Wall clock time and date at job start Fri Apr 10 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47061 * 2 1 4 4 C 1.50699 * 109.47108 * 120.00310 * 2 1 3 5 5 H 1.08002 * 119.99703 * 120.00270 * 4 2 1 6 6 C 1.37873 * 120.00189 * 299.99932 * 4 2 1 7 7 N 1.31520 * 120.00095 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00416 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46756 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47127 * 119.99742 * 8 6 4 11 11 H 1.48495 * 109.47120 * 240.00317 * 8 6 4 12 12 N 1.46495 * 109.46987 * 240.00265 * 2 1 3 13 13 C 1.46497 * 120.00219 * 299.99752 * 12 2 1 14 14 S 1.65611 * 120.00057 * 120.00123 * 12 2 1 15 15 O 1.42095 * 106.40120 * 156.45918 * 14 12 2 16 16 O 1.42098 * 106.39710 * 23.53632 * 14 12 2 17 17 N 1.65599 * 107.21381 * 270.00018 * 14 12 2 18 18 C 1.46501 * 120.00141 * 65.00270 * 17 14 12 19 19 H 1.08998 * 109.46592 * 334.85670 * 18 17 14 20 20 C 1.52995 * 109.47242 * 94.86305 * 18 17 14 21 21 C 1.53003 * 109.46722 * 214.86286 * 18 17 14 22 22 H 1.08998 * 110.75072 * 180.99064 * 21 18 17 23 23 C 1.55305 * 110.84735 * 304.45338 * 21 18 17 24 24 C 1.55211 * 100.82652 * 152.18230 * 23 21 18 25 25 O 1.43644 * 105.25672 * 323.82005 * 24 23 21 26 26 C 1.43237 * 109.97721 * 24.28480 * 25 24 23 27 27 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46899 * 299.99739 * 1 2 3 29 29 H 1.08997 * 109.47418 * 59.99800 * 1 2 3 30 30 H 0.96998 * 120.00054 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47363 * 269.99955 * 13 12 2 32 32 H 1.09002 * 109.47116 * 30.00371 * 13 12 2 33 33 H 1.09003 * 109.47482 * 150.00309 * 13 12 2 34 34 H 0.97005 * 119.99991 * 244.99504 * 17 14 12 35 35 H 1.09000 * 109.46720 * 294.89578 * 20 18 17 36 36 H 1.09004 * 109.47279 * 174.90064 * 20 18 17 37 37 H 1.09001 * 109.47350 * 54.89636 * 20 18 17 38 38 H 1.08999 * 111.13024 * 270.24764 * 23 21 18 39 39 H 1.09004 * 111.12380 * 34.41211 * 23 21 18 40 40 H 1.08999 * 110.36821 * 204.80264 * 24 23 21 41 41 H 1.08994 * 110.12597 * 82.70985 * 24 23 21 42 42 H 1.09002 * 109.82912 * 238.77824 * 26 25 24 43 43 H 1.08995 * 109.91088 * 117.84119 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2865 3.6037 10 1 3.1473 -0.1859 4.8161 11 1 1.1678 -1.5869 4.8164 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.7117 -0.8787 -2.9815 16 8 3.5793 1.1830 -1.5748 17 7 1.9606 0.8092 -3.3997 18 6 1.0291 1.8620 -2.9873 19 1 0.8084 1.7562 -1.9252 20 6 1.6615 3.2315 -3.2431 21 6 -0.2666 1.7404 -3.7920 22 1 -0.9692 2.5258 -3.5137 23 6 0.0247 1.7745 -5.3171 24 6 -1.1705 0.9468 -5.8607 25 8 -1.3972 -0.0785 -4.8805 26 6 -0.9002 0.3450 -3.6056 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7096 1.1616 3.4845 31 1 2.4157 -2.7376 -0.9718 32 1 0.6904 -2.3002 -0.9848 33 1 1.6238 -2.2851 -2.5003 34 1 1.9860 0.5192 -4.3251 35 1 2.5346 3.3538 -2.6020 36 1 0.9357 4.0140 -3.0216 37 1 1.9649 3.3023 -4.2876 38 1 0.0051 2.7955 -5.6981 39 1 0.9735 1.2896 -5.5468 40 1 -0.9170 0.5011 -6.8226 41 1 -2.0524 1.5800 -5.9568 42 1 -0.1473 -0.3585 -3.2500 43 1 -1.7192 0.4036 -2.8887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337747042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:38 Heat of formation + Delta-G solvation = -123.378294 kcal Electronic energy + Delta-G solvation = -25865.975785 eV Core-core repulsion = 22266.117067 eV Total energy + Delta-G solvation = -3599.858718 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80476 -36.80860 -36.25714 -36.06228 -35.20831 -32.59178 -31.55359 -29.71488 -29.10622 -28.80422 -25.60860 -25.17688 -23.25906 -22.58016 -20.79676 -20.25511 -18.94117 -17.48654 -16.82749 -16.52431 -16.47299 -16.21768 -15.41282 -14.91781 -14.69372 -14.36712 -13.90601 -13.62776 -13.39272 -13.15860 -13.06319 -12.88087 -12.60344 -12.10562 -11.99371 -11.74257 -11.58178 -11.50466 -11.40027 -11.31565 -11.22372 -11.04258 -10.98442 -10.91306 -10.81815 -10.55541 -10.43220 -10.29379 -10.03575 -9.54126 -9.36358 -9.25130 -8.47125 -7.99560 -6.09524 -4.15281 1.20250 3.27145 3.35521 3.39723 3.49301 3.82678 4.11273 4.27518 4.39353 4.59523 4.79645 4.97134 5.03806 5.08800 5.22244 5.25289 5.37518 5.45503 5.49086 5.58096 5.65144 5.69199 5.76851 5.87054 5.91491 6.07375 6.15889 6.29052 6.37143 6.40747 6.60420 6.71310 6.76639 6.95095 6.95674 7.14981 7.46610 7.61422 7.76768 8.01458 8.25579 8.87340 9.50810 10.96251 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.005317 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.155475 B = 5265.191229 C = 5606.196183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.266 3.734 3 H 0.059 0.941 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.110 3.890 14 S 2.777 3.223 15 O -0.998 6.998 16 O -0.972 6.972 17 N -1.130 6.130 18 C 0.159 3.841 19 H 0.100 0.900 20 C -0.168 4.168 21 C -0.126 4.126 22 H 0.096 0.904 23 C -0.151 4.151 24 C 0.051 3.949 25 O -0.385 6.385 26 C 0.053 3.947 27 H 0.035 0.965 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.262 0.738 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.407 0.593 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 2.958 -14.367 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.834 5.834 13 C -0.036 4.036 14 S 2.786 3.214 15 O -0.982 6.982 16 O -0.955 6.955 17 N -0.889 5.889 18 C 0.052 3.948 19 H 0.117 0.883 20 C -0.227 4.227 21 C -0.146 4.146 22 H 0.114 0.886 23 C -0.189 4.189 24 C -0.026 4.026 25 O -0.305 6.305 26 C -0.024 4.024 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.241 0.759 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.130 2.996 -14.056 14.954 hybrid contribution -0.074 -0.361 0.568 0.677 sum -4.204 2.635 -13.488 14.372 Atomic orbital electron populations 1.22205 0.98308 0.99962 1.00587 1.18756 0.91205 0.92960 0.80740 0.92345 1.21363 1.31411 1.12957 0.89997 0.91903 1.24894 0.94962 0.95004 0.98996 1.69854 1.36712 1.22731 1.23674 0.86450 0.78607 0.79689 0.82720 1.19749 1.20929 1.21019 1.57703 1.70077 1.19916 1.35695 1.21140 1.01682 0.81970 0.98836 1.02055 0.73617 0.73208 0.72557 1.93548 1.69643 1.60143 1.74834 1.93599 1.73754 1.55777 1.72395 1.56448 1.57061 1.51410 1.23965 1.20639 0.87343 0.87353 0.99483 0.88254 1.22294 1.02179 0.95853 1.02402 1.23034 0.97480 0.98640 0.95436 0.88581 1.23359 0.99303 1.01371 0.94883 1.23383 0.96663 0.89837 0.92718 1.88404 1.82433 1.41033 1.18598 1.23282 0.98514 0.94950 0.85605 0.94588 0.88814 0.96930 0.92776 0.93293 0.90929 0.93282 0.75902 0.90715 0.91693 0.92404 0.89703 0.90220 0.90020 0.92422 0.90196 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.83 37.16 0.33 -2.86 16 2 C 0.27 6.18 1.91 -69.09 -0.13 6.05 16 3 H 0.06 1.50 6.75 -51.93 -0.35 1.15 16 4 C -0.52 -13.62 8.37 -34.44 -0.29 -13.91 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.11 11.32 55.43 0.63 -23.48 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.99 -19.78 3.12 -115.86 -0.36 -20.14 16 13 C 0.11 1.94 9.53 59.85 0.57 2.51 16 14 S 2.78 52.82 6.00 -107.50 -0.65 52.17 16 15 O -1.00 -20.59 17.21 -57.17 -0.98 -21.57 16 16 O -0.97 -21.83 16.04 -57.17 -0.92 -22.75 16 17 N -1.13 -15.93 4.50 -4.89 -0.02 -15.95 16 18 C 0.16 2.09 2.59 -67.93 -0.18 1.92 16 19 H 0.10 1.53 5.49 -51.93 -0.29 1.24 16 20 C -0.17 -2.03 9.26 37.16 0.34 -1.68 16 21 C -0.13 -1.36 2.89 -88.67 -0.26 -1.62 16 22 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 23 C -0.15 -1.35 5.69 -24.34 -0.14 -1.49 16 24 C 0.05 0.48 7.78 38.33 0.30 0.78 16 25 O -0.39 -5.03 11.36 -35.23 -0.40 -5.43 16 26 C 0.05 0.67 6.73 37.88 0.26 0.92 16 27 H 0.04 0.73 6.66 -51.93 -0.35 0.38 16 28 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 29 H 0.01 0.21 6.17 -51.93 -0.32 -0.11 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 33 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 34 H 0.41 4.86 6.75 -34.47 -0.23 4.62 16 35 H 0.07 1.08 7.71 -51.93 -0.40 0.68 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.59 7.61 -51.93 -0.39 0.20 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.71 6.05 -51.93 -0.31 0.40 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.10 7.09 -51.93 -0.37 0.73 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -31.43 342.81 -8.41 -39.84 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.56 Total: 4.04 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 0.71 Total: -7.79 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.24 Total: -59.57 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -2.30 Total: -49.75 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.65 Total: 52.17 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.43 -8.41 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337747042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.542 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds