Wall clock time and date at job start Fri Apr 10 2020 17:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 H 1.09007 * 109.47034 * 55.00546 * 3 2 1 5 5 C 1.50706 * 109.46986 * 174.99806 * 3 2 1 6 6 H 1.07992 * 119.99509 * 119.99970 * 5 3 2 7 7 C 1.37879 * 120.00113 * 300.00798 * 5 3 2 8 8 N 1.31518 * 120.00023 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99814 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46720 * 119.99995 * 9 7 5 12 12 H 1.48496 * 109.47154 * 239.99676 * 9 7 5 13 13 N 1.46497 * 109.47746 * 295.00337 * 3 2 1 14 14 C 1.34777 * 120.00268 * 84.99489 * 13 3 2 15 15 O 1.21283 * 119.99765 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00048 * 180.02562 * 14 13 3 17 17 H 1.09002 * 110.85744 * 59.30446 * 16 14 13 18 18 C 1.54629 * 111.00132 * 295.48870 * 16 14 13 19 19 C 1.51279 * 104.19679 * 217.06972 * 18 16 14 20 20 O 1.21310 * 124.94309 * 196.21932 * 19 18 16 21 21 N 1.34420 * 110.11334 * 16.25416 * 19 18 16 22 22 C 1.40764 * 124.34740 * 180.38657 * 21 19 18 23 23 C 1.40254 * 126.07939 * 179.71420 * 22 21 19 24 24 N 1.30838 * 108.33322 * 179.81423 * 23 22 21 25 25 N 1.40065 * 108.36669 * 0.44674 * 24 23 22 26 26 H 0.97001 * 126.04745 * 179.74079 * 25 24 23 27 27 C 1.35756 * 126.08162 * 0.02562 * 22 21 19 28 28 C 1.46758 * 111.30351 * 0.40485 * 21 19 18 29 29 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46854 * 299.99998 * 1 2 3 31 31 H 1.08997 * 109.47029 * 59.99348 * 1 2 3 32 32 H 1.09002 * 109.46973 * 240.00528 * 2 1 3 33 33 H 1.08992 * 109.47248 * 119.99940 * 2 1 3 34 34 H 0.96992 * 120.00127 * 180.02562 * 8 7 5 35 35 H 0.96995 * 119.99650 * 265.00500 * 13 3 2 36 36 H 1.09000 * 110.49023 * 335.75107 * 18 16 14 37 37 H 1.09002 * 110.48233 * 98.39242 * 18 16 14 38 38 H 1.08002 * 125.83330 * 359.97438 * 23 22 21 39 39 H 1.07996 * 126.21920 * 359.96585 * 27 22 21 40 40 H 1.09001 * 110.25014 * 223.98099 * 28 21 19 41 41 H 1.08999 * 110.31832 * 102.02010 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.5987 1.5455 0.1937 11 1 6.3999 1.6157 2.6093 12 1 6.4963 -0.5189 1.4625 13 7 1.6524 2.0977 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3394 2.6326 -0.4340 16 6 0.0362 3.3379 -2.6546 17 1 0.0714 2.6351 -3.4871 18 6 0.9258 4.5714 -2.9337 19 6 -0.0201 5.5800 -3.5473 20 8 0.3213 6.5687 -4.1617 21 7 -1.2941 5.2215 -3.3121 22 6 -2.4175 5.9441 -3.7563 23 6 -3.7597 5.6014 -3.5370 24 7 -4.5138 6.5130 -4.0956 25 7 -3.6820 7.4642 -4.6999 26 1 -3.9740 8.2489 -5.1897 27 6 -2.3944 7.0936 -4.4781 28 6 -1.3634 3.9802 -2.5322 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8292 -0.0606 2.9501 35 1 2.2718 2.1233 -1.9976 36 1 1.3449 4.9577 -2.0045 37 1 1.7205 4.3177 -3.6352 38 1 -4.1108 4.7345 -2.9968 39 1 -1.5124 7.6184 -4.8144 40 1 -2.1211 3.3156 -2.9474 41 1 -1.5871 4.2009 -1.4885 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183943441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:16 Heat of formation + Delta-G solvation = 5.029408 kcal Electronic energy + Delta-G solvation = -25064.520523 eV Core-core repulsion = 21367.078780 eV Total energy + Delta-G solvation = -3697.441742 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68673 -40.41993 -38.90539 -36.46709 -35.10792 -33.30773 -32.34098 -31.51823 -30.89125 -28.78659 -27.84778 -27.00377 -23.89216 -22.97213 -22.62036 -21.36219 -20.08518 -19.52788 -19.36467 -18.29553 -17.57043 -16.73500 -16.13847 -15.56272 -15.37108 -15.14355 -14.80858 -14.66086 -14.57012 -14.21982 -13.86520 -13.63044 -13.26612 -12.91890 -12.90455 -12.69175 -12.14981 -11.64204 -11.47376 -11.42402 -11.30240 -11.21834 -11.00158 -10.88895 -10.48130 -10.37042 -10.24561 -10.04491 -9.89816 -9.69617 -9.15189 -9.08608 -8.56083 -7.94582 -7.87828 -6.17847 -4.27455 1.56454 2.08735 2.36640 2.91528 2.96481 3.15874 3.20622 3.29236 3.31157 3.79234 4.17571 4.27786 4.34879 4.66605 4.71935 4.86180 4.94001 5.14095 5.28048 5.30878 5.39252 5.47840 5.55527 5.70032 5.86969 5.91424 6.33303 6.38699 6.58899 6.61282 6.85002 6.96746 6.98901 7.12270 7.27939 7.34523 7.36043 7.55104 7.65541 7.82861 7.97749 8.11813 8.54257 8.69956 8.99011 9.40125 10.87426 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.003102 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.838734 B = 9025.491027 C = 9819.133495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.512 3.488 15 O -0.542 6.542 16 C -0.125 4.125 17 H 0.114 0.886 18 C -0.140 4.140 19 C 0.519 3.481 20 O -0.528 6.528 21 N -0.535 5.535 22 C 0.012 3.988 23 C 0.044 3.956 24 N -0.280 5.280 25 N -0.475 5.475 26 H 0.444 0.556 27 C 0.039 3.961 28 C 0.118 3.882 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.264 0.736 35 H 0.390 0.610 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.189 0.811 39 H 0.191 0.809 40 H 0.088 0.912 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 7.858 -12.773 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.296 3.704 15 O -0.421 6.421 16 C -0.147 4.147 17 H 0.132 0.868 18 C -0.180 4.180 19 C 0.308 3.692 20 O -0.405 6.405 21 N -0.261 5.261 22 C -0.091 4.091 23 C -0.145 4.145 24 N -0.103 5.103 25 N -0.187 5.187 26 H 0.289 0.711 27 C -0.109 4.109 28 C -0.005 4.005 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.222 0.778 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.206 0.794 39 H 0.208 0.792 40 H 0.106 0.894 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.943 8.606 -12.426 18.660 hybrid contribution 2.037 -0.070 -0.283 2.058 sum -8.906 8.535 -12.709 17.711 Atomic orbital electron populations 1.21840 0.98315 0.98129 1.01171 1.21944 0.92632 0.99765 1.02385 1.18833 0.94309 0.89209 0.80814 0.93164 1.21255 0.90652 1.39087 1.06339 0.91968 1.24881 0.98603 0.94762 0.95393 1.69894 1.35083 1.37570 1.09324 0.86415 0.84863 0.77793 0.78168 1.19702 1.20897 1.20887 1.46483 1.14281 1.55352 1.18727 1.19740 0.83180 0.79540 0.87975 1.90698 1.51386 1.59935 1.40058 1.22312 0.95257 0.97544 0.99629 0.86758 1.22300 0.97965 0.93580 1.04155 1.20950 0.82905 0.86195 0.79130 1.90654 1.79918 1.28283 1.41640 1.45258 1.03834 1.24943 1.52054 1.17613 0.87072 0.96599 1.07768 1.23739 0.89559 0.99865 1.01331 1.77269 1.17875 1.00663 1.14460 1.46135 1.03615 1.23297 1.45699 0.71123 1.22534 0.89149 0.97458 1.01780 1.22107 0.97022 0.83601 0.97734 0.95823 0.93106 0.94315 0.94976 0.88264 0.92571 0.77769 0.86592 0.86811 0.79411 0.79183 0.89379 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.52 37.16 0.32 -2.49 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.04 16 3 C 0.27 6.21 2.24 -69.08 -0.15 6.06 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 5 C -0.53 -13.23 8.73 -34.44 -0.30 -13.53 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -23.70 11.29 55.43 0.63 -23.07 16 9 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.70 -12.51 5.01 -54.93 -0.28 -12.78 16 14 C 0.51 8.34 5.63 -10.99 -0.06 8.28 16 15 O -0.54 -10.71 12.67 5.56 0.07 -10.64 16 16 C -0.13 -1.43 3.54 -90.14 -0.32 -1.75 16 17 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.14 -1.56 6.40 -26.74 -0.17 -1.73 16 19 C 0.52 6.76 7.98 -10.86 -0.09 6.68 16 20 O -0.53 -8.09 15.64 5.53 0.09 -8.00 16 21 N -0.53 -6.40 3.16 -112.48 -0.36 -6.76 16 22 C 0.01 0.14 6.80 -83.88 -0.57 -0.43 16 23 C 0.04 0.47 11.53 -17.22 -0.20 0.27 16 24 N -0.28 -3.16 12.69 30.71 0.39 -2.77 16 25 N -0.48 -4.41 7.40 30.69 0.23 -4.18 16 26 H 0.44 2.54 8.96 -182.62 -1.64 0.90 16 27 C 0.04 0.42 11.18 -16.68 -0.19 0.24 16 28 C 0.12 1.31 6.27 -3.13 -0.02 1.29 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 31 H 0.04 0.74 5.64 -51.93 -0.29 0.45 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.39 5.95 8.54 -40.82 -0.35 5.60 16 36 H 0.12 1.40 7.89 -51.93 -0.41 0.99 16 37 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.19 2.02 6.51 -52.49 -0.34 1.68 16 40 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 41 H 0.10 1.29 7.00 -51.93 -0.36 0.93 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -31.31 338.99 -7.72 -39.03 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.58 Total: 7.77 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.99 Total: 1.47 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.61 Total: -49.57 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.16 Total: -18.64 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.31 -7.72 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183943441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.060 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds