Wall clock time and date at job start Fri Apr 10 2020 17:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46820 * 2 1 4 4 C 1.50696 * 109.47364 * 240.00414 * 2 1 3 5 5 H 1.07995 * 120.00067 * 275.00068 * 4 2 1 6 6 C 1.37876 * 120.00051 * 94.99504 * 4 2 1 7 7 N 1.31518 * 119.99911 * 184.90781 * 6 4 2 8 8 Si 1.86797 * 120.00212 * 4.90755 * 6 4 2 9 9 H 1.48502 * 109.47105 * 84.81276 * 8 6 4 10 10 H 1.48499 * 109.47389 * 204.81391 * 8 6 4 11 11 H 1.48501 * 109.47122 * 324.81735 * 8 6 4 12 12 N 1.46501 * 109.47247 * 119.99658 * 2 1 3 13 13 C 1.46499 * 119.99659 * 60.00459 * 12 2 1 14 14 S 1.65597 * 119.99996 * 240.00332 * 12 2 1 15 15 O 1.42104 * 106.40574 * 336.45876 * 14 12 2 16 16 O 1.42102 * 106.40008 * 203.54296 * 14 12 2 17 17 N 1.65599 * 107.21832 * 90.00533 * 14 12 2 18 18 C 1.46495 * 120.00221 * 64.99653 * 17 14 12 19 19 C 1.52996 * 109.47132 * 265.00205 * 18 17 14 20 20 C 1.52998 * 109.47038 * 300.00084 * 19 18 17 21 21 C 1.53006 * 109.47078 * 299.99608 * 20 19 18 22 22 O 1.42897 * 109.47082 * 179.97438 * 21 20 19 23 23 C 1.53004 * 109.46759 * 60.00076 * 21 20 19 24 24 C 1.52995 * 109.47444 * 300.00138 * 23 21 20 25 25 H 1.09001 * 109.46883 * 175.10761 * 1 2 3 26 26 H 1.08998 * 109.47154 * 295.10571 * 1 2 3 27 27 H 1.08993 * 109.47187 * 55.10446 * 1 2 3 28 28 H 0.97001 * 120.00317 * 180.02562 * 7 6 4 29 29 H 1.08990 * 109.47361 * 269.99847 * 13 12 2 30 30 H 1.09000 * 109.46993 * 30.00102 * 13 12 2 31 31 H 1.09002 * 109.47024 * 149.99688 * 13 12 2 32 32 H 0.97001 * 119.99710 * 244.99309 * 17 14 12 33 33 H 1.08998 * 109.47124 * 25.00209 * 18 17 14 34 34 H 1.08995 * 109.47584 * 59.99825 * 19 18 17 35 35 H 1.08998 * 109.47523 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.47185 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47381 * 59.99953 * 20 19 18 38 38 H 1.08998 * 109.47297 * 300.00397 * 21 20 19 39 39 H 0.96698 * 113.99848 * 60.00676 * 22 21 20 40 40 H 1.08995 * 109.47032 * 179.97438 * 23 21 20 41 41 H 1.09008 * 109.46965 * 60.00093 * 23 21 20 42 42 H 1.08998 * 109.47023 * 299.99930 * 24 23 21 43 43 H 1.08991 * 109.47396 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1356 -1.7853 -1.2291 6 6 2.3603 0.0123 -2.3580 7 7 2.7061 -0.6129 -3.4622 8 14 2.3132 1.8792 -2.3175 9 1 3.5984 2.3953 -1.7817 10 1 2.1058 2.3992 -3.6929 11 1 1.1978 2.3274 -1.4454 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4280 14 16 2.9704 0.1143 2.2862 15 8 3.5794 1.1831 1.5748 16 8 3.7119 -0.8787 2.9814 17 7 1.9607 0.8091 3.3998 18 6 1.1510 -0.0352 4.2817 19 6 -0.2414 -0.2188 3.6747 20 6 -0.9134 1.1467 3.5179 21 6 -1.0387 1.8140 4.8890 22 8 -1.6658 3.0896 4.7424 23 6 0.3537 1.9975 5.4960 24 6 1.0258 0.6321 5.6528 25 1 -0.3633 -1.0239 -0.0876 26 1 -0.3633 0.4360 0.9306 27 1 -0.3633 0.5879 -0.8428 28 1 2.9372 -0.1046 -4.2554 29 1 0.7378 -2.1444 1.9993 30 1 1.5297 -2.5968 0.4708 31 1 2.4630 -2.5818 1.9863 32 1 1.9054 1.7751 3.4682 33 1 1.6297 -1.0080 4.3934 34 1 -0.1522 -0.6942 2.6980 35 1 -0.8440 -0.8466 4.3311 36 1 -1.9056 1.0159 3.0859 37 1 -0.3110 1.7749 2.8617 38 1 -1.6411 1.1858 5.5452 39 1 -2.5540 3.0498 4.3623 40 1 0.2646 2.4733 6.4726 41 1 0.9562 2.6258 4.8398 42 1 0.4234 0.0038 6.3090 43 1 2.0179 0.7628 6.0848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337776516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:55 Heat of formation + Delta-G solvation = -138.102520 kcal Electronic energy + Delta-G solvation = -25865.824930 eV Core-core repulsion = 22265.327721 eV Total energy + Delta-G solvation = -3600.497208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.54790 -36.76152 -36.48446 -36.17453 -35.26162 -32.50117 -32.45254 -31.02080 -29.96309 -28.43912 -25.70327 -25.17369 -22.93364 -22.40207 -20.72583 -20.02870 -18.57730 -17.51754 -17.45309 -17.36992 -16.49215 -15.99470 -15.41344 -15.20645 -14.53848 -14.27400 -14.15780 -13.73204 -13.47477 -13.38196 -12.95836 -12.67302 -12.49319 -12.29390 -12.07758 -11.96574 -11.83327 -11.67982 -11.54433 -11.36968 -11.35849 -11.21068 -11.09937 -10.87070 -10.79205 -10.66446 -10.41807 -10.30569 -9.94349 -9.80057 -9.40510 -9.28240 -8.60331 -8.07252 -6.17429 -4.17957 1.15474 3.28375 3.35316 3.43592 3.47431 3.96502 4.07600 4.37579 4.52086 4.53871 4.80616 4.90335 4.94463 5.05042 5.15005 5.16704 5.28318 5.31021 5.36292 5.62935 5.64962 5.70997 5.80813 5.90887 5.95145 6.02350 6.05914 6.11562 6.18306 6.25886 6.39072 6.46276 6.56450 6.62974 6.90975 7.12367 7.19387 7.45710 7.51429 7.66428 8.42671 8.86932 9.44349 10.94425 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.005847 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.975944 B = 4787.597197 C = 5323.355819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.236 3.764 3 H 0.055 0.945 4 C -0.517 4.517 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.867 3.133 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.982 5.982 13 C 0.092 3.908 14 S 2.770 3.230 15 O -0.978 6.978 16 O -0.994 6.994 17 N -1.128 6.128 18 C 0.152 3.848 19 C -0.144 4.144 20 C -0.149 4.149 21 C 0.105 3.895 22 O -0.570 6.570 23 C -0.113 4.113 24 C -0.119 4.119 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.410 0.590 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.377 0.623 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 1.973 17.536 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.133 3.867 3 H 0.073 0.927 4 C -0.557 4.557 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.693 3.307 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.824 5.824 13 C -0.055 4.055 14 S 2.780 3.220 15 O -0.962 6.962 16 O -0.978 6.978 17 N -0.887 5.887 18 C 0.044 3.956 19 C -0.183 4.183 20 C -0.187 4.187 21 C 0.046 3.954 22 O -0.376 6.376 23 C -0.151 4.151 24 C -0.158 4.158 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.244 0.756 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.224 0.776 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.978 2.045 17.612 19.443 hybrid contribution -1.003 1.147 -0.456 1.590 sum -8.981 3.191 17.156 19.626 Atomic orbital electron populations 1.22294 0.98331 1.01132 0.99008 1.19070 0.91127 0.93172 0.83348 0.92696 1.21134 1.44171 0.95936 0.94432 0.89992 1.24986 0.93863 0.98404 0.95316 1.69886 1.44914 1.36063 1.01725 0.87019 0.80171 0.86358 0.77133 1.18995 1.21300 1.18899 1.57869 1.69886 1.19808 1.34866 1.21404 0.98813 0.82365 1.02877 1.02300 0.73834 0.73281 0.72586 1.93605 1.74462 1.56154 1.72001 1.93525 1.69184 1.60619 1.74426 1.56372 1.61933 1.17329 1.53049 1.20718 0.91173 0.94142 0.89577 1.22191 0.95877 0.97235 1.03038 1.22203 1.01344 0.97424 0.97689 1.21853 0.93938 0.84072 0.95537 1.86504 1.34428 1.30300 1.86371 1.21458 0.94523 0.97694 1.01431 1.21742 1.01585 0.96058 0.96369 0.92919 0.95177 0.92916 0.92347 0.94324 0.89694 0.91632 0.75606 0.88930 0.89434 0.91029 0.91717 0.90509 0.92908 0.77635 0.91207 0.91081 0.90572 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.91 37.16 0.33 -2.46 16 2 C 0.24 5.27 2.28 -69.08 -0.16 5.11 16 3 H 0.06 1.32 4.06 -51.93 -0.21 1.11 16 4 C -0.52 -13.82 8.72 -34.44 -0.30 -14.12 16 5 H 0.08 2.33 6.82 -52.49 -0.36 1.97 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 8 Si 0.87 21.71 26.99 -169.99 -4.59 17.12 16 9 H -0.26 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.26 -6.17 6.82 56.52 0.39 -5.78 16 12 N -0.98 -18.95 2.79 -115.85 -0.32 -19.27 16 13 C 0.09 1.50 9.57 59.85 0.57 2.07 16 14 S 2.77 52.37 6.12 -107.50 -0.66 51.71 16 15 O -0.98 -22.49 16.70 -57.17 -0.95 -23.44 16 16 O -0.99 -20.13 16.08 -57.17 -0.92 -21.05 16 17 N -1.13 -15.50 4.80 -4.90 -0.02 -15.52 16 18 C 0.15 1.67 3.14 -67.93 -0.21 1.46 16 19 C -0.14 -1.45 5.58 -26.73 -0.15 -1.60 16 20 C -0.15 -1.50 4.73 -26.73 -0.13 -1.62 16 21 C 0.10 0.97 3.47 -26.73 -0.09 0.87 16 22 O -0.57 -5.75 13.32 -35.23 -0.47 -6.22 16 23 C -0.11 -1.07 5.39 -26.73 -0.14 -1.21 16 24 C -0.12 -1.05 5.63 -26.73 -0.15 -1.20 16 25 H 0.05 0.95 7.83 -51.93 -0.41 0.54 16 26 H 0.03 0.47 6.27 -51.93 -0.33 0.14 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.04 0.50 6.22 -51.93 -0.32 0.18 16 30 H 0.08 1.51 6.56 -51.93 -0.34 1.17 16 31 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 32 H 0.41 5.18 6.81 -34.47 -0.23 4.94 16 33 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16 34 H 0.09 1.01 4.32 -51.93 -0.22 0.79 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.93 7.32 -51.93 -0.38 0.55 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 2.36 9.08 45.56 0.41 2.77 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.74 6.51 -51.92 -0.34 0.41 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -34.02 336.31 -8.22 -42.23 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.59 Total: 5.65 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.53 Total: -10.58 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.43 Total: -60.49 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -2.34 Total: -50.71 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.59 Total: 17.12 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.66 Total: 51.71 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.02 -8.22 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337776516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.868 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds