Wall clock time and date at job start Fri Apr 10 2020 17:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47104 * 2 1 4 4 C 1.50700 * 109.47195 * 240.00161 * 2 1 3 5 5 H 1.07996 * 120.00226 * 272.34464 * 4 2 1 6 6 C 1.37881 * 119.99842 * 92.34657 * 4 2 1 7 7 N 1.31511 * 119.99900 * 179.74965 * 6 4 2 8 8 Si 1.86794 * 120.00079 * 359.75162 * 6 4 2 9 9 H 1.48500 * 109.47347 * 88.63083 * 8 6 4 10 10 H 1.48501 * 109.47321 * 208.63365 * 8 6 4 11 11 H 1.48501 * 109.47279 * 328.62752 * 8 6 4 12 12 N 1.46502 * 109.47018 * 120.00279 * 2 1 3 13 13 C 1.46496 * 120.00085 * 60.00396 * 12 2 1 14 14 S 1.65600 * 119.99902 * 240.00122 * 12 2 1 15 15 O 1.42102 * 106.40142 * 340.32616 * 14 12 2 16 16 O 1.42106 * 106.40106 * 207.40848 * 14 12 2 17 17 N 1.65598 * 107.22022 * 93.86665 * 14 12 2 18 18 C 1.48184 * 118.51251 * 84.72410 * 17 14 12 19 19 C 1.54668 * 110.48969 * 138.65660 * 18 17 14 20 20 O 1.40523 * 110.01003 * 320.90408 * 19 18 17 21 21 C 1.42561 * 113.54683 * 95.18316 * 20 19 18 22 22 C 1.47686 * 113.66535 * 272.24281 * 21 20 19 23 23 H 1.08995 * 109.40067 * 300.75280 * 22 21 20 24 24 C 1.53004 * 109.43654 * 180.86222 * 22 21 20 25 25 C 1.44458 * 118.51796 * 264.99655 * 17 14 12 26 26 H 1.09004 * 109.47263 * 54.59065 * 1 2 3 27 27 H 1.09006 * 109.46972 * 174.58777 * 1 2 3 28 28 H 1.08991 * 109.47392 * 294.59263 * 1 2 3 29 29 H 0.97007 * 120.00289 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46722 * 273.57949 * 13 12 2 31 31 H 1.09004 * 109.47088 * 33.57574 * 13 12 2 32 32 H 1.09002 * 109.47404 * 153.58501 * 13 12 2 33 33 H 1.09000 * 109.23400 * 259.09379 * 18 17 14 34 34 H 1.09000 * 109.22716 * 18.46121 * 18 17 14 35 35 H 1.08993 * 109.41360 * 200.68157 * 19 18 17 36 36 H 1.08997 * 109.24619 * 81.01239 * 19 18 17 37 37 H 1.09000 * 108.64707 * 151.15713 * 21 20 19 38 38 H 1.09007 * 108.53619 * 33.24628 * 21 20 19 39 39 H 1.08997 * 109.46755 * 299.79011 * 24 22 21 40 40 H 1.09004 * 109.46845 * 59.78349 * 24 22 21 41 41 H 1.08988 * 109.47150 * 179.78148 * 24 22 21 42 42 H 1.09007 * 109.49189 * 28.88626 * 25 17 14 43 43 H 1.08993 * 109.50097 * 148.94787 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1763 -1.7806 -1.2152 6 6 2.3082 0.0061 -2.3758 7 7 2.7513 -0.6131 -3.4480 8 14 2.0527 1.8563 -2.4043 9 1 3.2915 2.5342 -1.9449 10 1 1.7347 2.2908 -3.7883 11 1 0.9287 2.2148 -1.5025 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0933 1.4279 14 16 2.9703 0.1141 2.2863 15 8 3.5077 1.2355 1.5986 16 8 3.7775 -0.8704 2.9177 17 7 1.9692 0.7199 3.4581 18 6 1.5870 -0.1611 4.5866 19 6 1.6131 0.6238 5.9191 20 8 2.7087 1.5036 5.9375 21 6 2.3834 2.8271 5.5193 22 6 2.4866 3.0298 4.0600 23 1 3.5050 2.8156 3.7359 24 6 2.1394 4.4810 3.7218 25 6 1.5032 2.0813 3.3308 26 1 -0.3634 0.5955 -0.8376 27 1 -0.3633 -1.0231 -0.0969 28 1 -0.3634 0.4276 0.9344 29 1 2.9458 -0.1091 -4.2537 30 1 0.7055 -2.1456 1.9435 31 1 1.5918 -2.6123 0.4721 32 1 2.4326 -2.5654 2.0405 33 1 0.5835 -0.5503 4.4145 34 1 2.2887 -0.9932 4.6460 35 1 1.6967 -0.0762 6.7503 36 1 0.6893 1.1936 6.0185 37 1 3.0567 3.5252 6.0166 38 1 1.3622 3.0477 5.8304 39 1 1.1206 4.6955 4.0445 40 1 2.8311 5.1492 4.2349 41 1 2.2191 4.6323 2.6454 42 1 1.4522 2.3512 2.2759 43 1 0.5129 2.1701 3.7773 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337743511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:29 Heat of formation + Delta-G solvation = -139.107251 kcal Electronic energy + Delta-G solvation = -26001.581822 eV Core-core repulsion = 22401.041045 eV Total energy + Delta-G solvation = -3600.540777 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54517 -38.50171 -37.99593 -36.94286 -36.65519 -35.27412 -34.51483 -31.69014 -30.15924 -27.35060 -27.28345 -27.04412 -26.68721 -22.99840 -22.35090 -21.75390 -19.85444 -19.26988 -18.92821 -18.22453 -18.05600 -17.22374 -16.93262 -16.36277 -16.05585 -15.40173 -15.33564 -15.01984 -14.75242 -14.63031 -14.51786 -14.35302 -13.87823 -13.69968 -13.54880 -13.40833 -13.19140 -13.16026 -13.08229 -12.92944 -12.76919 -12.55561 -12.46901 -12.43726 -12.09982 -12.03900 -11.75655 -11.64596 -11.51937 -11.26406 -10.79715 -10.58032 -9.97479 -9.67582 -8.34113 -6.38137 -0.42835 1.28180 1.37860 1.40304 1.97914 2.30439 2.46803 3.01651 3.05701 3.30431 3.67305 3.74575 3.88008 4.05469 4.19714 4.23081 4.32402 4.42441 4.44712 4.56480 4.67590 4.68766 4.72583 4.75467 4.77957 4.81040 4.86437 4.88687 4.93443 5.03686 5.11899 5.14620 5.26465 5.33434 5.35417 5.48021 5.56936 5.72076 5.99393 6.31519 6.43374 6.68167 7.27423 8.81813 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.019364 B = 0.006113 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.640875 B = 4578.937520 C = 5301.577859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.237 3.763 3 H 0.044 0.956 4 C -0.521 4.521 5 H 0.049 0.951 6 C 0.020 3.980 7 N -0.940 5.940 8 Si 0.914 3.086 9 H -0.284 1.284 10 H -0.276 1.276 11 H -0.225 1.225 12 N -0.994 5.994 13 C 0.092 3.908 14 S 2.776 3.224 15 O -1.013 7.013 16 O -1.014 7.014 17 N -0.990 5.990 18 C 0.075 3.925 19 C 0.053 3.947 20 O -0.395 6.395 21 C 0.066 3.934 22 C -0.151 4.151 23 H 0.043 0.957 24 C -0.137 4.137 25 C 0.121 3.879 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.267 0.733 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 7.247 20.943 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.132 3.868 3 H 0.062 0.938 4 C -0.561 4.561 5 H 0.067 0.933 6 C -0.179 4.179 7 N -0.580 5.580 8 Si 0.738 3.262 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.147 1.147 12 N -0.835 5.835 13 C -0.054 4.054 14 S 2.788 3.212 15 O -0.997 6.997 16 O -0.997 6.997 17 N -0.831 5.831 18 C -0.049 4.049 19 C -0.025 4.025 20 O -0.313 6.313 21 C -0.010 4.010 22 C -0.172 4.172 23 H 0.062 0.938 24 C -0.195 4.195 25 C -0.005 4.005 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.848 7.294 20.820 23.769 hybrid contribution 0.192 0.358 -1.158 1.227 sum -8.657 7.652 19.662 22.805 Atomic orbital electron populations 1.22128 0.95150 1.02017 1.00673 1.18912 0.93370 0.92050 0.82432 0.93823 1.21483 1.43581 0.95372 0.95675 0.93306 1.25765 0.94076 1.02742 0.95328 1.70016 1.46281 1.38064 1.03599 0.86253 0.80436 0.81067 0.78482 1.20974 1.20186 1.14726 1.57693 1.70057 1.21160 1.34602 1.21480 1.00927 0.80609 1.02341 1.01863 0.74244 0.72412 0.72688 1.93514 1.77858 1.53727 1.74599 1.93474 1.67242 1.61996 1.76994 1.57421 1.67985 1.20816 1.36849 1.22974 1.02628 0.92893 0.86420 1.23077 0.90207 0.93616 0.95633 1.87468 1.36433 1.21544 1.85848 1.21710 1.02673 0.83597 0.93000 1.21679 0.99695 0.97744 0.98088 0.93798 1.21657 1.03301 0.92748 1.01831 1.21503 0.99012 0.78881 1.01101 0.93088 0.92310 0.91829 0.92379 0.90109 0.91885 0.91392 0.87745 0.90293 0.86894 0.89640 0.89173 0.89930 0.89669 0.91167 0.93203 0.91461 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.94 71.98 0.64 -4.47 16 2 C 0.24 10.77 2.19 44.24 0.10 10.87 16 3 H 0.04 2.10 4.30 -2.39 -0.01 2.09 16 4 C -0.52 -29.24 8.75 25.60 0.22 -29.01 16 5 H 0.05 2.99 6.78 -2.91 -0.02 2.97 16 6 C 0.02 1.16 5.47 84.66 0.46 1.63 16 7 N -0.94 -58.74 13.96 21.45 0.30 -58.45 16 8 Si 0.91 44.44 26.50 68.60 1.82 46.26 16 9 H -0.28 -14.46 7.11 99.48 0.71 -13.76 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.22 -9.49 6.12 99.48 0.61 -8.88 16 12 N -0.99 -40.08 3.12 -520.45 -1.62 -41.70 16 13 C 0.09 3.12 9.87 127.77 1.26 4.38 16 14 S 2.78 111.40 5.98 -56.49 -0.34 111.07 16 15 O -1.01 -48.21 15.05 -128.00 -1.93 -50.14 16 16 O -1.01 -44.46 15.30 -128.00 -1.96 -46.42 16 17 N -0.99 -27.66 2.90 -509.91 -1.48 -29.14 16 18 C 0.08 1.54 6.73 86.62 0.58 2.12 16 19 C 0.05 0.84 6.50 72.55 0.47 1.31 16 20 O -0.39 -9.05 10.23 -144.90 -1.48 -10.53 16 21 C 0.07 1.21 5.26 70.32 0.37 1.58 16 22 C -0.15 -3.49 2.88 -11.82 -0.03 -3.53 16 23 H 0.04 1.37 7.88 -2.39 -0.02 1.35 16 24 C -0.14 -2.41 9.15 71.98 0.66 -1.76 16 25 C 0.12 2.88 4.59 87.40 0.40 3.28 16 26 H 0.05 1.89 6.99 -2.38 -0.02 1.87 16 27 H 0.06 2.07 7.85 -2.38 -0.02 2.05 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.39 6.54 -2.38 -0.02 2.38 16 32 H 0.07 2.25 6.99 -2.39 -0.02 2.23 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.91 6.80 -2.39 -0.02 1.89 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 0.84 7.20 -2.39 -0.02 0.82 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 0.95 7.27 -2.38 -0.02 0.94 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.87 7.43 -2.38 -0.02 1.85 16 43 H 0.12 1.79 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -78.61 341.29 -0.66 -79.27 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.89 Total: 13.38 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 5.14 Total: -13.59 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -2.80 Total: -129.28 kcal Atomic # 8 Polarization: -101.73 SS G_CDS: -5.37 Total: -107.10 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.82 Total: 46.26 kcal Atomic # 16 Polarization: 111.40 SS G_CDS: -0.34 Total: 111.07 kcal Total: -78.61 -0.66 -79.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.842 kcal (2) G-P(sol) polarization free energy of solvation -78.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds