 H 0.05 1.09 6.99 -51.93 -0.36 0.73 16 27 H 0.05 1.01 7.85 -51.93 -0.41 0.61 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.57 6.54 -51.93 -0.34 1.23 16 32 H 0.06 1.09 6.99 -51.93 -0.36 0.73 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.26 6.80 -51.93 -0.35 0.91 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.42 7.27 -51.93 -0.38 0.05 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.75 8.14 -51.94 -0.42 0.33 16 42 H 0.09 1.28 7.43 -51.93 -0.39 0.90 16 43 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -33.89 341.29 -8.11 -42.00 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.94 Total: -0.14 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 0.84 Total: -6.13 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.09 Total: -62.04 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -2.08 Total: -50.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.51 Total: 16.94 kcal Atomic # 16 Polarization: 55.78 SS G_CDS: -0.64 Total: 55.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.89 -8.11 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.662 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds