Wall clock time and date at job start Fri Apr 10 2020 17:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47215 * 239.99604 * 2 1 3 5 5 H 1.08003 * 119.99849 * 240.00016 * 4 2 1 6 6 C 1.37869 * 119.99896 * 59.99786 * 4 2 1 7 7 N 1.31511 * 120.00399 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00073 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47173 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47148 * 300.00537 * 8 6 4 11 11 H 1.48501 * 109.46992 * 59.99847 * 8 6 4 12 12 N 1.46504 * 109.47175 * 119.99271 * 2 1 3 13 13 C 1.46502 * 119.99515 * 64.54201 * 12 2 1 14 14 S 1.65595 * 120.00442 * 244.53903 * 12 2 1 15 15 O 1.42101 * 106.40666 * 204.97289 * 14 12 2 16 16 O 1.42101 * 106.40058 * 337.89808 * 14 12 2 17 17 N 1.65608 * 107.21698 * 91.43248 * 14 12 2 18 18 C 1.43753 * 120.42704 * 265.72905 * 17 14 12 19 19 C 1.54416 * 115.48672 * 267.75809 * 18 17 14 20 20 O 1.44952 * 110.77041 * 318.58638 * 19 18 17 21 21 C 1.39720 * 115.12711 * 320.84431 * 20 19 18 22 22 C 1.52676 * 106.08302 * 98.22537 * 21 20 19 23 23 H 1.09004 * 108.65526 * 32.79000 * 22 21 20 24 24 C 1.52998 * 108.65167 * 150.78254 * 22 21 20 25 25 C 1.47441 * 113.58830 * 271.61264 * 22 21 20 26 26 H 1.09001 * 109.46727 * 293.59666 * 1 2 3 27 27 H 1.08992 * 109.46814 * 53.59932 * 1 2 3 28 28 H 1.08998 * 109.46977 * 173.60307 * 1 2 3 29 29 H 0.96998 * 120.00803 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47145 * 90.00091 * 13 12 2 31 31 H 1.09002 * 109.46751 * 209.99914 * 13 12 2 32 32 H 1.08997 * 109.47266 * 329.99916 * 13 12 2 33 33 H 1.08999 * 108.28210 * 29.32607 * 18 17 14 34 34 H 1.09002 * 108.27327 * 146.20313 * 18 17 14 35 35 H 1.09010 * 109.21432 * 78.92027 * 19 18 17 36 36 H 1.09003 * 109.21907 * 198.29129 * 19 18 17 37 37 H 1.08994 * 110.12069 * 217.37113 * 21 20 19 38 38 H 1.08999 * 110.11965 * 339.08649 * 21 20 19 39 39 H 1.09001 * 109.47353 * 60.00121 * 24 22 21 40 40 H 1.08999 * 109.47129 * 180.02562 * 24 22 21 41 41 H 1.08999 * 109.46968 * 299.99642 * 24 22 21 42 42 H 1.08997 * 109.98375 * 298.74289 * 25 22 21 43 43 H 1.09004 * 110.01841 * 177.51880 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8299 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8279 -0.4196 -5.2203 10 1 3.8076 -1.1193 -4.0076 11 1 1.8282 -2.5201 -4.0079 12 7 2.0184 -0.6905 1.1963 13 6 1.7483 -2.1187 1.3791 14 16 2.8756 0.1434 2.3417 15 8 3.6796 -0.8140 3.0172 16 8 3.4113 1.2862 1.6889 17 7 1.7867 0.7080 3.4543 18 6 1.2442 2.0339 3.3341 19 6 2.0109 3.1370 4.0956 20 8 2.4206 2.6683 5.4046 21 6 1.4852 1.8706 6.0687 22 6 1.9138 0.4254 5.8264 23 1 3.0015 0.3901 5.7640 24 6 1.4653 -0.4241 7.0171 25 6 1.3491 -0.1590 4.5961 26 1 -0.3633 0.4114 0.9418 27 1 -0.3633 0.6098 -0.8271 28 1 -0.3633 -1.0213 -0.1145 29 1 0.7095 1.1615 -3.4844 30 1 2.5561 -2.7009 0.9358 31 1 1.6812 -2.3424 2.4438 32 1 0.8067 -2.3755 0.8938 33 1 1.2223 2.2998 2.2773 34 1 0.2172 2.0173 3.6989 35 1 2.8943 3.4203 3.5231 36 1 1.3651 4.0073 4.2126 37 1 1.4953 2.0909 7.1361 38 1 0.4896 2.0403 5.6589 39 1 0.3809 -0.3704 7.1140 40 1 1.7653 -1.4599 6.8580 41 1 1.9306 -0.0474 7.9280 42 1 0.2609 -0.1722 4.6555 43 1 1.7259 -1.1724 4.4575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337743516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:36 Heat of formation + Delta-G solvation = -113.311619 kcal Electronic energy + Delta-G solvation = -25783.696026 eV Core-core repulsion = 22184.273831 eV Total energy + Delta-G solvation = -3599.422194 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.61275 -36.78823 -36.16976 -35.66122 -35.20903 -34.16753 -32.58463 -29.19748 -28.96775 -26.60611 -25.82611 -25.46724 -25.17505 -21.99569 -20.75769 -20.58359 -18.46477 -17.58742 -16.95329 -16.74547 -16.26290 -15.81959 -15.38602 -15.21998 -14.86986 -14.31746 -14.10363 -13.54343 -13.46791 -13.22024 -12.85169 -12.80399 -12.38878 -12.27202 -12.05156 -11.90185 -11.75457 -11.50486 -11.38921 -11.34164 -11.27125 -11.22507 -10.98921 -10.85529 -10.74132 -10.55012 -10.42321 -10.29407 -10.02330 -9.55788 -9.25186 -8.88814 -8.47896 -7.98210 -6.09497 -4.15459 1.13108 3.29233 3.33697 3.34530 3.38158 3.85331 4.07546 4.38673 4.67757 4.70673 4.72000 4.92132 5.02774 5.07432 5.22559 5.27039 5.33732 5.46098 5.50736 5.55881 5.58990 5.65249 5.78630 5.81021 5.91924 6.06084 6.13536 6.18025 6.23596 6.35817 6.59705 6.66512 6.79429 6.80546 6.98321 7.33318 7.44099 7.61796 7.76940 8.00097 8.25357 8.86379 9.50294 10.96822 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.004755 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.284954 B = 5886.944792 C = 6203.220241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.060 0.940 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.991 5.991 13 C 0.112 3.888 14 S 2.777 3.223 15 O -0.992 6.992 16 O -0.971 6.971 17 N -1.003 6.003 18 C 0.094 3.906 19 C 0.038 3.962 20 O -0.383 6.383 21 C 0.074 3.926 22 C -0.145 4.145 23 H 0.087 0.913 24 C -0.147 4.147 25 C 0.134 3.866 26 H 0.009 0.991 27 H 0.089 0.911 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 0.193 15.930 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.078 0.922 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.034 4.034 14 S 2.787 3.213 15 O -0.976 6.976 16 O -0.955 6.955 17 N -0.840 5.840 18 C -0.034 4.034 19 C -0.040 4.040 20 O -0.302 6.302 21 C -0.003 4.003 22 C -0.165 4.165 23 H 0.105 0.895 24 C -0.205 4.205 25 C 0.009 3.991 26 H 0.028 0.972 27 H 0.107 0.893 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.313 0.492 15.863 16.213 hybrid contribution -0.448 -0.615 -1.068 1.311 sum -3.761 -0.122 14.795 15.266 Atomic orbital electron populations 1.22110 0.98348 1.00666 0.99309 1.18762 0.91147 0.93129 0.80639 0.92247 1.21264 1.31774 1.13056 0.89969 0.91973 1.24896 0.94922 0.94990 0.98974 1.69854 1.36506 1.22636 1.23905 0.86553 0.79371 0.79577 0.81881 1.21203 1.20151 1.20233 1.57793 1.73610 1.17543 1.34378 1.21119 1.02096 0.81422 0.98806 1.02131 0.73700 0.73214 0.72256 1.93527 1.65990 1.62798 1.75239 1.93581 1.76410 1.51040 1.74494 1.58366 1.64298 1.20583 1.40766 1.21284 0.97421 0.82463 1.02271 1.23911 1.01158 0.95460 0.83446 1.87638 1.42946 1.69088 1.30487 1.22044 0.92639 0.88833 0.96823 1.21293 1.03225 0.96561 0.95434 0.89484 1.21835 1.01167 1.00040 0.97467 1.21019 0.99645 0.93777 0.84619 0.97182 0.89289 0.94658 0.92648 0.93274 0.93637 0.90983 0.89049 0.90999 0.88403 0.91533 0.89937 0.92612 0.92552 0.92184 0.92308 0.90883 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.82 37.16 0.33 -2.87 16 2 C 0.27 6.43 2.65 -69.08 -0.18 6.24 16 3 H 0.06 1.59 6.81 -51.93 -0.35 1.24 16 4 C -0.52 -13.92 8.31 -34.44 -0.29 -14.21 16 5 H 0.06 1.66 7.39 -52.48 -0.39 1.27 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.48 11.39 55.43 0.63 -23.85 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.99 -20.56 3.12 -115.85 -0.36 -20.92 16 13 C 0.11 2.00 9.34 59.85 0.56 2.56 16 14 S 2.78 55.59 5.99 -107.50 -0.64 54.95 16 15 O -0.99 -21.03 16.20 -57.17 -0.93 -21.96 16 16 O -0.97 -22.59 15.52 -57.17 -0.89 -23.48 16 17 N -1.00 -15.46 3.07 -115.81 -0.36 -15.82 16 18 C 0.09 1.29 4.88 -4.76 -0.02 1.27 16 19 C 0.04 0.50 7.28 37.90 0.28 0.78 16 20 O -0.38 -5.31 10.19 -32.17 -0.33 -5.64 16 21 C 0.07 0.80 5.89 36.99 0.22 1.02 16 22 C -0.14 -1.66 2.41 -93.47 -0.23 -1.89 16 23 H 0.09 1.23 7.96 -51.93 -0.41 0.81 16 24 C -0.15 -1.25 8.89 37.16 0.33 -0.92 16 25 C 0.13 1.64 5.18 -4.82 -0.02 1.62 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.09 2.17 6.27 -51.93 -0.33 1.85 16 28 H 0.03 0.75 7.08 -51.93 -0.37 0.38 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.05 0.89 8.03 -51.93 -0.42 0.48 16 31 H 0.04 0.67 7.56 -51.93 -0.39 0.28 16 32 H 0.07 1.24 6.80 -51.93 -0.35 0.88 16 33 H 0.09 1.39 7.55 -51.93 -0.39 1.00 16 34 H 0.07 0.80 7.07 -51.93 -0.37 0.43 16 35 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.75 7.82 -51.93 -0.41 0.34 16 38 H 0.06 0.53 6.34 -51.93 -0.33 0.20 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.12 7.11 -51.93 -0.37 0.75 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -31.85 344.36 -8.80 -40.65 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.97 Total: -0.34 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.87 Total: -4.76 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.09 Total: -60.59 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -2.14 Total: -51.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 55.59 SS G_CDS: -0.64 Total: 54.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.85 -8.80 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.665 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds