Wall clock time and date at job start Fri Apr 10 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53011 * 109.46850 * 264.99617 * 18 17 14 20 20 C 1.52998 * 109.47038 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.46985 * 60.00265 * 20 19 18 22 22 O 1.42902 * 109.46946 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.47242 * 299.99567 * 21 20 19 24 24 C 1.53005 * 109.47172 * 144.99882 * 18 17 14 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 30 30 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 31 31 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 32 32 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 33 33 H 1.08997 * 109.47474 * 24.99725 * 18 17 14 34 34 H 1.09004 * 109.46863 * 300.00082 * 19 18 17 35 35 H 1.08999 * 109.46652 * 60.00103 * 19 18 17 36 36 H 1.08998 * 109.46961 * 300.00326 * 20 19 18 37 37 H 1.08991 * 109.47044 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47049 * 59.99698 * 21 20 19 39 39 H 0.96695 * 113.99746 * 299.99892 * 22 21 20 40 40 H 1.09005 * 109.47238 * 300.00667 * 23 21 20 41 41 H 1.08996 * 109.47307 * 179.97438 * 23 21 20 42 42 H 1.08991 * 109.47012 * 299.99638 * 24 18 17 43 43 H 1.08998 * 109.47221 * 60.00104 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 5.0178 -2.0781 -0.4542 20 6 5.6355 -3.4777 -0.4790 21 6 7.1113 -3.3769 -0.8700 22 8 7.6884 -4.6840 -0.8926 23 6 7.2292 -2.7427 -2.2574 24 6 6.6115 -1.3426 -2.2324 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 0.7376 -2.1442 -1.9996 30 1 2.4629 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4711 32 1 5.0733 0.6551 -1.5281 33 1 4.6088 -2.0612 -2.5693 34 1 5.5447 -1.4608 0.2734 35 1 3.9664 -2.1503 -0.1759 36 1 5.1082 -4.0946 -1.2066 37 1 5.5519 -3.9292 0.5094 38 1 7.6385 -2.7598 -0.1424 39 1 7.6489 -5.1460 -0.0441 40 1 6.7019 -3.3597 -2.9850 41 1 8.2806 -2.6705 -2.5357 42 1 6.6955 -0.8908 -3.2207 43 1 7.1384 -0.7254 -1.5047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337776517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:57 Heat of formation + Delta-G solvation = -145.055228 kcal Electronic energy + Delta-G solvation = -25569.325715 eV Core-core repulsion = 21968.527015 eV Total energy + Delta-G solvation = -3600.798700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.20604 -36.72162 -36.35397 -36.05089 -35.25049 -32.95709 -32.63233 -30.84622 -29.10033 -27.74034 -25.51658 -25.23024 -22.80254 -22.06312 -20.81336 -20.12832 -18.75346 -17.34910 -17.19645 -16.85816 -16.47398 -16.10898 -15.29033 -14.82263 -14.54396 -14.42628 -13.94427 -13.52890 -13.32343 -13.20311 -12.82863 -12.51042 -12.30065 -12.12430 -11.99613 -11.81303 -11.75577 -11.53939 -11.38060 -11.24174 -11.20266 -11.06404 -10.99045 -10.91341 -10.66992 -10.46237 -10.39663 -10.21959 -10.10318 -9.82058 -9.28785 -9.12177 -8.51370 -7.97543 -6.12665 -4.21121 1.26108 3.20662 3.26963 3.27761 3.47017 4.05276 4.17310 4.31138 4.61407 4.69461 4.94736 5.03452 5.08960 5.17566 5.19064 5.27564 5.35904 5.44090 5.55298 5.64147 5.79164 5.87038 5.96903 6.09981 6.11460 6.14202 6.16069 6.29500 6.43502 6.59950 6.63631 6.86179 6.86943 7.10365 7.25410 7.51889 7.52673 7.60884 7.76381 8.02804 8.22982 8.81386 9.44900 10.92364 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.006764 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.852983 B = 4138.622079 C = 5730.733037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.525 4.525 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.990 5.990 13 C 0.105 3.895 14 S 2.782 3.218 15 O -1.000 7.000 16 O -0.983 6.983 17 N -1.124 6.124 18 C 0.154 3.846 19 C -0.145 4.145 20 C -0.148 4.148 21 C 0.102 3.898 22 O -0.572 6.572 23 C -0.109 4.109 24 C -0.120 4.120 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.412 0.588 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.377 0.623 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 -7.298 -5.321 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.564 4.564 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.791 3.209 15 O -0.983 6.983 16 O -0.967 6.967 17 N -0.881 5.881 18 C 0.047 3.953 19 C -0.184 4.184 20 C -0.187 4.187 21 C 0.043 3.957 22 O -0.378 6.378 23 C -0.147 4.147 24 C -0.159 4.159 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.245 0.755 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.224 0.776 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.597 -6.648 -6.651 13.436 hybrid contribution 0.502 -0.485 2.137 2.248 sum 10.099 -7.133 -4.514 13.162 Atomic orbital electron populations 1.22053 0.98045 0.99618 1.00711 1.18707 0.91809 0.92744 0.80110 0.92390 1.21360 1.31888 1.13105 0.90084 0.91707 1.24917 0.94990 0.94956 0.98923 1.69871 1.36114 1.22535 1.23882 0.86631 0.79091 0.79699 0.82351 1.21309 1.20301 1.20322 1.57698 1.64527 1.21245 1.39754 1.21222 0.99008 0.82165 1.01786 1.01802 0.72678 0.73094 0.73363 1.93540 1.86075 1.76408 1.42274 1.93592 1.83676 1.32533 1.86879 1.56105 1.32288 1.14637 1.85030 1.20749 0.94448 0.82889 0.97248 1.22219 1.04099 0.94944 0.97169 1.22232 0.96064 0.98231 1.02166 1.21901 0.92554 0.83626 0.97577 1.86477 1.82786 1.30231 1.38270 1.21437 1.01578 0.95561 0.96125 1.21780 0.94837 0.96646 1.02621 0.96936 0.94903 0.88980 0.92596 0.93846 0.93305 0.90175 0.75523 0.89532 0.90939 0.88663 0.91042 0.91406 0.92694 0.77632 0.90926 0.91113 0.90647 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.27 6.32 2.62 -69.09 -0.18 6.14 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.53 -12.71 7.99 -34.44 -0.28 -12.98 16 5 H 0.06 1.48 5.58 -52.49 -0.29 1.19 16 6 C 0.07 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.76 11.32 55.43 0.63 -23.14 16 8 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.99 -19.60 2.79 -115.85 -0.32 -19.92 16 13 C 0.10 1.78 8.14 59.85 0.49 2.27 16 14 S 2.78 53.17 6.07 -107.50 -0.65 52.52 16 15 O -1.00 -20.18 16.55 -57.17 -0.95 -21.13 16 16 O -0.98 -22.11 16.70 -57.17 -0.95 -23.07 16 17 N -1.12 -17.03 5.53 -4.88 -0.03 -17.06 16 18 C 0.15 2.04 2.81 -67.92 -0.19 1.85 16 19 C -0.15 -1.95 5.53 -26.73 -0.15 -2.10 16 20 C -0.15 -1.67 5.55 -26.73 -0.15 -1.81 16 21 C 0.10 1.07 3.47 -26.73 -0.09 0.98 16 22 O -0.57 -6.02 13.32 -35.23 -0.47 -6.49 16 23 C -0.11 -1.13 5.58 -26.70 -0.15 -1.28 16 24 C -0.12 -1.29 5.46 -26.70 -0.15 -1.43 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 27 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.72 7.35 -51.92 -0.38 0.34 16 31 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 32 H 0.41 5.56 8.84 -34.47 -0.30 5.26 16 33 H 0.09 1.18 7.06 -51.93 -0.37 0.81 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.49 4.85 -51.93 -0.25 1.24 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.38 2.53 9.08 45.56 0.41 2.95 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -30.86 344.72 -9.16 -40.02 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.98 Total: 8.26 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.60 Total: -9.86 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.28 Total: -60.12 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -2.37 Total: -50.69 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 53.17 SS G_CDS: -0.65 Total: 52.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.86 -9.16 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337776517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.038 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds