Wall clock time and date at job start Fri Apr 10 2020 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 C 1.50702 * 109.46954 * 239.99951 * 2 1 3 5 5 H 1.08006 * 119.99498 * 274.91080 * 4 2 1 6 6 C 1.37878 * 119.99992 * 94.91132 * 4 2 1 7 7 N 1.31512 * 119.99743 * 184.87568 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 4.87366 * 6 4 2 9 9 H 1.48500 * 109.47162 * 84.81808 * 8 6 4 10 10 H 1.48501 * 109.47100 * 204.81475 * 8 6 4 11 11 H 1.48500 * 109.47420 * 324.81689 * 8 6 4 12 12 N 1.46496 * 109.46878 * 119.99933 * 2 1 3 13 13 C 1.46504 * 120.00389 * 60.00058 * 12 2 1 14 14 S 1.65600 * 119.99755 * 239.99587 * 12 2 1 15 15 O 1.42105 * 106.40192 * 156.46114 * 14 12 2 16 16 O 1.42095 * 106.40516 * 23.54557 * 14 12 2 17 17 N 1.65601 * 107.22076 * 270.00042 * 14 12 2 18 18 C 1.46501 * 119.99836 * 65.00209 * 17 14 12 19 19 C 1.52998 * 109.47075 * 165.00064 * 18 17 14 20 20 H 1.08993 * 109.52305 * 54.87786 * 19 18 17 21 21 C 1.53180 * 109.51849 * 175.00074 * 19 18 17 22 22 C 1.53181 * 109.03233 * 176.88524 * 21 19 18 23 23 C 1.53091 * 109.21526 * 302.98518 * 22 21 19 24 24 O 1.43035 * 109.34183 * 57.58083 * 23 22 21 25 25 C 1.42897 * 114.13112 * 298.87910 * 24 23 22 26 26 H 1.08997 * 109.46981 * 54.97493 * 1 2 3 27 27 H 1.09001 * 109.47493 * 174.97681 * 1 2 3 28 28 H 1.09000 * 109.47273 * 294.97860 * 1 2 3 29 29 H 0.97000 * 120.00445 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46820 * 269.99983 * 13 12 2 31 31 H 1.09004 * 109.46589 * 29.99549 * 13 12 2 32 32 H 1.08996 * 109.47200 * 149.99353 * 13 12 2 33 33 H 0.96999 * 120.00065 * 244.99864 * 17 14 12 34 34 H 1.09000 * 109.46995 * 44.99690 * 18 17 14 35 35 H 1.09004 * 109.46984 * 285.00355 * 18 17 14 36 36 H 1.08994 * 109.54565 * 57.01831 * 21 19 18 37 37 H 1.09004 * 109.54224 * 296.74923 * 21 19 18 38 38 H 1.09005 * 109.52263 * 62.92972 * 22 21 19 39 39 H 1.09000 * 109.52199 * 183.04715 * 22 21 19 40 40 H 1.09003 * 109.47698 * 177.62299 * 23 22 21 41 41 H 1.08992 * 109.47963 * 297.66023 * 23 22 21 42 42 H 1.08997 * 109.48085 * 301.17684 * 25 24 23 43 43 H 1.09010 * 109.49175 * 181.14755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1368 -1.7854 -1.2285 6 6 2.3585 0.0119 -2.3587 7 7 2.7049 -0.6135 -3.4625 8 14 2.3083 1.8787 -2.3194 9 1 3.5930 2.3973 -1.7846 10 1 2.0995 2.3974 -3.6951 11 1 1.1927 2.3258 -1.4472 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2862 15 8 2.8228 -0.5645 3.5259 16 8 2.6904 1.4973 2.1192 17 7 4.5438 -0.1042 1.8180 18 6 5.0140 0.4529 0.5473 19 6 6.5437 0.4448 0.5218 20 1 6.9059 -0.5647 0.7156 21 6 7.0352 0.9100 -0.8524 22 6 8.5657 0.9724 -0.8408 23 6 9.0234 1.9040 0.2844 24 8 8.5054 1.4313 1.5311 25 6 7.0783 1.3965 1.5952 26 1 -0.3633 0.5898 -0.8415 27 1 -0.3634 -1.0237 -0.0900 28 1 -0.3634 0.4340 0.9315 29 1 2.9340 -0.1055 -4.2564 30 1 0.7375 -2.1443 1.9994 31 1 1.5294 -2.5968 0.4708 32 1 2.4629 -2.5819 1.9864 33 1 5.1540 -0.6011 2.3851 34 1 4.6542 1.4767 0.4442 35 1 4.6336 -0.1505 -0.2770 36 1 6.6316 1.8991 -1.0684 37 1 6.7047 0.2053 -1.6156 38 1 8.9697 -0.0262 -0.6741 39 1 8.9219 1.3542 -1.7975 40 1 10.1126 1.9187 0.3237 41 1 8.6527 2.9114 0.0956 42 1 6.6822 2.3974 1.4236 43 1 6.7669 1.0461 2.5793 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337779126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:59 Heat of formation + Delta-G solvation = -136.066535 kcal Electronic energy + Delta-G solvation = -25467.052140 eV Core-core repulsion = 21866.643218 eV Total energy + Delta-G solvation = -3600.408921 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.45106 -36.81582 -36.32072 -35.68054 -35.32726 -33.17536 -32.56135 -30.83227 -29.96216 -25.78745 -25.57230 -25.22921 -24.99315 -22.03927 -20.69881 -20.23026 -18.75770 -17.51229 -17.11632 -16.62715 -16.24549 -16.09120 -15.80283 -14.91732 -14.85884 -14.42745 -14.23303 -13.78901 -13.44913 -13.12858 -12.95264 -12.62446 -12.61843 -12.57415 -12.24568 -11.95282 -11.82054 -11.72519 -11.57187 -11.46297 -11.25052 -11.18429 -10.98311 -10.84724 -10.75946 -10.54231 -10.38030 -10.30603 -9.89881 -9.54816 -9.45149 -9.02411 -8.73351 -8.09393 -6.29101 -4.29791 1.18350 3.13832 3.24946 3.32697 3.43931 3.82716 4.07364 4.23080 4.73075 4.77492 4.84291 4.91149 4.96276 5.05879 5.17066 5.31028 5.45309 5.55311 5.61481 5.69942 5.71622 5.77550 5.84879 5.99695 6.06901 6.13398 6.19259 6.21486 6.34210 6.36501 6.41825 6.46427 6.56588 6.66133 6.92217 7.14485 7.16210 7.25272 7.41905 7.63879 8.32857 8.76604 9.32085 10.82307 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.012848 B = 0.006923 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.720974 B = 4043.348300 C = 5442.581708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.231 3.769 3 H 0.056 0.944 4 C -0.519 4.519 5 H 0.083 0.917 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.852 3.148 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.987 5.987 13 C 0.107 3.893 14 S 2.777 3.223 15 O -0.998 6.998 16 O -0.987 6.987 17 N -1.129 6.129 18 C 0.120 3.880 19 C -0.124 4.124 20 H 0.086 0.914 21 C -0.120 4.120 22 C -0.153 4.153 23 C 0.058 3.942 24 O -0.385 6.385 25 C 0.064 3.936 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.267 0.733 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.409 0.591 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.293 1.794 5.610 10.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.128 3.872 3 H 0.073 0.927 4 C -0.558 4.558 5 H 0.101 0.899 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.678 3.322 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.829 5.829 13 C -0.039 4.039 14 S 2.787 3.213 15 O -0.982 6.982 16 O -0.971 6.971 17 N -0.888 5.888 18 C -0.006 4.006 19 C -0.144 4.144 20 H 0.104 0.896 21 C -0.159 4.159 22 C -0.191 4.191 23 C -0.018 4.018 24 O -0.304 6.304 25 C -0.013 4.013 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.241 0.759 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.033 2.383 6.217 10.433 hybrid contribution 0.199 0.591 -0.610 0.872 sum 8.232 2.974 5.607 10.395 Atomic orbital electron populations 1.22161 0.97937 1.01132 0.99122 1.19124 0.91933 0.92882 0.83299 0.92652 1.21193 1.43966 0.96070 0.94614 0.89859 1.24941 0.94219 0.97848 0.95321 1.69880 1.44886 1.35875 1.01596 0.87248 0.80246 0.86840 0.77832 1.19295 1.21006 1.18333 1.57873 1.64627 1.21491 1.38885 1.21194 0.99066 0.81721 1.01940 1.01980 0.72801 0.73725 0.72841 1.93553 1.85937 1.76014 1.42670 1.93559 1.84084 1.32744 1.86695 1.55965 1.30493 1.70855 1.31516 1.21387 0.93516 0.99718 0.85980 1.21954 0.95175 1.01041 0.96235 0.89567 1.21614 0.94874 1.02611 0.96758 1.22173 0.96576 1.01141 0.99224 1.22608 0.98834 0.96320 0.84066 1.87925 1.20853 1.86864 1.34758 1.22695 0.80402 0.98685 0.99534 0.92752 0.92831 0.95355 0.92315 0.93915 0.90093 0.92848 0.75883 0.90955 0.88736 0.91503 0.90224 0.91016 0.90849 0.89162 0.93284 0.92895 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.10 37.16 0.34 -2.60 16 2 C 0.23 5.11 2.28 -69.08 -0.16 4.95 16 3 H 0.06 1.30 4.07 -51.93 -0.21 1.09 16 4 C -0.52 -12.69 8.40 -34.44 -0.29 -12.98 16 5 H 0.08 2.19 6.82 -52.48 -0.36 1.83 16 6 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -24.13 13.96 55.43 0.77 -23.36 16 8 Si 0.85 19.68 26.99 -169.99 -4.59 15.09 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.26 -5.95 6.82 56.52 0.39 -5.56 16 12 N -0.99 -19.33 3.12 -115.85 -0.36 -19.69 16 13 C 0.11 1.82 9.44 59.85 0.57 2.38 16 14 S 2.78 52.69 6.09 -107.50 -0.66 52.03 16 15 O -1.00 -19.88 17.21 -57.17 -0.98 -20.86 16 16 O -0.99 -21.48 16.17 -57.17 -0.92 -22.40 16 17 N -1.13 -17.73 5.63 -10.61 -0.06 -17.79 16 18 C 0.12 1.97 5.64 -4.04 -0.02 1.95 16 19 C -0.12 -1.69 2.41 -90.48 -0.22 -1.91 16 20 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.12 -1.59 5.31 -26.54 -0.14 -1.73 16 22 C -0.15 -1.67 6.13 -26.59 -0.16 -1.84 16 23 C 0.06 0.64 6.86 37.20 0.26 0.89 16 24 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 25 C 0.06 0.84 5.99 37.20 0.22 1.06 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.41 6.56 -51.93 -0.34 1.07 16 32 H 0.05 0.81 7.79 -51.93 -0.40 0.40 16 33 H 0.41 5.28 8.40 -34.47 -0.29 4.99 16 34 H 0.07 1.28 7.75 -51.93 -0.40 0.88 16 35 H 0.09 1.75 7.82 -51.93 -0.41 1.35 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.16 7.64 -51.92 -0.40 0.77 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -29.81 350.56 -8.62 -38.43 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.02 Total: 6.61 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 0.29 Total: -7.84 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.35 Total: -60.84 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -2.29 Total: -48.77 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.59 Total: 15.09 kcal Atomic # 16 Polarization: 52.69 SS G_CDS: -0.66 Total: 52.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.81 -8.62 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337779126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.632 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds