Wall clock time and date at job start Fri Apr 10 2020 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35236 * 126.07045 * 2 1 4 4 C 1.40409 * 107.87135 * 180.02562 * 3 2 1 5 5 N 1.40153 * 125.97295 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00438 * 359.97438 * 5 4 3 7 7 O 1.21292 * 119.99385 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99962 * 179.97438 * 6 5 4 9 9 H 1.08994 * 110.85928 * 297.66560 * 8 6 5 10 10 C 1.54628 * 110.96774 * 61.46107 * 8 6 5 11 11 C 1.51284 * 104.19534 * 142.91437 * 10 8 6 12 12 O 1.21280 * 124.93900 * 163.71057 * 11 10 8 13 13 N 1.34419 * 110.11309 * 343.74482 * 11 10 8 14 14 C 1.46498 * 124.34356 * 179.57513 * 13 11 10 15 15 C 1.46755 * 111.30253 * 359.59281 * 13 11 10 16 16 N 1.31220 * 108.05034 * 359.71824 * 4 3 2 17 17 N 1.34972 * 126.06898 * 180.02562 * 2 1 3 18 18 C 1.46499 * 125.97476 * 359.97438 * 17 2 1 19 19 C 1.50701 * 109.46992 * 89.99778 * 18 17 2 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 90.00289 * 23 21 19 25 25 H 1.48505 * 109.47195 * 210.00171 * 23 21 19 26 26 H 1.48493 * 109.47449 * 330.00136 * 23 21 19 27 27 H 1.08999 * 109.47508 * 269.97974 * 1 2 3 28 28 H 1.09002 * 109.47088 * 29.98263 * 1 2 3 29 29 H 1.09005 * 109.47348 * 149.98008 * 1 2 3 30 30 H 1.08005 * 126.05975 * 0.03596 * 3 2 1 31 31 H 0.97001 * 119.99639 * 180.02562 * 5 4 3 32 32 H 1.09003 * 110.48248 * 261.58823 * 10 8 6 33 33 H 1.08995 * 110.49026 * 24.23158 * 10 8 6 34 34 H 1.09003 * 109.48006 * 0.02562 * 14 13 11 35 35 H 1.09002 * 109.47148 * 120.02453 * 14 13 11 36 36 H 1.08998 * 109.47086 * 240.01957 * 14 13 11 37 37 H 1.09004 * 110.24350 * 258.01334 * 15 13 11 38 38 H 1.08997 * 110.24600 * 136.02296 * 15 13 11 39 39 H 1.09002 * 109.47391 * 329.99768 * 18 17 2 40 40 H 1.09001 * 109.46813 * 209.99825 * 18 17 2 41 41 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7734 1.4750 -0.0003 6 6 4.6366 2.8158 0.0001 7 8 3.5301 3.3124 0.0007 8 6 5.8585 3.6978 0.0011 9 1 6.4496 3.5412 0.9034 10 6 6.7115 3.4628 -1.2671 11 6 7.2303 4.8380 -1.6254 12 8 8.1535 5.0571 -2.3807 13 7 6.5195 5.7817 -0.9841 14 6 6.7641 7.2215 -1.0993 15 6 5.4674 5.1843 -0.1535 16 7 3.6337 -0.6576 0.0052 17 7 2.3016 -1.0910 -0.0005 18 6 1.8500 -2.4846 -0.0006 19 6 1.6946 -2.9622 -1.4215 20 1 1.9110 -2.2945 -2.2423 21 6 1.2771 -4.2519 -1.6735 22 7 1.0140 -5.0650 -0.6739 23 14 1.0851 -4.8440 -3.4347 24 1 2.3662 -5.4321 -3.9016 25 1 0.0162 -5.8730 -3.4973 26 1 0.7203 -3.6978 -4.3054 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 1.9718 2.1210 0.0005 31 1 5.6583 1.0777 -0.0011 32 1 7.5392 2.7875 -1.0502 33 1 6.0950 3.0656 -2.0734 34 1 7.5999 7.3951 -1.7772 35 1 5.8721 7.7115 -1.4895 36 1 7.0024 7.6293 -0.1170 37 1 4.5007 5.2704 -0.6497 38 1 5.4359 5.6694 0.8220 39 1 0.8915 -2.5560 0.5136 40 1 2.5848 -3.1047 0.5129 41 1 0.7199 -5.9722 -0.8513 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271108208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:28 Heat of formation + Delta-G solvation = 11.972478 kcal Electronic energy + Delta-G solvation = -24452.877375 eV Core-core repulsion = 20755.736707 eV Total energy + Delta-G solvation = -3697.140668 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25548 -40.54364 -39.20764 -36.57372 -35.00128 -33.61984 -33.14812 -31.46132 -30.86789 -28.14772 -27.45890 -26.59642 -26.38869 -24.06810 -22.79064 -21.09824 -20.04323 -19.72470 -19.25890 -17.56654 -17.11506 -16.73617 -16.28035 -16.00901 -15.67069 -15.36169 -15.19613 -14.39398 -14.31529 -14.12740 -13.98902 -13.80627 -13.36420 -13.00947 -12.77103 -12.58660 -12.52333 -12.38704 -12.23076 -11.91682 -11.80971 -11.65188 -11.46415 -11.13128 -10.87409 -10.52721 -10.34577 -10.26303 -9.99852 -9.69124 -9.58907 -9.08446 -8.68057 -8.02534 -7.54939 -6.29435 -4.37327 2.10806 2.24907 2.45358 2.75394 2.82508 3.19524 3.26022 3.30379 3.59268 3.66975 3.84595 3.99553 4.27000 4.39264 4.47574 4.75595 4.91954 4.98073 5.04431 5.13443 5.20776 5.33400 5.37172 5.39117 5.51466 5.64619 5.87386 6.04495 6.08405 6.14863 6.40420 6.44686 6.63466 6.69632 6.87433 6.99924 7.33878 7.52227 7.63048 7.80491 7.84309 7.98082 8.06263 8.57121 8.70401 9.29417 10.77886 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.002798 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.523331 B =10005.726984 C =10635.778904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.290 4.290 4 C 0.260 3.740 5 N -0.625 5.625 6 C 0.531 3.469 7 O -0.510 6.510 8 C -0.119 4.119 9 H 0.124 0.876 10 C -0.149 4.149 11 C 0.521 3.479 12 O -0.531 6.531 13 N -0.624 5.624 14 C 0.093 3.907 15 C 0.119 3.881 16 N -0.318 5.318 17 N -0.315 5.315 18 C 0.258 3.742 19 C -0.538 4.538 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.412 0.588 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.145 19.463 3.894 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.007 3.993 5 N -0.272 5.272 6 C 0.316 3.684 7 O -0.383 6.383 8 C -0.141 4.141 9 H 0.142 0.858 10 C -0.190 4.190 11 C 0.309 3.691 12 O -0.407 6.407 13 N -0.359 5.359 14 C -0.048 4.048 15 C -0.004 4.004 16 N -0.148 5.148 17 N -0.098 5.098 18 C 0.140 3.860 19 C -0.576 4.576 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.177 0.823 31 H 0.247 0.753 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.471 18.677 3.546 20.426 hybrid contribution -0.088 -0.076 -0.823 0.831 sum 7.383 18.601 2.724 20.197 Atomic orbital electron populations 1.20387 0.87871 1.03943 1.02574 1.21080 0.94969 0.87121 1.00719 1.21230 0.89668 0.99795 1.21385 1.18966 0.87106 0.89627 1.03569 1.42387 1.07779 1.04904 1.72165 1.19982 0.90414 0.81554 0.76478 1.90677 1.26337 1.73729 1.47591 1.22197 0.95647 0.95213 1.01034 0.85793 1.22417 1.01574 0.96876 0.98106 1.20743 0.81562 0.87413 0.79428 1.90742 1.28841 1.84795 1.36321 1.48184 1.33933 1.06838 1.46956 1.21582 1.02425 0.78410 1.02427 1.21978 0.91672 0.90341 0.96451 1.77266 1.00036 1.08463 1.29062 1.49029 1.00925 1.07863 1.51938 1.19710 0.96014 0.71237 0.98992 1.21315 1.46963 0.97992 0.91334 0.91729 1.24928 0.94618 0.96055 0.98148 1.69917 1.44811 1.07109 1.31052 0.86353 0.78053 0.78606 0.83675 1.20311 1.20854 1.19632 0.91029 0.90588 0.89858 0.82323 0.75256 0.86693 0.86836 0.89841 0.91801 0.91860 0.88748 0.89358 0.92745 0.92959 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.89 36.00 0.36 -1.11 16 2 C 0.09 1.87 6.92 -82.28 -0.57 1.30 16 3 C -0.29 -5.58 9.52 -39.83 -0.38 -5.96 16 4 C 0.26 4.90 8.11 -154.39 -1.25 3.65 16 5 N -0.63 -8.39 5.40 -11.13 -0.06 -8.45 16 6 C 0.53 6.24 7.04 -10.99 -0.08 6.16 16 7 O -0.51 -7.57 12.70 5.55 0.07 -7.50 16 8 C -0.12 -0.89 3.55 -90.14 -0.32 -1.21 16 9 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 10 C -0.15 -1.20 6.37 -26.74 -0.17 -1.37 16 11 C 0.52 5.58 8.02 -10.86 -0.09 5.49 16 12 O -0.53 -7.72 17.35 5.56 0.10 -7.63 16 13 N -0.62 -5.34 3.33 -180.29 -0.60 -5.94 16 14 C 0.09 0.61 11.14 59.85 0.67 1.27 16 15 C 0.12 0.88 6.66 -3.13 -0.02 0.86 16 16 N -0.32 -6.99 12.59 31.44 0.40 -6.59 16 17 N -0.32 -7.21 3.59 -58.33 -0.21 -7.42 16 18 C 0.26 6.45 5.81 -5.19 -0.03 6.42 16 19 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 20 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 23 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.47 7.71 -51.93 -0.40 1.07 16 30 H 0.16 2.92 5.92 -52.48 -0.31 2.61 16 31 H 0.41 4.31 8.82 -40.82 -0.36 3.95 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.99 7.89 -51.93 -0.41 0.58 16 34 H 0.08 0.63 7.53 -51.93 -0.39 0.24 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.83 7.06 -51.93 -0.37 0.47 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 1.34 7.65 -51.93 -0.40 0.95 16 40 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -34.09 350.82 -7.17 -41.26 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.56 Total: 2.77 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.30 Total: 2.35 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.26 Total: -52.32 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.17 Total: -15.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.09 -7.17 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271108208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.234 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds