Wall clock time and date at job start Fri Apr 10 2020 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 N 1.46496 * 109.46895 * 180.02562 * 8 6 5 10 10 C 1.46763 * 124.35000 * 269.72848 * 9 8 6 11 11 C 1.54666 * 105.38493 * 162.85676 * 10 9 8 12 12 C 1.54632 * 101.68339 * 25.76261 * 11 10 9 13 13 C 1.34424 * 124.35268 * 90.02681 * 9 8 6 14 14 O 1.21281 * 124.93881 * 0.42634 * 13 9 8 15 15 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 16 16 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 17 17 C 1.46500 * 125.97897 * 359.96594 * 16 2 1 18 18 C 1.50698 * 109.46965 * 89.99833 * 17 16 2 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47006 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46890 * 120.00230 * 22 20 18 25 25 H 1.48501 * 109.46779 * 239.99778 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 30 30 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 31 31 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 32 32 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 33 33 H 1.09005 * 110.24547 * 281.97933 * 10 9 8 34 34 H 1.08995 * 110.24740 * 43.98012 * 10 9 8 35 35 H 1.08995 * 111.19004 * 267.59258 * 11 10 9 36 36 H 1.08990 * 110.82231 * 143.77403 * 11 10 9 37 37 H 1.08998 * 110.48400 * 216.30973 * 12 11 10 38 38 H 1.08997 * 110.59741 * 93.71923 * 12 11 10 39 39 H 1.08994 * 109.46840 * 210.00162 * 17 16 2 40 40 H 1.09004 * 109.46443 * 329.99889 * 17 16 2 41 41 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 7 5.4462 5.1033 0.0298 10 6 5.2184 5.9070 -1.1770 11 6 4.3981 7.1308 -0.7062 12 6 4.8103 7.2308 0.7808 13 6 5.2331 5.8245 1.1440 14 8 5.3615 5.4082 2.2759 15 7 3.6337 -0.6577 -0.0036 16 7 2.3016 -1.0910 -0.0059 17 6 1.8500 -2.4847 -0.0128 18 6 1.6945 -2.9553 -1.4359 19 1 1.9108 -2.2836 -2.2535 20 6 1.2760 -4.2434 -1.6941 21 7 1.0121 -5.0611 -0.6985 22 14 1.0838 -4.8270 -3.4582 23 1 1.4410 -3.7241 -4.3861 24 1 1.9823 -5.9849 -3.6971 25 1 -0.3242 -5.2362 -3.6935 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9719 2.1210 -0.0006 30 1 5.6584 1.0776 0.0055 31 1 6.4538 3.4885 0.9100 32 1 6.4541 3.4989 -0.8699 33 1 6.1697 6.2280 -1.6015 34 1 4.6515 5.3338 -1.9105 35 1 3.3279 6.9484 -0.8028 36 1 4.6906 8.0269 -1.2532 37 1 3.9634 7.5443 1.3911 38 1 5.6437 7.9229 0.9020 39 1 2.5849 -3.1072 0.4976 40 1 0.8916 -2.5584 0.5012 41 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271000096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:26 Heat of formation + Delta-G solvation = 13.622875 kcal Electronic energy + Delta-G solvation = -24565.788470 eV Core-core repulsion = 20868.719368 eV Total energy + Delta-G solvation = -3697.069102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96145 -40.46561 -39.02243 -36.56604 -34.85318 -33.46782 -33.12288 -31.45534 -30.86025 -28.12109 -27.81343 -26.48960 -26.29718 -23.18551 -22.27815 -21.72636 -19.90468 -19.77246 -19.11660 -17.31635 -17.01172 -16.72036 -16.45348 -16.00465 -15.72572 -15.26631 -15.01189 -14.34329 -14.19312 -13.98894 -13.95627 -13.75993 -13.26056 -12.95076 -12.85583 -12.50508 -12.49411 -12.33091 -12.05335 -11.76224 -11.68470 -11.42904 -11.33892 -11.08461 -10.87515 -10.44539 -10.28005 -10.05976 -10.03452 -9.75435 -9.52980 -8.95936 -8.66606 -7.95317 -7.47341 -6.27200 -4.35006 2.21065 2.27957 2.58739 2.87672 2.97808 3.18677 3.26644 3.32603 3.69030 3.85515 4.05756 4.17050 4.28618 4.51609 4.62249 4.71218 4.80822 4.97457 5.06401 5.14489 5.23014 5.40291 5.42851 5.49976 5.69522 5.70286 5.92884 6.07134 6.09025 6.22877 6.45608 6.54125 6.71000 6.80664 6.91986 7.04088 7.42510 7.61448 7.65772 7.87243 7.93060 8.03920 8.21107 8.63551 8.73782 9.31478 10.80111 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.002722 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.467857 B =10282.349969 C =10368.359837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.263 3.737 5 N -0.630 5.630 6 C 0.499 3.501 7 O -0.506 6.506 8 C 0.113 3.887 9 N -0.604 5.604 10 C 0.104 3.896 11 C -0.130 4.130 12 C -0.152 4.152 13 C 0.523 3.477 14 O -0.529 6.529 15 N -0.320 5.320 16 N -0.316 5.316 17 C 0.258 3.742 18 C -0.536 4.536 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.891 5.891 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.280 1.280 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.411 0.589 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 22.391 -1.521 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.010 3.990 5 N -0.278 5.278 6 C 0.282 3.718 7 O -0.379 6.379 8 C -0.013 4.013 9 N -0.338 5.338 10 C -0.019 4.019 11 C -0.168 4.168 12 C -0.192 4.192 13 C 0.311 3.689 14 O -0.404 6.404 15 N -0.150 5.150 16 N -0.099 5.099 17 C 0.140 3.860 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.175 0.825 30 H 0.246 0.754 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.159 21.130 -0.870 22.667 hybrid contribution -0.072 -0.209 -1.016 1.040 sum 8.087 20.921 -1.886 22.508 Atomic orbital electron populations 1.20378 0.87913 1.03836 1.02561 1.21064 0.94928 0.87143 1.00850 1.21220 0.89772 0.99715 1.21328 1.18988 0.87216 0.89587 1.03178 1.42448 1.07637 1.05020 1.72725 1.21187 0.92124 0.81751 0.76701 1.90649 1.26555 1.73751 1.46897 1.21109 0.94175 0.80014 1.06042 1.47792 1.68690 1.09330 1.08016 1.22168 1.00039 0.92313 0.87385 1.22611 1.01436 0.97920 0.94803 1.22295 1.03864 0.95015 0.98063 1.20958 0.75638 0.88237 0.84097 1.90744 1.51972 1.76275 1.21436 1.77251 0.99987 1.08482 1.29329 1.48997 1.00954 1.07791 1.52131 1.19701 0.96004 0.71313 0.98958 1.21360 1.46730 0.97994 0.91353 0.91699 1.24936 0.94684 0.96046 0.98156 1.69925 1.44896 1.06988 1.31102 0.86300 0.77887 0.78784 0.83715 1.19586 1.20644 1.20621 0.91067 0.89875 0.90662 0.82519 0.75424 0.86612 0.86780 0.90752 0.89988 0.89550 0.89149 0.87899 0.87821 0.92979 0.92782 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.19 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -6.07 9.52 -39.83 -0.38 -6.45 16 4 C 0.26 5.40 8.11 -154.38 -1.25 4.15 16 5 N -0.63 -9.63 5.45 -11.13 -0.06 -9.69 16 6 C 0.50 7.11 7.87 -10.98 -0.09 7.02 16 7 O -0.51 -8.99 13.56 5.55 0.08 -8.92 16 8 C 0.11 1.07 6.42 -5.19 -0.03 1.03 16 9 N -0.60 -5.99 2.42 -173.67 -0.42 -6.41 16 10 C 0.10 0.67 7.36 -3.02 -0.02 0.65 16 11 C -0.13 -0.71 7.19 -25.00 -0.18 -0.89 16 12 C -0.15 -1.11 6.86 -26.74 -0.18 -1.29 16 13 C 0.52 6.21 8.02 -10.86 -0.09 6.13 16 14 O -0.53 -8.65 17.59 5.56 0.10 -8.55 16 15 N -0.32 -7.45 12.59 31.44 0.40 -7.05 16 16 N -0.32 -7.59 3.59 -58.33 -0.21 -7.80 16 17 C 0.26 6.66 5.81 -5.19 -0.03 6.63 16 18 C -0.54 -14.76 9.39 -34.44 -0.32 -15.08 16 19 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 22 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.16 3.23 5.92 -52.49 -0.31 2.92 16 30 H 0.41 4.84 8.82 -40.82 -0.36 4.48 16 31 H 0.12 1.02 7.92 -51.93 -0.41 0.61 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.05 1.38 7.65 -51.93 -0.40 0.99 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -36.57 353.71 -7.62 -44.19 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.65 Total: 3.44 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.89 Total: 3.78 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.44 Total: -55.27 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.17 Total: -17.47 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.57 -7.62 -44.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271000096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.811 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds