Wall clock time and date at job start Fri Apr 10 2020 17:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 S 1.65591 * 120.00485 * 119.99872 * 12 2 1 15 15 O 1.42105 * 106.40740 * 203.54008 * 14 12 2 16 16 O 1.42103 * 106.40291 * 336.46194 * 14 12 2 17 17 N 1.65608 * 107.21947 * 90.00027 * 14 12 2 18 18 C 1.48175 * 118.51333 * 269.73814 * 17 14 12 19 19 C 1.54663 * 110.49046 * 138.65189 * 18 17 14 20 20 O 1.40523 * 110.01139 * 320.89848 * 19 18 17 21 21 C 1.42564 * 113.54210 * 95.18578 * 20 19 18 22 22 C 1.47680 * 113.66380 * 272.24150 * 21 20 19 23 23 H 1.09004 * 109.40476 * 300.75798 * 22 21 20 24 24 C 1.53007 * 109.43655 * 180.86640 * 22 21 20 25 25 C 1.44457 * 118.51239 * 89.99958 * 17 14 12 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 31 31 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 32 32 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 33 33 H 1.08999 * 109.23121 * 259.08546 * 18 17 14 34 34 H 1.09008 * 109.23072 * 18.45535 * 18 17 14 35 35 H 1.09007 * 109.41597 * 200.68113 * 19 18 17 36 36 H 1.09000 * 109.24926 * 81.01347 * 19 18 17 37 37 H 1.09004 * 108.64387 * 151.15998 * 21 20 19 38 38 H 1.09007 * 108.53749 * 33.24661 * 21 20 19 39 39 H 1.08995 * 109.46803 * 299.78411 * 24 22 21 40 40 H 1.09000 * 109.46709 * 59.78585 * 24 22 21 41 41 H 1.08999 * 109.47045 * 179.78506 * 24 22 21 42 42 H 1.09003 * 109.49473 * 28.89642 * 25 17 14 43 43 H 1.08998 * 109.49344 * 148.95028 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6904 1.4975 -2.1192 17 7 4.5438 -0.1041 -1.8181 18 6 5.1487 0.8799 -0.8899 19 6 6.0100 0.1613 0.1749 20 8 5.3793 -1.0267 0.5818 21 6 5.8329 -2.1816 -0.1203 22 6 5.0951 -2.4416 -1.3729 23 1 4.0373 -2.5786 -1.1483 24 6 5.6435 -3.7083 -2.0332 25 6 5.2661 -1.2421 -2.3375 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7006 1.1552 3.4844 30 1 0.7375 -2.1442 -1.9995 31 1 2.4628 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4710 33 1 5.7737 1.5704 -1.4562 34 1 4.3559 1.4392 -0.3930 35 1 6.1408 0.8155 1.0369 36 1 6.9854 -0.0740 -0.2510 37 1 5.7292 -3.0489 0.5318 38 1 6.8885 -2.0500 -0.3584 39 1 6.7009 -3.5713 -2.2594 40 1 5.5234 -4.5528 -1.3547 41 1 5.0968 -3.9028 -2.9559 42 1 4.8723 -1.5057 -3.3192 43 1 6.3236 -0.9928 -2.4248 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337743513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:31 Heat of formation + Delta-G solvation = -132.984507 kcal Electronic energy + Delta-G solvation = -26753.072954 eV Core-core repulsion = 23152.797679 eV Total energy + Delta-G solvation = -3600.275275 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44004 -38.44550 -37.84992 -36.93227 -36.55262 -35.19692 -34.40564 -30.88969 -30.09146 -27.33053 -27.12250 -26.96363 -26.56048 -23.01550 -22.39677 -21.66519 -19.80738 -18.84275 -18.44409 -18.29176 -17.88776 -17.06846 -16.86659 -16.36620 -15.99157 -15.24556 -15.14677 -15.00372 -14.82882 -14.64835 -14.39947 -13.79231 -13.68806 -13.53871 -13.40602 -13.18416 -13.11931 -12.97768 -12.95253 -12.76467 -12.68637 -12.64419 -12.42589 -12.16646 -12.11518 -12.05462 -11.81487 -11.56540 -11.35033 -11.07725 -10.41436 -10.39843 -9.87433 -9.57842 -7.99684 -6.09767 -0.29546 1.47674 1.49581 1.57926 1.94851 2.51656 2.56537 3.14530 3.29972 3.36845 3.70146 3.86311 3.95834 4.11998 4.21947 4.31033 4.38160 4.48798 4.63146 4.68482 4.69799 4.75745 4.78887 4.81732 4.88801 4.95321 4.97951 5.04138 5.10093 5.18047 5.24819 5.27225 5.36307 5.44238 5.64294 5.73328 5.84568 5.95122 6.18157 6.38128 6.62731 6.99004 7.58003 9.05476 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.008433 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.143764 B = 3319.362973 C = 4151.011901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.279 3.721 3 H 0.019 0.981 4 C -0.495 4.495 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.925 5.925 8 Si 0.955 3.045 9 H -0.282 1.282 10 H -0.294 1.294 11 H -0.269 1.269 12 N -0.993 5.993 13 C 0.103 3.897 14 S 2.784 3.216 15 O -1.006 7.006 16 O -1.019 7.019 17 N -0.989 5.989 18 C 0.092 3.908 19 C 0.058 3.942 20 O -0.378 6.378 21 C 0.066 3.934 22 C -0.159 4.159 23 H 0.067 0.933 24 C -0.134 4.134 25 C 0.114 3.886 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.984 -7.598 -7.232 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.174 3.826 3 H 0.037 0.963 4 C -0.535 4.535 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.565 5.565 8 Si 0.782 3.218 9 H -0.208 1.208 10 H -0.220 1.220 11 H -0.193 1.193 12 N -0.834 5.834 13 C -0.042 4.042 14 S 2.794 3.206 15 O -0.990 6.990 16 O -1.003 7.003 17 N -0.829 5.829 18 C -0.033 4.033 19 C -0.021 4.021 20 O -0.295 6.295 21 C -0.010 4.010 22 C -0.180 4.180 23 H 0.085 0.915 24 C -0.192 4.192 25 C -0.012 4.012 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.501 -7.005 -7.727 16.280 hybrid contribution -0.034 -0.118 1.185 1.192 sum 12.467 -7.123 -6.541 15.778 Atomic orbital electron populations 1.21956 0.98267 0.99906 0.99747 1.18328 0.91474 0.91107 0.81645 0.96322 1.21471 1.29506 1.12561 0.89965 0.91337 1.25551 0.95471 0.95720 1.01473 1.70020 1.38261 1.24480 1.23781 0.85610 0.77512 0.79258 0.79419 1.20773 1.21996 1.19323 1.57586 1.65245 1.22101 1.38474 1.21372 0.99983 0.80920 1.01956 1.01620 0.73478 0.72484 0.72977 1.93491 1.86542 1.76245 1.42700 1.93516 1.84853 1.34698 1.87261 1.57380 1.29876 1.35681 1.59938 1.22655 0.98831 0.90422 0.91383 1.22915 0.94776 0.87419 0.97000 1.87681 1.66189 1.15621 1.60012 1.21647 0.97529 0.88575 0.93257 1.21857 1.02294 0.96938 0.96872 0.91453 1.21644 1.01947 0.94915 1.00703 1.21645 0.99372 0.83678 0.96502 0.93856 0.91144 0.96641 0.93186 0.93298 0.90858 0.90716 0.88714 0.92370 0.89056 0.89717 0.90285 0.91029 0.90542 0.91631 0.91841 0.89318 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 8.97 71.98 0.65 -6.23 16 2 C 0.28 13.99 2.63 44.24 0.12 14.11 16 3 H 0.02 1.08 6.91 -2.38 -0.02 1.07 16 4 C -0.50 -25.52 7.99 25.60 0.20 -25.31 16 5 H 0.07 3.47 7.33 -2.91 -0.02 3.45 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -52.44 11.31 21.45 0.24 -52.20 16 8 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.99 -42.04 3.12 -520.42 -1.62 -43.67 16 13 C 0.10 3.68 8.32 127.77 1.06 4.74 16 14 S 2.78 113.01 5.95 -56.49 -0.34 112.67 16 15 O -1.01 -40.89 15.63 -128.00 -2.00 -42.89 16 16 O -1.02 -48.94 15.40 -128.00 -1.97 -50.91 16 17 N -0.99 -31.65 2.90 -509.93 -1.48 -33.13 16 18 C 0.09 2.81 6.46 86.62 0.56 3.37 16 19 C 0.06 1.51 6.50 72.55 0.47 1.98 16 20 O -0.38 -12.18 10.23 -144.90 -1.48 -13.66 16 21 C 0.07 1.58 5.26 70.32 0.37 1.95 16 22 C -0.16 -3.72 2.88 -11.82 -0.03 -3.76 16 23 H 0.07 1.95 5.14 -2.39 -0.01 1.94 16 24 C -0.13 -2.16 9.15 71.98 0.66 -1.50 16 25 C 0.11 2.76 4.97 87.40 0.43 3.19 16 26 H 0.04 1.98 7.67 -2.39 -0.02 1.96 16 27 H 0.07 3.82 6.06 -2.38 -0.01 3.80 16 28 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 2.24 6.05 -2.39 -0.01 2.22 16 32 H 0.07 2.72 7.02 -2.39 -0.02 2.71 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 2.23 7.26 -2.38 -0.02 2.21 16 35 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.08 1.54 7.20 -2.39 -0.02 1.52 16 37 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.07 1.24 7.27 -2.38 -0.02 1.23 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 2.21 6.78 -2.39 -0.02 2.19 16 43 H 0.11 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -68.47 340.06 -0.69 -69.16 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.99 Total: 15.54 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 4.94 Total: -6.17 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -2.86 Total: -129.00 kcal Atomic # 8 Polarization: -102.01 SS G_CDS: -5.45 Total: -107.46 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 113.01 SS G_CDS: -0.34 Total: 112.67 kcal Total: -68.47 -0.69 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.826 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds