Wall clock time and date at job start Fri Apr 10 2020 17:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46820 * 2 1 4 4 C 1.50696 * 109.47364 * 240.00414 * 2 1 3 5 5 H 1.07995 * 120.00067 * 275.00068 * 4 2 1 6 6 C 1.37876 * 120.00051 * 94.99504 * 4 2 1 7 7 N 1.31518 * 119.99911 * 184.90781 * 6 4 2 8 8 Si 1.86797 * 120.00212 * 4.90755 * 6 4 2 9 9 H 1.48502 * 109.47105 * 84.81276 * 8 6 4 10 10 H 1.48499 * 109.47389 * 204.81391 * 8 6 4 11 11 H 1.48501 * 109.47122 * 324.81735 * 8 6 4 12 12 N 1.46501 * 109.47247 * 119.99658 * 2 1 3 13 13 C 1.46499 * 119.99659 * 60.00459 * 12 2 1 14 14 S 1.65597 * 119.99996 * 240.00332 * 12 2 1 15 15 O 1.42104 * 106.40574 * 336.45876 * 14 12 2 16 16 O 1.42102 * 106.40008 * 203.54296 * 14 12 2 17 17 N 1.65599 * 107.21832 * 90.00533 * 14 12 2 18 18 C 1.46495 * 120.00221 * 64.99653 * 17 14 12 19 19 C 1.52996 * 109.47132 * 265.00205 * 18 17 14 20 20 C 1.52998 * 109.47038 * 300.00084 * 19 18 17 21 21 C 1.53006 * 109.47078 * 299.99608 * 20 19 18 22 22 O 1.42897 * 109.47082 * 179.97438 * 21 20 19 23 23 C 1.53004 * 109.46759 * 60.00076 * 21 20 19 24 24 C 1.52995 * 109.47444 * 300.00138 * 23 21 20 25 25 H 1.09001 * 109.46883 * 175.10761 * 1 2 3 26 26 H 1.08998 * 109.47154 * 295.10571 * 1 2 3 27 27 H 1.08993 * 109.47187 * 55.10446 * 1 2 3 28 28 H 0.97001 * 120.00317 * 180.02562 * 7 6 4 29 29 H 1.08990 * 109.47361 * 269.99847 * 13 12 2 30 30 H 1.09000 * 109.46993 * 30.00102 * 13 12 2 31 31 H 1.09002 * 109.47024 * 149.99688 * 13 12 2 32 32 H 0.97001 * 119.99710 * 244.99309 * 17 14 12 33 33 H 1.08998 * 109.47124 * 25.00209 * 18 17 14 34 34 H 1.08995 * 109.47584 * 59.99825 * 19 18 17 35 35 H 1.08998 * 109.47523 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.47185 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47381 * 59.99953 * 20 19 18 38 38 H 1.08998 * 109.47297 * 300.00397 * 21 20 19 39 39 H 0.96698 * 113.99848 * 60.00676 * 22 21 20 40 40 H 1.08995 * 109.47032 * 179.97438 * 23 21 20 41 41 H 1.09008 * 109.46965 * 60.00093 * 23 21 20 42 42 H 1.08998 * 109.47023 * 299.99930 * 24 23 21 43 43 H 1.08991 * 109.47396 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1356 -1.7853 -1.2291 6 6 2.3603 0.0123 -2.3580 7 7 2.7061 -0.6129 -3.4622 8 14 2.3132 1.8792 -2.3175 9 1 3.5984 2.3953 -1.7817 10 1 2.1058 2.3992 -3.6929 11 1 1.1978 2.3274 -1.4454 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4280 14 16 2.9704 0.1143 2.2862 15 8 3.5794 1.1831 1.5748 16 8 3.7119 -0.8787 2.9814 17 7 1.9607 0.8091 3.3998 18 6 1.1510 -0.0352 4.2817 19 6 -0.2414 -0.2188 3.6747 20 6 -0.9134 1.1467 3.5179 21 6 -1.0387 1.8140 4.8890 22 8 -1.6658 3.0896 4.7424 23 6 0.3537 1.9975 5.4960 24 6 1.0258 0.6321 5.6528 25 1 -0.3633 -1.0239 -0.0876 26 1 -0.3633 0.4360 0.9306 27 1 -0.3633 0.5879 -0.8428 28 1 2.9372 -0.1046 -4.2554 29 1 0.7378 -2.1444 1.9993 30 1 1.5297 -2.5968 0.4708 31 1 2.4630 -2.5818 1.9863 32 1 1.9054 1.7751 3.4682 33 1 1.6297 -1.0080 4.3934 34 1 -0.1522 -0.6942 2.6980 35 1 -0.8440 -0.8466 4.3311 36 1 -1.9056 1.0159 3.0859 37 1 -0.3110 1.7749 2.8617 38 1 -1.6411 1.1858 5.5452 39 1 -2.5540 3.0498 4.3623 40 1 0.2646 2.4733 6.4726 41 1 0.9562 2.6258 4.8398 42 1 0.4234 0.0038 6.3090 43 1 2.0179 0.7628 6.0848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337776516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:55 Heat of formation + Delta-G solvation = -166.781062 kcal Electronic energy + Delta-G solvation = -25867.068525 eV Core-core repulsion = 22265.327721 eV Total energy + Delta-G solvation = -3601.740803 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32851 -38.36322 -37.98828 -37.12388 -36.89715 -34.49586 -33.45216 -31.74987 -31.64474 -29.28778 -27.28605 -26.97036 -23.65638 -23.17752 -22.43964 -21.04046 -19.82672 -19.28326 -18.87856 -18.22211 -18.07154 -17.24895 -16.84014 -16.18219 -16.00239 -15.33273 -15.24720 -15.07160 -14.70765 -14.52491 -14.41039 -14.32454 -13.76065 -13.55104 -13.40447 -13.19250 -13.15583 -13.05470 -12.90863 -12.86224 -12.77178 -12.56036 -12.40998 -12.15411 -12.02379 -11.95644 -11.77806 -11.61766 -11.24078 -11.13708 -10.74921 -10.67417 -10.30612 -9.65845 -8.33064 -6.35220 -0.33599 1.27782 1.37644 1.41558 2.03867 2.30596 2.63004 3.07517 3.32515 3.44037 3.75631 3.82666 4.06827 4.09455 4.18733 4.31315 4.41895 4.47198 4.54892 4.59028 4.59923 4.70318 4.79672 4.83388 4.91161 5.00625 5.02931 5.15257 5.18235 5.23286 5.27085 5.31140 5.39646 5.46553 5.51758 5.54088 5.61401 5.93530 6.16819 6.34434 6.71717 6.95258 7.30194 8.82686 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.005847 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.975944 B = 4787.597197 C = 5323.355819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.240 3.760 3 H 0.041 0.959 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.937 5.937 8 Si 0.910 3.090 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.235 1.235 12 N -0.989 5.989 13 C 0.089 3.911 14 S 2.787 3.213 15 O -1.024 7.024 16 O -1.010 7.010 17 N -1.111 6.111 18 C 0.141 3.859 19 C -0.143 4.143 20 C -0.149 4.149 21 C 0.107 3.893 22 O -0.590 6.590 23 C -0.117 4.117 24 C -0.111 4.111 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.266 0.734 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.417 0.583 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.392 0.608 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.104 0.896 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 2.331 20.377 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.135 3.865 3 H 0.058 0.942 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.175 4.175 7 N -0.577 5.577 8 Si 0.735 3.265 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.158 1.158 12 N -0.831 5.831 13 C -0.057 4.057 14 S 2.797 3.203 15 O -1.008 7.008 16 O -0.993 6.993 17 N -0.875 5.875 18 C 0.034 3.966 19 C -0.182 4.182 20 C -0.187 4.187 21 C 0.049 3.951 22 O -0.399 6.399 23 C -0.155 4.155 24 C -0.150 4.150 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.253 0.747 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.241 0.759 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.123 0.877 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.383 2.392 20.454 23.063 hybrid contribution -0.269 0.957 -1.169 1.534 sum -10.652 3.348 19.285 22.284 Atomic orbital electron populations 1.22138 0.95211 1.01955 1.00566 1.18889 0.93303 0.91867 0.82468 0.94166 1.21482 1.42818 0.95006 0.96170 0.92800 1.25674 0.94386 1.02137 0.95292 1.70002 1.47699 1.37485 1.02544 0.86305 0.80156 0.82154 0.77907 1.20982 1.20445 1.15801 1.57578 1.69899 1.21068 1.34534 1.21567 1.00975 0.80557 1.02555 1.01453 0.73805 0.72423 0.72623 1.93541 1.76096 1.57600 1.73556 1.93504 1.69956 1.61262 1.74561 1.55921 1.61663 1.17931 1.51940 1.21092 0.91342 0.93900 0.90243 1.22191 0.95424 0.97657 1.02881 1.22199 1.01533 0.96985 0.97941 1.21870 0.93954 0.84007 0.95282 1.86471 1.35756 1.31006 1.86632 1.21495 0.94737 0.97787 1.01438 1.21723 1.02128 0.95967 0.95182 0.92123 0.91622 0.93700 0.92446 0.90066 0.91595 0.91336 0.74655 0.88809 0.90811 0.87947 0.90458 0.92898 0.90758 0.75877 0.90616 0.92753 0.87733 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.91 71.98 0.64 -4.29 16 2 C 0.24 10.51 2.28 44.24 0.10 10.61 16 3 H 0.04 1.91 4.06 -2.38 -0.01 1.90 16 4 C -0.51 -28.06 8.72 25.60 0.22 -27.84 16 5 H 0.05 3.18 6.82 -2.91 -0.02 3.16 16 6 C 0.02 1.40 5.47 84.65 0.46 1.87 16 7 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 8 Si 0.91 45.07 26.99 68.60 1.85 46.92 16 9 H -0.28 -14.82 7.11 99.48 0.71 -14.11 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.23 -10.39 6.82 99.48 0.68 -9.71 16 12 N -0.99 -37.18 2.79 -520.45 -1.45 -38.63 16 13 C 0.09 2.78 9.57 127.77 1.22 4.00 16 14 S 2.79 103.10 6.12 -56.49 -0.35 102.76 16 15 O -1.02 -47.31 16.70 -128.00 -2.14 -49.45 16 16 O -1.01 -39.95 16.08 -128.00 -2.06 -42.00 16 17 N -1.11 -28.34 4.80 -169.40 -0.81 -29.15 16 18 C 0.14 2.62 3.14 44.99 0.14 2.76 16 19 C -0.14 -2.26 5.58 30.59 0.17 -2.09 16 20 C -0.15 -2.43 4.73 30.60 0.14 -2.28 16 21 C 0.11 1.57 3.47 30.60 0.11 1.68 16 22 O -0.59 -10.13 13.32 -148.98 -1.98 -12.12 16 23 C -0.12 -1.84 5.39 30.59 0.16 -1.67 16 24 C -0.11 -1.54 5.63 30.59 0.17 -1.37 16 25 H 0.06 2.04 7.83 -2.39 -0.02 2.02 16 26 H 0.06 1.85 6.27 -2.39 -0.01 1.84 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.08 1.85 6.22 -2.39 -0.01 1.83 16 30 H 0.07 2.32 6.56 -2.39 -0.02 2.31 16 31 H 0.07 2.10 7.02 -2.39 -0.02 2.08 16 32 H 0.42 9.88 6.81 -96.75 -0.66 9.22 16 33 H 0.09 1.77 7.50 -2.39 -0.02 1.75 16 34 H 0.07 1.39 4.32 -2.39 -0.01 1.38 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.05 1.13 7.32 -2.39 -0.02 1.11 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 39 H 0.39 3.70 9.08 -74.06 -0.67 3.03 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.03 6.51 -2.38 -0.02 1.01 16 42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -75.79 336.31 -3.41 -79.20 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.32 Total: 18.56 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 3.55 Total: -18.63 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -1.97 Total: -125.25 kcal Atomic # 8 Polarization: -97.39 SS G_CDS: -6.18 Total: -103.57 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.85 Total: 46.92 kcal Atomic # 16 Polarization: 103.10 SS G_CDS: -0.35 Total: 102.76 kcal Total: -75.79 -3.41 -79.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337776516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.580 kcal (2) G-P(sol) polarization free energy of solvation -75.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds