Wall clock time and date at job start Fri Apr 10 2020 17:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 N 1.46496 * 109.46895 * 180.02562 * 8 6 5 10 10 C 1.46763 * 124.35000 * 269.72848 * 9 8 6 11 11 C 1.54666 * 105.38493 * 162.85676 * 10 9 8 12 12 C 1.54632 * 101.68339 * 25.76261 * 11 10 9 13 13 C 1.34424 * 124.35268 * 90.02681 * 9 8 6 14 14 O 1.21281 * 124.93881 * 0.42634 * 13 9 8 15 15 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 16 16 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 17 17 C 1.46500 * 125.97897 * 359.96594 * 16 2 1 18 18 C 1.50698 * 109.46965 * 89.99833 * 17 16 2 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47006 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46890 * 120.00230 * 22 20 18 25 25 H 1.48501 * 109.46779 * 239.99778 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 30 30 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 31 31 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 32 32 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 33 33 H 1.09005 * 110.24547 * 281.97933 * 10 9 8 34 34 H 1.08995 * 110.24740 * 43.98012 * 10 9 8 35 35 H 1.08995 * 111.19004 * 267.59258 * 11 10 9 36 36 H 1.08990 * 110.82231 * 143.77403 * 11 10 9 37 37 H 1.08998 * 110.48400 * 216.30973 * 12 11 10 38 38 H 1.08997 * 110.59741 * 93.71923 * 12 11 10 39 39 H 1.08994 * 109.46840 * 210.00162 * 17 16 2 40 40 H 1.09004 * 109.46443 * 329.99889 * 17 16 2 41 41 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 7 5.4462 5.1033 0.0298 10 6 5.2184 5.9070 -1.1770 11 6 4.3981 7.1308 -0.7062 12 6 4.8103 7.2308 0.7808 13 6 5.2331 5.8245 1.1440 14 8 5.3615 5.4082 2.2759 15 7 3.6337 -0.6577 -0.0036 16 7 2.3016 -1.0910 -0.0059 17 6 1.8500 -2.4847 -0.0128 18 6 1.6945 -2.9553 -1.4359 19 1 1.9108 -2.2836 -2.2535 20 6 1.2760 -4.2434 -1.6941 21 7 1.0121 -5.0611 -0.6985 22 14 1.0838 -4.8270 -3.4582 23 1 1.4410 -3.7241 -4.3861 24 1 1.9823 -5.9849 -3.6971 25 1 -0.3242 -5.2362 -3.6935 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9719 2.1210 -0.0006 30 1 5.6584 1.0776 0.0055 31 1 6.4538 3.4885 0.9100 32 1 6.4541 3.4989 -0.8699 33 1 6.1697 6.2280 -1.6015 34 1 4.6515 5.3338 -1.9105 35 1 3.3279 6.9484 -0.8028 36 1 4.6906 8.0269 -1.2532 37 1 3.9634 7.5443 1.3911 38 1 5.6437 7.9229 0.9020 39 1 2.5849 -3.1072 0.4976 40 1 0.8916 -2.5584 0.5012 41 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271000096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:25 Heat of formation + Delta-G solvation = -11.693057 kcal Electronic energy + Delta-G solvation = -24566.886251 eV Core-core repulsion = 20868.719368 eV Total energy + Delta-G solvation = -3698.166883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.36806 -41.53637 -40.25388 -37.44047 -36.35572 -35.33231 -33.95818 -33.00816 -32.65029 -29.27325 -28.43440 -28.11420 -27.88749 -25.03717 -23.19889 -22.70186 -21.33417 -21.09381 -20.27158 -18.83053 -18.32400 -18.02141 -17.52158 -17.28918 -16.89661 -16.73340 -16.31383 -16.00304 -15.66756 -15.12930 -14.77366 -14.72378 -14.55036 -14.36026 -13.86709 -13.79676 -13.74157 -13.59731 -13.37804 -13.20842 -13.04016 -12.84868 -12.70867 -12.28906 -12.26693 -12.10072 -11.87249 -11.60252 -11.36871 -11.12012 -10.91612 -10.75573 -9.80714 -9.62707 -9.18369 -8.34625 -6.52646 0.85924 1.15679 1.34066 1.36600 1.39102 1.50876 1.60867 1.97369 2.15483 2.30676 2.43315 2.95159 3.44266 3.50838 3.67006 3.87458 4.09666 4.11608 4.15369 4.23505 4.29188 4.43003 4.69343 4.71729 4.74116 4.74543 4.84064 4.91741 4.93926 4.97228 5.09410 5.11506 5.20347 5.27250 5.42286 5.51885 5.78562 5.89688 6.05672 6.22339 6.23253 6.59813 6.92149 7.07014 7.10609 7.18620 8.71841 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.002722 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.467857 B =10282.349969 C =10368.359837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.300 4.300 4 C 0.271 3.729 5 N -0.622 5.622 6 C 0.497 3.503 7 O -0.543 6.543 8 C 0.118 3.882 9 N -0.606 5.606 10 C 0.097 3.903 11 C -0.122 4.122 12 C -0.147 4.147 13 C 0.505 3.495 14 O -0.587 6.587 15 N -0.357 5.357 16 N -0.342 5.342 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.050 0.950 20 C 0.022 3.978 21 N -0.919 5.919 22 Si 0.974 3.026 23 H -0.273 1.273 24 H -0.274 1.274 25 H -0.267 1.267 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.163 0.837 30 H 0.427 0.573 31 H 0.124 0.876 32 H 0.163 0.837 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.024 0.976 40 H 0.051 0.949 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.980 24.323 -3.460 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.331 4.331 4 C 0.017 3.983 5 N -0.273 5.273 6 C 0.283 3.717 7 O -0.417 6.417 8 C -0.009 4.009 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.159 4.159 12 C -0.187 4.187 13 C 0.295 3.705 14 O -0.467 6.467 15 N -0.187 5.187 16 N -0.125 5.125 17 C 0.156 3.844 18 C -0.591 4.591 19 H 0.068 0.932 20 C -0.179 4.179 21 N -0.557 5.557 22 Si 0.797 3.203 23 H -0.197 1.197 24 H -0.199 1.199 25 H -0.192 1.192 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.180 0.820 30 H 0.265 0.735 31 H 0.141 0.859 32 H 0.180 0.820 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.148 0.852 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.927 23.090 -2.842 24.918 hybrid contribution -0.271 -0.701 -0.384 0.844 sum 8.656 22.389 -3.227 24.220 Atomic orbital electron populations 1.20500 0.85367 1.04449 1.04035 1.21748 0.96692 0.86480 0.99413 1.21387 0.90144 0.99712 1.21843 1.19373 0.88934 0.89257 1.00711 1.42634 1.07026 1.05117 1.72519 1.22251 0.93303 0.81326 0.74793 1.90622 1.28527 1.74201 1.48364 1.21322 0.91867 0.79007 1.08684 1.48074 1.67504 1.09409 1.08827 1.22487 1.01974 0.92052 0.85894 1.22657 1.00579 0.99021 0.93680 1.22358 1.04619 0.92552 0.99140 1.21847 0.74761 0.90193 0.83669 1.90703 1.54553 1.77769 1.23693 1.77172 1.00042 1.09955 1.31544 1.48801 1.01777 1.07524 1.54381 1.19260 0.94858 0.72351 0.97928 1.21452 1.47558 0.98423 0.91630 0.93172 1.25762 0.93892 0.95856 1.02398 1.70008 1.45039 1.07477 1.33166 0.85272 0.78486 0.78111 0.78389 1.19716 1.19931 1.19194 0.89072 0.91238 0.87943 0.82014 0.73455 0.85854 0.81975 0.87223 0.90533 0.90910 0.85577 0.88274 0.85179 0.95775 0.93137 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.94 9.89 71.24 0.70 -2.24 16 2 C 0.09 3.78 6.92 41.38 0.29 4.07 16 3 C -0.30 -12.67 9.52 22.11 0.21 -12.46 16 4 C 0.27 11.25 8.11 133.33 1.08 12.33 16 5 N -0.62 -18.61 5.45 -307.50 -1.68 -20.28 16 6 C 0.50 13.65 7.87 87.66 0.69 14.34 16 7 O -0.54 -19.09 13.56 -3.05 -0.04 -19.13 16 8 C 0.12 1.95 6.42 85.64 0.55 2.50 16 9 N -0.61 -10.72 2.42 -821.95 -1.99 -12.71 16 10 C 0.10 0.95 7.36 86.90 0.64 1.59 16 11 C -0.12 -0.97 7.19 31.72 0.23 -0.74 16 12 C -0.15 -1.84 6.86 30.59 0.21 -1.63 16 13 C 0.51 11.54 8.02 87.90 0.70 12.24 16 14 O -0.59 -19.50 17.59 -3.03 -0.05 -19.55 16 15 N -0.36 -17.03 12.59 -54.44 -0.69 -17.72 16 16 N -0.34 -16.94 3.59 -338.45 -1.22 -18.16 16 17 C 0.27 14.77 5.81 85.63 0.50 15.27 16 18 C -0.55 -31.16 9.39 25.60 0.24 -30.92 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 20 C 0.02 1.20 5.46 84.66 0.46 1.66 16 21 N -0.92 -52.14 13.29 21.45 0.28 -51.85 16 22 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.07 2.59 7.71 -2.39 -0.02 2.57 16 28 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 29 H 0.16 6.67 5.92 -2.91 -0.02 6.65 16 30 H 0.43 9.62 8.82 -92.71 -0.82 8.80 16 31 H 0.12 1.95 7.92 -2.39 -0.02 1.94 16 32 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 2.69 7.65 -2.39 -0.02 2.68 16 41 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -82.92 353.71 3.40 -79.52 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.24 Total: 18.86 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.50 Total: 16.00 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -5.28 Total: -120.73 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.09 Total: -38.68 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -82.92 3.40 -79.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271000096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.832 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds