Wall clock time and date at job start Fri Apr 10 2020 17:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47587 * 2 1 4 4 C 1.50692 * 110.53747 * 182.87099 * 3 2 1 5 5 C 1.39870 * 126.04250 * 332.14960 * 4 3 2 6 6 N 1.30836 * 108.20764 * 179.97438 * 5 4 3 7 7 N 1.40090 * 108.20203 * 0.02562 * 6 5 4 8 8 C 1.46498 * 126.03897 * 179.97438 * 7 6 5 9 9 C 1.34945 * 107.92718 * 359.75986 * 7 6 5 10 10 N 1.47311 * 110.59736 * 305.70307 * 3 2 1 11 11 C 1.34526 * 106.61922 * 118.52201 * 10 3 2 12 12 O 1.21541 * 123.76606 * 179.97438 * 11 10 3 13 13 N 1.33788 * 112.45748 * 0.02562 * 11 10 3 14 14 C 1.46505 * 124.17508 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 90.02295 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.34757 * 111.64640 * 0.22471 * 13 11 10 25 25 O 1.21235 * 127.15948 * 179.73402 * 24 13 11 26 26 H 1.09000 * 109.47372 * 60.00032 * 1 2 3 27 27 H 1.09003 * 109.47562 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47285 * 300.00292 * 1 2 3 29 29 H 1.09003 * 109.47285 * 239.99708 * 2 1 3 30 30 H 1.09006 * 109.47201 * 120.00383 * 2 1 3 31 31 H 1.08006 * 125.89692 * 359.96296 * 5 4 3 32 32 H 1.08998 * 109.47048 * 90.02782 * 8 7 6 33 33 H 1.08997 * 109.47707 * 210.02819 * 8 7 6 34 34 H 1.09010 * 109.47038 * 330.03190 * 8 7 6 35 35 H 1.07999 * 126.13131 * 180.23750 * 9 7 6 36 36 H 0.96999 * 126.69356 * 298.55898 * 10 3 2 37 37 H 1.09002 * 109.47068 * 210.02355 * 14 13 11 38 38 H 1.09001 * 109.47372 * 330.02443 * 14 13 11 39 39 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 40 40 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 41 41 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5450 1.4710 -0.0707 5 6 4.4100 0.4781 0.4008 6 7 5.6386 0.8587 0.1612 7 7 5.5943 2.1081 -0.4709 8 6 6.7503 2.8924 -0.9120 9 6 4.2984 2.4595 -0.6060 10 7 1.4541 2.1993 -1.1198 11 6 0.7452 3.2048 -0.5754 12 8 0.1292 4.0263 -1.2256 13 7 0.7951 3.1999 0.7615 14 6 0.1164 4.1792 1.6139 15 6 -1.2880 3.6750 1.9516 16 6 -1.9860 4.6820 2.8290 17 1 -1.4787 5.5911 3.1166 18 6 -3.2725 4.4434 3.2636 19 7 -3.8904 3.3367 2.9130 20 14 -4.1374 5.6914 4.3517 21 1 -4.2354 6.9887 3.6356 22 1 -5.5009 5.2026 4.6784 23 1 -3.3634 5.8755 5.6056 24 6 1.5511 2.1861 1.2271 25 8 1.7892 1.9226 2.3862 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.1147 -0.4436 0.8802 32 1 7.0025 2.6227 -1.9375 33 1 6.5086 3.9542 -0.8646 34 1 7.6003 2.6839 -0.2620 35 1 3.9287 3.3678 -1.0584 36 1 1.5586 2.0095 -2.0652 37 1 0.6846 4.3156 2.5341 38 1 0.0439 5.1309 1.0874 39 1 -1.8562 3.5387 1.0314 40 1 -1.2156 2.7233 2.4782 41 1 -4.7956 3.1689 3.2185 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129961862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:10 Heat of formation + Delta-G solvation = 8.660010 kcal Electronic energy + Delta-G solvation = -25878.296307 eV Core-core repulsion = 22181.012000 eV Total energy + Delta-G solvation = -3697.284308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.75364 -42.06626 -39.64383 -37.81818 -36.86738 -35.22076 -34.18769 -33.37242 -31.83658 -31.40644 -28.71851 -27.45920 -26.42731 -24.54192 -23.98386 -22.90527 -21.84555 -21.55045 -20.87982 -19.04688 -18.68315 -18.39926 -17.53123 -16.99032 -16.72107 -16.51268 -16.33988 -16.25172 -15.52548 -15.27841 -15.15405 -15.05983 -14.88752 -14.59889 -14.32970 -13.82157 -13.59890 -13.58475 -13.44055 -12.85532 -12.80127 -12.73182 -12.51847 -12.31355 -12.09909 -12.05238 -11.95519 -11.77493 -11.41844 -11.18342 -10.72721 -10.59713 -10.48363 -10.41245 -9.54294 -8.23723 -6.36780 0.58795 0.78145 1.21443 1.41060 1.45057 1.52626 1.57408 1.69951 2.04473 2.17090 2.40997 3.10210 3.10910 3.25415 3.70202 3.89029 3.91095 4.04009 4.24122 4.30931 4.40670 4.42517 4.44143 4.50642 4.57472 4.68583 4.70192 4.73018 4.73587 4.90710 4.99005 5.09625 5.30086 5.37100 5.44651 5.52560 5.72976 5.85165 5.96273 6.09272 6.15168 6.43638 6.61101 6.76851 7.15618 7.32738 8.88763 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.003741 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.962698 B = 7482.110288 C = 7716.274176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.105 4.105 3 C 0.225 3.775 4 C -0.259 4.259 5 C 0.076 3.924 6 N -0.320 5.320 7 N -0.373 5.373 8 C 0.090 3.910 9 C 0.088 3.912 10 N -0.694 5.694 11 C 0.702 3.298 12 O -0.578 6.578 13 N -0.579 5.579 14 C 0.133 3.867 15 C 0.028 3.972 16 C -0.547 4.547 17 H 0.070 0.930 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.282 1.282 23 H -0.264 1.264 24 C 0.525 3.475 25 O -0.495 6.495 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.015 0.985 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.207 0.793 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.190 0.810 36 H 0.452 0.548 37 H 0.086 0.914 38 H 0.087 0.913 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.722 -5.896 -11.257 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.143 4.143 3 C 0.133 3.867 4 C -0.272 4.272 5 C -0.110 4.110 6 N -0.141 5.141 7 N -0.153 5.153 8 C -0.049 4.049 9 C -0.062 4.062 10 N -0.359 5.359 11 C 0.403 3.597 12 O -0.455 6.455 13 N -0.323 5.323 14 C 0.012 3.988 15 C -0.010 4.010 16 C -0.585 4.585 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.796 3.204 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.189 1.189 24 C 0.313 3.687 25 O -0.366 6.366 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.034 0.966 29 H 0.142 0.858 30 H 0.116 0.884 31 H 0.223 0.777 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.207 0.793 36 H 0.299 0.701 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.751 -5.824 -10.836 24.989 hybrid contribution -1.847 0.769 0.273 2.020 sum 19.903 -5.055 -10.564 23.093 Atomic orbital electron populations 1.21836 0.95980 1.03298 1.00602 1.21807 0.95337 0.90640 1.06535 1.19358 0.90252 0.94557 0.82557 1.19438 0.92226 0.99702 1.15874 1.24081 0.88737 1.00188 0.98011 1.77386 1.22022 0.96788 1.17925 1.48825 1.06273 1.15332 1.44852 1.22265 0.85532 0.95178 1.01940 1.22533 0.84281 0.99932 0.99420 1.45442 1.52168 1.28727 1.09609 1.15978 0.79763 0.82512 0.81414 1.90974 1.47507 1.42609 1.64378 1.46694 1.47091 1.30255 1.08304 1.21729 0.93716 0.90335 0.93015 1.19132 0.90945 0.95808 0.95104 1.21441 0.99951 1.05741 1.31386 0.91187 1.26019 0.98207 0.97670 0.97736 1.70111 1.13525 1.26913 1.46440 0.85393 0.77268 0.78767 0.78986 1.18913 1.20751 1.18885 1.21461 0.76397 0.79958 0.90897 1.90727 1.57709 1.68186 1.19991 0.92553 0.89482 0.96571 0.85811 0.88398 0.77672 0.88711 0.87378 0.88727 0.79349 0.70068 0.89572 0.89443 0.99145 0.99189 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.38 71.98 0.68 -3.42 16 2 C -0.11 -2.03 4.78 30.59 0.15 -1.89 16 3 C 0.22 5.34 1.05 2.24 0.00 5.35 16 4 C -0.26 -5.35 5.02 -20.14 -0.10 -5.45 16 5 C 0.08 1.51 11.19 85.24 0.95 2.47 16 6 N -0.32 -6.90 12.58 -57.02 -0.72 -7.62 16 7 N -0.37 -6.47 4.01 -369.56 -1.48 -7.95 16 8 C 0.09 0.76 11.47 127.77 1.47 2.23 16 9 C 0.09 1.58 10.96 83.54 0.92 2.50 16 10 N -0.69 -16.15 4.61 -443.26 -2.04 -18.20 16 11 C 0.70 24.46 8.52 179.44 1.53 25.99 16 12 O -0.58 -24.38 17.48 -3.84 -0.07 -24.45 16 13 N -0.58 -22.27 2.60 -773.12 -2.01 -24.28 16 14 C 0.13 5.96 5.64 86.38 0.49 6.45 16 15 C 0.03 1.56 5.30 29.85 0.16 1.72 16 16 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 17 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 18 C 0.00 0.13 5.46 84.65 0.46 0.59 16 19 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 20 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.52 18.38 5.80 87.94 0.51 18.89 16 25 O -0.50 -20.30 17.75 -2.89 -0.05 -20.35 16 26 H 0.06 1.47 7.52 -2.39 -0.02 1.45 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.02 0.54 7.29 -2.39 -0.02 0.52 16 29 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.78 7.54 -2.38 -0.02 1.76 16 31 H 0.21 3.04 7.49 -2.91 -0.02 3.01 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.48 16 34 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.45 7.36 8.96 -92.71 -0.83 6.53 16 37 H 0.09 3.75 8.00 -2.39 -0.02 3.73 16 38 H 0.09 3.83 7.86 -2.39 -0.02 3.81 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -81.69 352.62 3.60 -78.09 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.22 Total: 11.77 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 7.44 Total: 23.72 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -5.97 Total: -115.77 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -0.12 Total: -44.80 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -81.69 3.60 -78.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129961862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.749 kcal (2) G-P(sol) polarization free energy of solvation -81.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds