Wall clock time and date at job start Fri Apr 10 2020 17:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47061 * 2 1 4 4 C 1.50699 * 109.47108 * 120.00310 * 2 1 3 5 5 H 1.08002 * 119.99703 * 120.00270 * 4 2 1 6 6 C 1.37873 * 120.00189 * 299.99932 * 4 2 1 7 7 N 1.31520 * 120.00095 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00416 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46756 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47127 * 119.99742 * 8 6 4 11 11 H 1.48495 * 109.47120 * 240.00317 * 8 6 4 12 12 N 1.46495 * 109.46987 * 240.00265 * 2 1 3 13 13 C 1.46497 * 120.00219 * 299.99752 * 12 2 1 14 14 S 1.65611 * 120.00057 * 120.00123 * 12 2 1 15 15 O 1.42095 * 106.40120 * 156.45918 * 14 12 2 16 16 O 1.42098 * 106.39710 * 23.53632 * 14 12 2 17 17 N 1.65599 * 107.21381 * 270.00018 * 14 12 2 18 18 C 1.46501 * 120.00141 * 65.00270 * 17 14 12 19 19 H 1.08998 * 109.46592 * 334.85670 * 18 17 14 20 20 C 1.52995 * 109.47242 * 94.86305 * 18 17 14 21 21 C 1.53003 * 109.46722 * 214.86286 * 18 17 14 22 22 H 1.08998 * 110.75072 * 180.99064 * 21 18 17 23 23 C 1.55305 * 110.84735 * 304.45338 * 21 18 17 24 24 C 1.55211 * 100.82652 * 152.18230 * 23 21 18 25 25 O 1.43644 * 105.25672 * 323.82005 * 24 23 21 26 26 C 1.43237 * 109.97721 * 24.28480 * 25 24 23 27 27 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46899 * 299.99739 * 1 2 3 29 29 H 1.08997 * 109.47418 * 59.99800 * 1 2 3 30 30 H 0.96998 * 120.00054 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47363 * 269.99955 * 13 12 2 32 32 H 1.09002 * 109.47116 * 30.00371 * 13 12 2 33 33 H 1.09003 * 109.47482 * 150.00309 * 13 12 2 34 34 H 0.97005 * 119.99991 * 244.99504 * 17 14 12 35 35 H 1.09000 * 109.46720 * 294.89578 * 20 18 17 36 36 H 1.09004 * 109.47279 * 174.90064 * 20 18 17 37 37 H 1.09001 * 109.47350 * 54.89636 * 20 18 17 38 38 H 1.08999 * 111.13024 * 270.24764 * 23 21 18 39 39 H 1.09004 * 111.12380 * 34.41211 * 23 21 18 40 40 H 1.08999 * 110.36821 * 204.80264 * 24 23 21 41 41 H 1.08994 * 110.12597 * 82.70985 * 24 23 21 42 42 H 1.09002 * 109.82912 * 238.77824 * 26 25 24 43 43 H 1.08995 * 109.91088 * 117.84119 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2865 3.6037 10 1 3.1473 -0.1859 4.8161 11 1 1.1678 -1.5869 4.8164 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.7117 -0.8787 -2.9815 16 8 3.5793 1.1830 -1.5748 17 7 1.9606 0.8092 -3.3997 18 6 1.0291 1.8620 -2.9873 19 1 0.8084 1.7562 -1.9252 20 6 1.6615 3.2315 -3.2431 21 6 -0.2666 1.7404 -3.7920 22 1 -0.9692 2.5258 -3.5137 23 6 0.0247 1.7745 -5.3171 24 6 -1.1705 0.9468 -5.8607 25 8 -1.3972 -0.0785 -4.8805 26 6 -0.9002 0.3450 -3.6056 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7096 1.1616 3.4845 31 1 2.4157 -2.7376 -0.9718 32 1 0.6904 -2.3002 -0.9848 33 1 1.6238 -2.2851 -2.5003 34 1 1.9860 0.5192 -4.3251 35 1 2.5346 3.3538 -2.6020 36 1 0.9357 4.0140 -3.0216 37 1 1.9649 3.3023 -4.2876 38 1 0.0051 2.7955 -5.6981 39 1 0.9735 1.2896 -5.5468 40 1 -0.9170 0.5011 -6.8226 41 1 -2.0524 1.5800 -5.9568 42 1 -0.1473 -0.3585 -3.2500 43 1 -1.7192 0.4036 -2.8887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337747042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:37 Heat of formation + Delta-G solvation = -147.019096 kcal Electronic energy + Delta-G solvation = -25867.000927 eV Core-core repulsion = 22266.117067 eV Total energy + Delta-G solvation = -3600.883860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70451 -38.38226 -37.89371 -37.24705 -36.86353 -34.51397 -32.54087 -30.94301 -30.58007 -29.73158 -27.27253 -27.01279 -24.23026 -23.39808 -22.54105 -21.26837 -20.33291 -19.01169 -18.48703 -18.08619 -17.59409 -17.34981 -16.92099 -16.39027 -15.86621 -15.59471 -15.26372 -15.01637 -14.73634 -14.54556 -14.38653 -13.95189 -13.76624 -13.62365 -13.35352 -13.17633 -13.15656 -13.00265 -12.96432 -12.78754 -12.67774 -12.58197 -12.28215 -12.17174 -12.13687 -11.98956 -11.84257 -11.68267 -11.54649 -11.11614 -10.59246 -10.46165 -10.37863 -9.67046 -8.10944 -6.23086 -0.32190 1.41014 1.44475 1.54332 2.04470 2.43965 2.63783 3.00621 3.17768 3.40181 3.45079 3.74450 3.94912 4.05765 4.14204 4.34234 4.38438 4.43046 4.45591 4.56419 4.68669 4.83664 4.85985 4.91251 4.93477 4.98068 5.03045 5.04301 5.05459 5.14218 5.17669 5.21229 5.35514 5.41001 5.63581 5.72466 5.90367 6.08946 6.14377 6.20127 6.33710 6.84124 7.45634 8.93096 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.005317 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.155475 B = 5265.191229 C = 5606.196183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.274 3.726 3 H 0.029 0.971 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.997 5.997 13 C 0.105 3.895 14 S 2.792 3.208 15 O -1.015 7.015 16 O -1.010 7.010 17 N -1.110 6.110 18 C 0.155 3.845 19 H 0.074 0.926 20 C -0.167 4.167 21 C -0.118 4.118 22 H 0.115 0.885 23 C -0.145 4.145 24 C 0.044 3.956 25 O -0.407 6.407 26 C 0.049 3.951 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.420 0.580 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 3.262 -16.025 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.577 4.577 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.839 5.839 13 C -0.040 4.040 14 S 2.801 3.199 15 O -0.999 6.999 16 O -0.994 6.994 17 N -0.874 5.874 18 C 0.048 3.952 19 H 0.092 0.908 20 C -0.225 4.225 21 C -0.138 4.138 22 H 0.133 0.867 23 C -0.183 4.183 24 C -0.032 4.032 25 O -0.327 6.327 26 C -0.027 4.027 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.258 0.742 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.080 3.282 -15.734 16.856 hybrid contribution 0.212 -0.441 0.996 1.109 sum -4.868 2.841 -14.738 15.779 Atomic orbital electron populations 1.21974 0.96651 1.00215 1.00760 1.18422 0.92290 0.91310 0.80966 0.95298 1.21679 1.31491 1.12918 0.91655 0.92935 1.25556 0.95264 0.95713 1.01398 1.69956 1.37287 1.23520 1.24219 0.85616 0.78261 0.78590 0.79797 1.19776 1.21022 1.20037 1.57579 1.70036 1.20935 1.35303 1.21294 1.01637 0.80513 1.00590 1.01353 0.73559 0.72490 0.72456 1.93515 1.70592 1.60789 1.74960 1.93553 1.75098 1.57001 1.73702 1.55938 1.56520 1.51237 1.23691 1.20753 0.88355 0.87410 0.98660 0.90780 1.22282 1.01487 0.95610 1.03169 1.22995 0.96081 0.98225 0.96543 0.86719 1.23388 0.99010 1.02856 0.93019 1.23615 0.97524 0.89577 0.92470 1.88384 1.82626 1.42609 1.19114 1.23243 0.98126 0.95579 0.85765 0.94167 0.91432 0.93892 0.92660 0.94192 0.90302 0.90625 0.74188 0.93751 0.89528 0.90108 0.87103 0.90244 0.88697 0.91049 0.91689 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 8.83 71.98 0.64 -5.15 16 2 C 0.27 12.97 1.91 44.24 0.08 13.06 16 3 H 0.03 1.55 6.75 -2.39 -0.02 1.53 16 4 C -0.54 -28.82 8.37 25.60 0.21 -28.60 16 5 H 0.05 2.85 7.65 -2.91 -0.02 2.83 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -49.97 11.32 21.45 0.24 -49.73 16 8 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 N -1.00 -40.01 3.12 -520.47 -1.62 -41.63 16 13 C 0.11 3.66 9.53 127.77 1.22 4.88 16 14 S 2.79 106.46 6.00 -56.49 -0.34 106.12 16 15 O -1.01 -41.43 17.21 -128.00 -2.20 -43.64 16 16 O -1.01 -46.56 16.04 -128.00 -2.05 -48.61 16 17 N -1.11 -30.00 4.50 -169.39 -0.76 -30.76 16 18 C 0.16 3.85 2.59 44.99 0.12 3.97 16 19 H 0.07 2.25 5.49 -2.39 -0.01 2.24 16 20 C -0.17 -3.71 9.26 71.98 0.67 -3.04 16 21 C -0.12 -2.24 2.89 -9.53 -0.03 -2.27 16 22 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 23 C -0.15 -2.05 5.69 32.14 0.18 -1.87 16 24 C 0.04 0.70 7.78 72.74 0.57 1.26 16 25 O -0.41 -9.74 11.36 -148.98 -1.69 -11.43 16 26 C 0.05 1.16 6.73 72.45 0.49 1.64 16 27 H 0.04 1.62 6.66 -2.39 -0.02 1.61 16 28 H 0.07 3.25 6.07 -2.39 -0.01 3.23 16 29 H 0.04 1.50 6.17 -2.39 -0.01 1.49 16 30 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 2.62 6.43 -2.39 -0.02 2.60 16 33 H 0.08 2.20 7.79 -2.39 -0.02 2.18 16 34 H 0.42 9.19 6.75 -96.74 -0.65 8.54 16 35 H 0.04 1.27 7.71 -2.39 -0.02 1.25 16 36 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.08 1.41 7.61 -2.39 -0.02 1.39 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.14 6.05 -2.38 -0.01 1.12 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 1.69 7.09 -2.39 -0.02 1.68 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -68.43 342.81 -1.45 -69.87 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.36 Total: 19.15 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.59 Total: -14.56 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -2.14 Total: -122.12 kcal Atomic # 8 Polarization: -97.73 SS G_CDS: -5.95 Total: -103.67 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 106.46 SS G_CDS: -0.34 Total: 106.12 kcal Total: -68.43 -1.45 -69.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337747042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.147 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds