Wall clock time and date at job start Fri Apr 10 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53011 * 109.46850 * 264.99617 * 18 17 14 20 20 C 1.52998 * 109.47038 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.46985 * 60.00265 * 20 19 18 22 22 O 1.42902 * 109.46946 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.47242 * 299.99567 * 21 20 19 24 24 C 1.53005 * 109.47172 * 144.99882 * 18 17 14 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 30 30 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 31 31 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 32 32 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 33 33 H 1.08997 * 109.47474 * 24.99725 * 18 17 14 34 34 H 1.09004 * 109.46863 * 300.00082 * 19 18 17 35 35 H 1.08999 * 109.46652 * 60.00103 * 19 18 17 36 36 H 1.08998 * 109.46961 * 300.00326 * 20 19 18 37 37 H 1.08991 * 109.47044 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47049 * 59.99698 * 21 20 19 39 39 H 0.96695 * 113.99746 * 299.99892 * 22 21 20 40 40 H 1.09005 * 109.47238 * 300.00667 * 23 21 20 41 41 H 1.08996 * 109.47307 * 179.97438 * 23 21 20 42 42 H 1.08991 * 109.47012 * 299.99638 * 24 18 17 43 43 H 1.08998 * 109.47221 * 60.00104 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 5.0178 -2.0781 -0.4542 20 6 5.6355 -3.4777 -0.4790 21 6 7.1113 -3.3769 -0.8700 22 8 7.6884 -4.6840 -0.8926 23 6 7.2292 -2.7427 -2.2574 24 6 6.6115 -1.3426 -2.2324 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 0.7376 -2.1442 -1.9996 30 1 2.4629 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4711 32 1 5.0733 0.6551 -1.5281 33 1 4.6088 -2.0612 -2.5693 34 1 5.5447 -1.4608 0.2734 35 1 3.9664 -2.1503 -0.1759 36 1 5.1082 -4.0946 -1.2066 37 1 5.5519 -3.9292 0.5094 38 1 7.6385 -2.7598 -0.1424 39 1 7.6489 -5.1460 -0.0441 40 1 6.7019 -3.3597 -2.9850 41 1 8.2806 -2.6705 -2.5357 42 1 6.6955 -0.8908 -3.2207 43 1 7.1384 -0.7254 -1.5047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337776517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:57 Heat of formation + Delta-G solvation = -169.367292 kcal Electronic energy + Delta-G solvation = -25570.379966 eV Core-core repulsion = 21968.527015 eV Total energy + Delta-G solvation = -3601.852951 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12981 -38.31444 -37.89684 -37.16744 -36.89276 -34.47064 -34.01901 -31.76091 -30.88561 -28.74798 -27.22759 -26.96984 -23.70722 -23.03522 -22.58784 -21.12667 -20.18948 -18.75458 -18.37977 -18.26594 -18.05689 -17.43652 -16.92634 -16.17305 -15.74072 -15.39480 -15.19149 -14.97601 -14.75287 -14.51699 -14.30508 -13.70604 -13.59037 -13.45858 -13.24415 -13.20684 -13.13369 -13.03664 -12.96234 -12.82207 -12.69353 -12.65771 -12.23131 -12.19615 -12.07842 -12.04682 -11.89627 -11.58019 -11.30294 -11.08480 -10.68898 -10.45305 -10.30415 -9.62012 -8.04968 -6.18705 -0.26468 1.47993 1.48770 1.55447 2.01629 2.48082 2.64724 3.24099 3.32846 3.45504 3.69494 3.83430 4.04995 4.11021 4.18814 4.28925 4.32780 4.45795 4.56261 4.62019 4.72096 4.79709 4.87455 4.99302 5.00391 5.01324 5.12712 5.17054 5.20187 5.25129 5.26235 5.28743 5.40819 5.55440 5.65467 5.74273 5.88655 6.09846 6.22399 6.33288 6.91193 6.92872 7.50553 8.99672 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.006764 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.852983 B = 4138.622079 C = 5730.733037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.275 3.725 3 H 0.024 0.976 4 C -0.521 4.521 5 H 0.079 0.921 6 C 0.016 3.984 7 N -0.921 5.921 8 Si 0.954 3.046 9 H -0.295 1.295 10 H -0.269 1.269 11 H -0.269 1.269 12 N -0.994 5.994 13 C 0.099 3.901 14 S 2.796 3.204 15 O -1.009 7.009 16 O -1.021 7.021 17 N -1.113 6.113 18 C 0.149 3.851 19 C -0.143 4.143 20 C -0.143 4.143 21 C 0.105 3.895 22 O -0.584 6.584 23 C -0.107 4.107 24 C -0.113 4.113 25 H 0.015 0.985 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.261 0.739 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.421 0.579 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.393 0.607 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.742 -9.141 -5.324 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.171 3.829 3 H 0.041 0.959 4 C -0.561 4.561 5 H 0.097 0.903 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.221 1.221 10 H -0.194 1.194 11 H -0.194 1.194 12 N -0.835 5.835 13 C -0.046 4.046 14 S 2.805 3.195 15 O -0.992 6.992 16 O -1.005 7.005 17 N -0.874 5.874 18 C 0.042 3.958 19 C -0.183 4.183 20 C -0.181 4.181 21 C 0.047 3.953 22 O -0.392 6.392 23 C -0.146 4.146 24 C -0.153 4.153 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.256 0.744 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.242 0.758 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.340 -8.522 -6.663 15.672 hybrid contribution -0.006 0.056 2.081 2.082 sum 11.335 -8.466 -4.582 14.871 Atomic orbital electron populations 1.21948 0.98206 0.99981 0.99745 1.18371 0.91684 0.91408 0.81457 0.95862 1.21651 1.31186 1.13065 0.90166 0.90331 1.25668 0.95337 0.95591 1.01779 1.70024 1.37682 1.24154 1.24150 0.85673 0.78868 0.78734 0.78694 1.22136 1.19431 1.19395 1.57550 1.65244 1.22251 1.38479 1.21404 1.00272 0.80683 1.02259 1.01187 0.73286 0.71938 0.73074 1.93523 1.86628 1.76358 1.42736 1.93538 1.84697 1.34961 1.87307 1.55790 1.30760 1.16098 1.84744 1.20978 0.96035 0.81468 0.97331 1.22151 1.02826 0.96356 0.96923 1.22186 0.96572 0.96647 1.02708 1.21845 0.91903 0.83909 0.97690 1.86446 1.82649 1.30268 1.39837 1.21431 1.02062 0.94972 0.96117 1.21744 0.92836 0.97408 1.03278 0.96544 0.93750 0.91312 0.92977 0.93233 0.90963 0.90187 0.74449 0.89778 0.91359 0.90852 0.91042 0.90648 0.92040 0.75781 0.91321 0.90066 0.89990 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 8.97 71.98 0.65 -5.92 16 2 C 0.28 13.03 2.62 44.24 0.12 13.15 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.26 16 4 C -0.52 -25.01 7.99 25.60 0.20 -24.81 16 5 H 0.08 3.49 5.58 -2.91 -0.02 3.47 16 6 C 0.02 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -50.22 11.32 21.45 0.24 -49.98 16 8 Si 0.95 39.87 29.54 68.60 2.03 41.90 16 9 H -0.30 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 12 N -0.99 -38.91 2.79 -520.45 -1.45 -40.37 16 13 C 0.10 3.25 8.14 127.77 1.04 4.29 16 14 S 2.80 105.92 6.07 -56.49 -0.34 105.58 16 15 O -1.01 -39.73 16.55 -128.00 -2.12 -41.85 16 16 O -1.02 -46.68 16.70 -128.00 -2.14 -48.82 16 17 N -1.11 -32.54 5.53 -169.37 -0.94 -33.47 16 18 C 0.15 3.65 2.81 45.00 0.13 3.78 16 19 C -0.14 -3.57 5.53 30.60 0.17 -3.40 16 20 C -0.14 -2.84 5.55 30.60 0.17 -2.67 16 21 C 0.11 1.90 3.47 30.60 0.11 2.01 16 22 O -0.58 -10.58 13.32 -148.98 -1.98 -12.57 16 23 C -0.11 -1.93 5.58 30.61 0.17 -1.76 16 24 C -0.11 -2.15 5.46 30.61 0.17 -1.98 16 25 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.04 1.93 7.67 -2.39 -0.02 1.91 16 27 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 28 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.00 7.35 -2.38 -0.02 1.98 16 31 H 0.08 2.61 7.02 -2.39 -0.02 2.60 16 32 H 0.42 10.94 8.84 -96.75 -0.85 10.08 16 33 H 0.08 2.13 7.06 -2.39 -0.02 2.11 16 34 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.07 2.17 4.85 -2.39 -0.01 2.15 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.39 4.12 9.08 -74.06 -0.67 3.45 16 40 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.22 344.72 -3.84 -69.06 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.50 Total: 26.60 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 3.36 Total: -16.08 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -2.15 Total: -123.82 kcal Atomic # 8 Polarization: -96.99 SS G_CDS: -6.24 Total: -103.23 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Atomic # 16 Polarization: 105.92 SS G_CDS: -0.34 Total: 105.58 kcal Total: -65.22 -3.84 -69.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337776517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.308 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds