Wall clock time and date at job start Fri Apr 10 2020 17:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47215 * 239.99604 * 2 1 3 5 5 H 1.08003 * 119.99849 * 240.00016 * 4 2 1 6 6 C 1.37869 * 119.99896 * 59.99786 * 4 2 1 7 7 N 1.31511 * 120.00399 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00073 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47173 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47148 * 300.00537 * 8 6 4 11 11 H 1.48501 * 109.46992 * 59.99847 * 8 6 4 12 12 N 1.46504 * 109.47175 * 119.99271 * 2 1 3 13 13 C 1.46502 * 119.99515 * 64.54201 * 12 2 1 14 14 S 1.65595 * 120.00442 * 244.53903 * 12 2 1 15 15 O 1.42101 * 106.40666 * 204.97289 * 14 12 2 16 16 O 1.42101 * 106.40058 * 337.89808 * 14 12 2 17 17 N 1.65608 * 107.21698 * 91.43248 * 14 12 2 18 18 C 1.43753 * 120.42704 * 265.72905 * 17 14 12 19 19 C 1.54416 * 115.48672 * 267.75809 * 18 17 14 20 20 O 1.44952 * 110.77041 * 318.58638 * 19 18 17 21 21 C 1.39720 * 115.12711 * 320.84431 * 20 19 18 22 22 C 1.52676 * 106.08302 * 98.22537 * 21 20 19 23 23 H 1.09004 * 108.65526 * 32.79000 * 22 21 20 24 24 C 1.52998 * 108.65167 * 150.78254 * 22 21 20 25 25 C 1.47441 * 113.58830 * 271.61264 * 22 21 20 26 26 H 1.09001 * 109.46727 * 293.59666 * 1 2 3 27 27 H 1.08992 * 109.46814 * 53.59932 * 1 2 3 28 28 H 1.08998 * 109.46977 * 173.60307 * 1 2 3 29 29 H 0.96998 * 120.00803 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47145 * 90.00091 * 13 12 2 31 31 H 1.09002 * 109.46751 * 209.99914 * 13 12 2 32 32 H 1.08997 * 109.47266 * 329.99916 * 13 12 2 33 33 H 1.08999 * 108.28210 * 29.32607 * 18 17 14 34 34 H 1.09002 * 108.27327 * 146.20313 * 18 17 14 35 35 H 1.09010 * 109.21432 * 78.92027 * 19 18 17 36 36 H 1.09003 * 109.21907 * 198.29129 * 19 18 17 37 37 H 1.08994 * 110.12069 * 217.37113 * 21 20 19 38 38 H 1.08999 * 110.11965 * 339.08649 * 21 20 19 39 39 H 1.09001 * 109.47353 * 60.00121 * 24 22 21 40 40 H 1.08999 * 109.47129 * 180.02562 * 24 22 21 41 41 H 1.08999 * 109.46968 * 299.99642 * 24 22 21 42 42 H 1.08997 * 109.98375 * 298.74289 * 25 22 21 43 43 H 1.09004 * 110.01841 * 177.51880 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8299 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8279 -0.4196 -5.2203 10 1 3.8076 -1.1193 -4.0076 11 1 1.8282 -2.5201 -4.0079 12 7 2.0184 -0.6905 1.1963 13 6 1.7483 -2.1187 1.3791 14 16 2.8756 0.1434 2.3417 15 8 3.6796 -0.8140 3.0172 16 8 3.4113 1.2862 1.6889 17 7 1.7867 0.7080 3.4543 18 6 1.2442 2.0339 3.3341 19 6 2.0109 3.1370 4.0956 20 8 2.4206 2.6683 5.4046 21 6 1.4852 1.8706 6.0687 22 6 1.9138 0.4254 5.8264 23 1 3.0015 0.3901 5.7640 24 6 1.4653 -0.4241 7.0171 25 6 1.3491 -0.1590 4.5961 26 1 -0.3633 0.4114 0.9418 27 1 -0.3633 0.6098 -0.8271 28 1 -0.3633 -1.0213 -0.1145 29 1 0.7095 1.1615 -3.4844 30 1 2.5561 -2.7009 0.9358 31 1 1.6812 -2.3424 2.4438 32 1 0.8067 -2.3755 0.8938 33 1 1.2223 2.2998 2.2773 34 1 0.2172 2.0173 3.6989 35 1 2.8943 3.4203 3.5231 36 1 1.3651 4.0073 4.2126 37 1 1.4953 2.0909 7.1361 38 1 0.4896 2.0403 5.6589 39 1 0.3809 -0.3704 7.1140 40 1 1.7653 -1.4599 6.8580 41 1 1.9306 -0.0474 7.9280 42 1 0.2609 -0.1722 4.6555 43 1 1.7259 -1.1724 4.4575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337743516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:35 Heat of formation + Delta-G solvation = -136.546073 kcal Electronic energy + Delta-G solvation = -25784.703547 eV Core-core repulsion = 22184.273831 eV Total energy + Delta-G solvation = -3600.429716 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58864 -38.44947 -37.89658 -36.90552 -36.70665 -35.16103 -34.52596 -30.96186 -30.01446 -27.53901 -27.23282 -27.05379 -26.58911 -23.15984 -22.48939 -21.50015 -19.88281 -19.00666 -18.60598 -18.21199 -17.79941 -17.03086 -16.80096 -16.51747 -16.15722 -15.74315 -15.15049 -15.02158 -14.85871 -14.67894 -14.33833 -13.85710 -13.73845 -13.61797 -13.41280 -13.27966 -13.17215 -13.06922 -12.99867 -12.78953 -12.67797 -12.65937 -12.36941 -12.29020 -12.19845 -12.16989 -11.93148 -11.64843 -11.37662 -11.13802 -10.53426 -10.51456 -10.03023 -9.66483 -8.12942 -6.25778 -0.41176 1.42261 1.44425 1.51266 1.97380 2.41123 2.52007 2.96909 3.16018 3.31873 3.61266 3.80990 3.85652 4.03390 4.13404 4.21092 4.39705 4.46246 4.50388 4.62622 4.68680 4.72464 4.79131 4.80231 4.83201 4.97465 4.99981 5.02949 5.09668 5.13878 5.16399 5.18689 5.33467 5.36964 5.57930 5.62204 5.79702 5.88018 6.12489 6.29317 6.43117 6.81107 7.42981 8.91618 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.004755 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.284954 B = 5886.944792 C = 6203.220241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.271 3.729 3 H 0.025 0.975 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.281 1.281 10 H -0.281 1.281 11 H -0.266 1.266 12 N -0.997 5.997 13 C 0.106 3.894 14 S 2.786 3.214 15 O -1.010 7.010 16 O -1.014 7.014 17 N -0.997 5.997 18 C 0.086 3.914 19 C 0.038 3.962 20 O -0.406 6.406 21 C 0.069 3.931 22 C -0.146 4.146 23 H 0.051 0.949 24 C -0.140 4.140 25 C 0.126 3.874 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -0.498 17.604 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.167 3.833 3 H 0.043 0.957 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.191 1.191 12 N -0.839 5.839 13 C -0.040 4.040 14 S 2.797 3.203 15 O -0.993 6.993 16 O -0.998 6.998 17 N -0.837 5.837 18 C -0.041 4.041 19 C -0.040 4.040 20 O -0.325 6.325 21 C -0.008 4.008 22 C -0.166 4.166 23 H 0.070 0.930 24 C -0.198 4.198 25 C 0.004 3.996 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.242 -0.226 17.546 18.313 hybrid contribution 0.171 -0.383 -1.475 1.533 sum -5.071 -0.609 16.071 16.863 Atomic orbital electron populations 1.21874 0.96562 1.00607 0.99843 1.18446 0.92344 0.91370 0.81142 0.95725 1.21590 1.31912 1.13111 0.91491 0.92694 1.25601 0.95165 0.95687 1.01526 1.69966 1.37159 1.23507 1.24434 0.85683 0.78391 0.79115 0.78876 1.20576 1.20658 1.19082 1.57678 1.73554 1.18772 1.33879 1.21315 1.01992 0.79624 1.01048 1.01570 0.74009 0.72337 0.72361 1.93493 1.67100 1.63353 1.75374 1.93519 1.77885 1.52529 1.75835 1.58015 1.63641 1.21627 1.40384 1.21504 0.99437 0.81610 1.01544 1.23913 1.00624 0.96298 0.83169 1.87623 1.44597 1.69720 1.30536 1.22303 0.93004 0.87670 0.97823 1.21263 1.01038 0.97924 0.96377 0.93044 1.21791 1.02653 0.99242 0.96152 1.21403 1.01822 0.93043 0.83380 0.94193 0.91809 0.94149 0.92599 0.94337 0.90314 0.90254 0.91102 0.87094 0.91046 0.88234 0.87934 0.90472 0.90226 0.92325 0.91607 0.87237 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.82 71.98 0.63 -5.00 16 2 C 0.27 13.29 2.65 44.24 0.12 13.40 16 3 H 0.02 1.39 6.81 -2.38 -0.02 1.37 16 4 C -0.54 -29.38 8.31 25.60 0.21 -29.17 16 5 H 0.05 2.98 7.39 -2.91 -0.02 2.95 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -50.77 11.39 21.44 0.24 -50.53 16 8 Si 0.95 43.20 29.54 68.60 2.03 45.22 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 12 N -1.00 -41.36 3.12 -520.43 -1.62 -42.98 16 13 C 0.11 3.66 9.34 127.77 1.19 4.85 16 14 S 2.79 112.95 5.99 -56.49 -0.34 112.61 16 15 O -1.01 -43.20 16.20 -128.00 -2.07 -45.27 16 16 O -1.01 -49.29 15.52 -128.00 -1.99 -51.28 16 17 N -1.00 -29.45 3.07 -520.32 -1.60 -31.04 16 18 C 0.09 2.25 4.88 87.37 0.43 2.67 16 19 C 0.04 0.95 7.28 72.46 0.53 1.48 16 20 O -0.41 -10.67 10.19 -138.01 -1.41 -12.08 16 21 C 0.07 1.27 5.89 71.87 0.42 1.70 16 22 C -0.15 -3.00 2.41 -12.64 -0.03 -3.03 16 23 H 0.05 1.43 7.96 -2.38 -0.02 1.41 16 24 C -0.14 -1.92 8.89 71.98 0.64 -1.28 16 25 C 0.13 2.75 5.18 83.98 0.44 3.18 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 3.12 6.27 -2.39 -0.01 3.11 16 28 H 0.04 1.67 7.08 -2.39 -0.02 1.66 16 29 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.04 1.39 8.03 -2.39 -0.02 1.37 16 31 H 0.08 2.16 7.56 -2.39 -0.02 2.14 16 32 H 0.08 2.61 6.80 -2.39 -0.02 2.59 16 33 H 0.07 2.16 7.55 -2.39 -0.02 2.14 16 34 H 0.11 2.02 7.07 -2.39 -0.02 2.00 16 35 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 1.49 7.82 -2.39 -0.02 1.47 16 38 H 0.08 1.10 6.34 -2.39 -0.02 1.09 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 1.95 7.11 -2.38 -0.02 1.94 16 Total: -1.00 -70.99 344.36 -0.74 -71.74 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.99 Total: 13.25 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.03 Total: -9.63 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -2.98 Total: -124.56 kcal Atomic # 8 Polarization: -103.16 SS G_CDS: -5.47 Total: -108.63 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 112.95 SS G_CDS: -0.34 Total: 112.61 kcal Total: -70.99 -0.74 -71.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.811 kcal (2) G-P(sol) polarization free energy of solvation -70.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds