Wall clock time and date at job start Fri Apr 10 2020 17:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 H 1.09007 * 109.47034 * 55.00546 * 3 2 1 5 5 C 1.50706 * 109.46986 * 174.99806 * 3 2 1 6 6 H 1.07992 * 119.99509 * 119.99970 * 5 3 2 7 7 C 1.37879 * 120.00113 * 300.00798 * 5 3 2 8 8 N 1.31518 * 120.00023 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99814 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46720 * 119.99995 * 9 7 5 12 12 H 1.48496 * 109.47154 * 239.99676 * 9 7 5 13 13 N 1.46497 * 109.47746 * 295.00337 * 3 2 1 14 14 C 1.34777 * 120.00268 * 84.99489 * 13 3 2 15 15 O 1.21283 * 119.99765 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00048 * 180.02562 * 14 13 3 17 17 H 1.09002 * 110.85744 * 59.30446 * 16 14 13 18 18 C 1.54629 * 111.00132 * 295.48870 * 16 14 13 19 19 C 1.51279 * 104.19679 * 217.06972 * 18 16 14 20 20 O 1.21310 * 124.94309 * 196.21932 * 19 18 16 21 21 N 1.34420 * 110.11334 * 16.25416 * 19 18 16 22 22 C 1.40764 * 124.34740 * 180.38657 * 21 19 18 23 23 C 1.40254 * 126.07939 * 179.71420 * 22 21 19 24 24 N 1.30838 * 108.33322 * 179.81423 * 23 22 21 25 25 N 1.40065 * 108.36669 * 0.44674 * 24 23 22 26 26 H 0.97001 * 126.04745 * 179.74079 * 25 24 23 27 27 C 1.35756 * 126.08162 * 0.02562 * 22 21 19 28 28 C 1.46758 * 111.30351 * 0.40485 * 21 19 18 29 29 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46854 * 299.99998 * 1 2 3 31 31 H 1.08997 * 109.47029 * 59.99348 * 1 2 3 32 32 H 1.09002 * 109.46973 * 240.00528 * 2 1 3 33 33 H 1.08992 * 109.47248 * 119.99940 * 2 1 3 34 34 H 0.96992 * 120.00127 * 180.02562 * 8 7 5 35 35 H 0.96995 * 119.99650 * 265.00500 * 13 3 2 36 36 H 1.09000 * 110.49023 * 335.75107 * 18 16 14 37 37 H 1.09002 * 110.48233 * 98.39242 * 18 16 14 38 38 H 1.08002 * 125.83330 * 359.97438 * 23 22 21 39 39 H 1.07996 * 126.21920 * 359.96585 * 27 22 21 40 40 H 1.09001 * 110.25014 * 223.98099 * 28 21 19 41 41 H 1.08999 * 110.31832 * 102.02010 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.5987 1.5455 0.1937 11 1 6.3999 1.6157 2.6093 12 1 6.4963 -0.5189 1.4625 13 7 1.6524 2.0977 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3394 2.6326 -0.4340 16 6 0.0362 3.3379 -2.6546 17 1 0.0714 2.6351 -3.4871 18 6 0.9258 4.5714 -2.9337 19 6 -0.0201 5.5800 -3.5473 20 8 0.3213 6.5687 -4.1617 21 7 -1.2941 5.2215 -3.3121 22 6 -2.4175 5.9441 -3.7563 23 6 -3.7597 5.6014 -3.5370 24 7 -4.5138 6.5130 -4.0956 25 7 -3.6820 7.4642 -4.6999 26 1 -3.9740 8.2489 -5.1897 27 6 -2.3944 7.0936 -4.4781 28 6 -1.3634 3.9802 -2.5322 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8292 -0.0606 2.9501 35 1 2.2718 2.1233 -1.9976 36 1 1.3449 4.9577 -2.0045 37 1 1.7205 4.3177 -3.6352 38 1 -4.1108 4.7345 -2.9968 39 1 -1.5124 7.6184 -4.8144 40 1 -2.1211 3.3156 -2.9474 41 1 -1.5871 4.2009 -1.4885 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183943441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:16 Heat of formation + Delta-G solvation = -17.092028 kcal Electronic energy + Delta-G solvation = -25065.479780 eV Core-core repulsion = 21367.078780 eV Total energy + Delta-G solvation = -3698.401000 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.56495 -41.43605 -40.21303 -37.59349 -36.72499 -34.47053 -33.96810 -32.55902 -32.28653 -29.78630 -28.87551 -28.65088 -25.35261 -24.24971 -23.68161 -22.28678 -21.61444 -20.89026 -20.39466 -19.22542 -18.91533 -17.90778 -17.42946 -17.13771 -16.56360 -16.35783 -16.03719 -15.80143 -15.53905 -15.45245 -14.95647 -14.80033 -14.53773 -14.21714 -14.16253 -13.80233 -13.60844 -13.31736 -13.10306 -12.83471 -12.67814 -12.49747 -12.37147 -12.09496 -12.06093 -11.96388 -11.49972 -11.38064 -11.09771 -10.96531 -10.71016 -10.57523 -10.43061 -9.54749 -8.77277 -8.11672 -6.27487 0.72375 1.17209 1.46252 1.49064 1.54544 1.59211 1.85553 2.01708 2.14806 2.39492 2.63014 3.18441 3.21788 3.35360 3.80031 3.90276 3.93936 4.00449 4.31766 4.45870 4.47145 4.58629 4.59443 4.67528 4.69214 4.81940 4.86685 4.97541 5.08676 5.16231 5.36593 5.52520 5.64473 5.69674 5.73721 5.88574 5.94016 5.99504 6.25120 6.28439 6.57750 6.82255 7.00367 7.05999 7.39879 7.64794 8.93404 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.003102 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.838734 B = 9025.491027 C = 9819.133495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.543 4.543 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.288 1.288 12 H -0.282 1.282 13 N -0.699 5.699 14 C 0.513 3.487 15 O -0.578 6.578 16 C -0.107 4.107 17 H 0.151 0.849 18 C -0.133 4.133 19 C 0.514 3.486 20 O -0.556 6.556 21 N -0.530 5.530 22 C -0.014 4.014 23 C 0.044 3.956 24 N -0.299 5.299 25 N -0.462 5.462 26 H 0.458 0.542 27 C 0.043 3.957 28 C 0.119 3.881 29 H 0.042 0.958 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.209 0.791 39 H 0.192 0.808 40 H 0.114 0.886 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 7.855 -14.919 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.581 4.581 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.183 1.183 11 H -0.214 1.214 12 H -0.208 1.208 13 N -0.348 5.348 14 C 0.299 3.701 15 O -0.459 6.459 16 C -0.129 4.129 17 H 0.169 0.831 18 C -0.173 4.173 19 C 0.304 3.696 20 O -0.435 6.435 21 N -0.255 5.255 22 C -0.116 4.116 23 C -0.144 4.144 24 N -0.122 5.122 25 N -0.176 5.176 26 H 0.306 0.694 27 C -0.107 4.107 28 C -0.003 4.003 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.123 0.877 37 H 0.158 0.842 38 H 0.226 0.774 39 H 0.209 0.791 40 H 0.132 0.868 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.848 8.627 -14.620 20.146 hybrid contribution 1.925 0.003 0.394 1.965 sum -8.923 8.630 -14.226 18.881 Atomic orbital electron populations 1.21684 0.96693 0.99130 1.00588 1.21791 0.94009 0.99177 1.01215 1.18346 0.93344 0.89211 0.81582 0.98113 1.21643 0.91739 1.38323 1.06399 0.90872 1.25696 1.02729 0.94680 0.95301 1.70047 1.36749 1.38659 1.09886 0.85429 0.79940 0.77629 0.78125 1.18344 1.21447 1.20785 1.46194 1.15462 1.55574 1.17548 1.20448 0.81950 0.78533 0.89165 1.90697 1.52288 1.60962 1.41930 1.22200 0.95285 0.97857 0.97527 0.83092 1.22300 0.98183 0.92719 1.04146 1.21204 0.83410 0.86119 0.78903 1.90638 1.80374 1.29438 1.43050 1.45259 1.03697 1.24996 1.51555 1.17879 0.87468 0.97370 1.08930 1.24067 0.89036 1.00279 1.00975 1.77242 1.18532 1.01284 1.15144 1.46178 1.02943 1.23399 1.45108 0.69426 1.22612 0.89645 0.97193 1.01234 1.22116 0.97521 0.83726 0.96913 0.93943 0.95583 0.92911 0.93928 0.91490 0.92801 0.75913 0.87699 0.84244 0.77438 0.79093 0.86781 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 8.52 71.98 0.61 -4.39 16 2 C -0.12 -5.57 5.45 30.60 0.17 -5.40 16 3 C 0.28 12.96 2.24 44.25 0.10 13.05 16 4 H 0.00 0.05 7.58 -2.38 -0.02 0.04 16 5 C -0.54 -26.74 8.73 25.60 0.22 -26.51 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.91 -50.46 11.29 21.45 0.24 -50.21 16 9 Si 0.96 40.61 29.54 68.60 2.03 42.63 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 13 N -0.70 -24.09 5.01 -446.08 -2.23 -26.33 16 14 C 0.51 16.02 5.63 87.66 0.49 16.51 16 15 O -0.58 -22.81 12.67 -3.04 -0.04 -22.85 16 16 C -0.11 -2.15 3.54 -10.48 -0.04 -2.19 16 17 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.13 -2.67 6.40 30.59 0.20 -2.47 16 19 C 0.51 12.52 7.98 87.90 0.70 13.22 16 20 O -0.56 -16.38 15.64 -3.12 -0.05 -16.43 16 21 N -0.53 -11.72 3.16 -628.37 -1.99 -13.70 16 22 C -0.01 -0.31 6.80 37.62 0.26 -0.05 16 23 C 0.04 0.88 11.53 85.33 0.98 1.86 16 24 N -0.30 -6.28 12.69 -56.77 -0.72 -7.00 16 25 N -0.46 -7.88 7.40 -56.82 -0.42 -8.30 16 26 H 0.46 4.54 8.96 -213.34 -1.91 2.63 16 27 C 0.04 0.86 11.18 83.50 0.93 1.80 16 28 C 0.12 2.40 6.27 86.83 0.54 2.94 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 31 H 0.05 1.95 5.64 -2.39 -0.01 1.94 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 3.50 5.95 -2.39 -0.01 3.49 16 34 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.41 11.41 8.54 -92.71 -0.79 10.62 16 36 H 0.10 2.40 7.89 -2.39 -0.02 2.38 16 37 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.21 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.19 3.87 6.51 -2.91 -0.02 3.85 16 40 H 0.11 1.73 8.13 -2.39 -0.02 1.71 16 41 H 0.08 2.03 7.00 -2.39 -0.02 2.01 16 Total: -1.00 -69.08 338.99 0.82 -68.26 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -1.62 Total: 24.30 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.62 Total: 9.64 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -5.12 Total: -105.55 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.09 Total: -39.28 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -69.08 0.82 -68.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183943441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.167 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds