Wall clock time and date at job start Fri Apr 10 2020 17:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35236 * 126.07045 * 2 1 4 4 C 1.40409 * 107.87135 * 180.02562 * 3 2 1 5 5 N 1.40153 * 125.97295 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00438 * 359.97438 * 5 4 3 7 7 O 1.21292 * 119.99385 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99962 * 179.97438 * 6 5 4 9 9 H 1.08994 * 110.85928 * 297.66560 * 8 6 5 10 10 C 1.54628 * 110.96774 * 61.46107 * 8 6 5 11 11 C 1.51284 * 104.19534 * 142.91437 * 10 8 6 12 12 O 1.21280 * 124.93900 * 163.71057 * 11 10 8 13 13 N 1.34419 * 110.11309 * 343.74482 * 11 10 8 14 14 C 1.46498 * 124.34356 * 179.57513 * 13 11 10 15 15 C 1.46755 * 111.30253 * 359.59281 * 13 11 10 16 16 N 1.31220 * 108.05034 * 359.71824 * 4 3 2 17 17 N 1.34972 * 126.06898 * 180.02562 * 2 1 3 18 18 C 1.46499 * 125.97476 * 359.97438 * 17 2 1 19 19 C 1.50701 * 109.46992 * 89.99778 * 18 17 2 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 90.00289 * 23 21 19 25 25 H 1.48505 * 109.47195 * 210.00171 * 23 21 19 26 26 H 1.48493 * 109.47449 * 330.00136 * 23 21 19 27 27 H 1.08999 * 109.47508 * 269.97974 * 1 2 3 28 28 H 1.09002 * 109.47088 * 29.98263 * 1 2 3 29 29 H 1.09005 * 109.47348 * 149.98008 * 1 2 3 30 30 H 1.08005 * 126.05975 * 0.03596 * 3 2 1 31 31 H 0.97001 * 119.99639 * 180.02562 * 5 4 3 32 32 H 1.09003 * 110.48248 * 261.58823 * 10 8 6 33 33 H 1.08995 * 110.49026 * 24.23158 * 10 8 6 34 34 H 1.09003 * 109.48006 * 0.02562 * 14 13 11 35 35 H 1.09002 * 109.47148 * 120.02453 * 14 13 11 36 36 H 1.08998 * 109.47086 * 240.01957 * 14 13 11 37 37 H 1.09004 * 110.24350 * 258.01334 * 15 13 11 38 38 H 1.08997 * 110.24600 * 136.02296 * 15 13 11 39 39 H 1.09002 * 109.47391 * 329.99768 * 18 17 2 40 40 H 1.09001 * 109.46813 * 209.99825 * 18 17 2 41 41 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7734 1.4750 -0.0003 6 6 4.6366 2.8158 0.0001 7 8 3.5301 3.3124 0.0007 8 6 5.8585 3.6978 0.0011 9 1 6.4496 3.5412 0.9034 10 6 6.7115 3.4628 -1.2671 11 6 7.2303 4.8380 -1.6254 12 8 8.1535 5.0571 -2.3807 13 7 6.5195 5.7817 -0.9841 14 6 6.7641 7.2215 -1.0993 15 6 5.4674 5.1843 -0.1535 16 7 3.6337 -0.6576 0.0052 17 7 2.3016 -1.0910 -0.0005 18 6 1.8500 -2.4846 -0.0006 19 6 1.6946 -2.9622 -1.4215 20 1 1.9110 -2.2945 -2.2423 21 6 1.2771 -4.2519 -1.6735 22 7 1.0140 -5.0650 -0.6739 23 14 1.0851 -4.8440 -3.4347 24 1 2.3662 -5.4321 -3.9016 25 1 0.0162 -5.8730 -3.4973 26 1 0.7203 -3.6978 -4.3054 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 1.9718 2.1210 0.0005 31 1 5.6583 1.0777 -0.0011 32 1 7.5392 2.7875 -1.0502 33 1 6.0950 3.0656 -2.0734 34 1 7.5999 7.3951 -1.7772 35 1 5.8721 7.7115 -1.4895 36 1 7.0024 7.6293 -0.1170 37 1 4.5007 5.2704 -0.6497 38 1 5.4359 5.6694 0.8220 39 1 0.8915 -2.5560 0.5136 40 1 2.5848 -3.1047 0.5129 41 1 0.7199 -5.9722 -0.8513 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271108208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:27 Heat of formation + Delta-G solvation = -11.351127 kcal Electronic energy + Delta-G solvation = -24453.888762 eV Core-core repulsion = 20755.736707 eV Total energy + Delta-G solvation = -3698.152056 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.39665 -41.69971 -40.28258 -37.43976 -36.33590 -35.33075 -34.06989 -32.88359 -32.57574 -29.02765 -28.57317 -27.89602 -27.73086 -25.34627 -24.27044 -22.21062 -21.28483 -20.63536 -20.52595 -18.80319 -18.46373 -17.89880 -17.62593 -17.06791 -16.89036 -16.48821 -16.39326 -16.03138 -15.68685 -15.08282 -14.79863 -14.67388 -14.57055 -14.32297 -14.09659 -13.78451 -13.58998 -13.55843 -13.36276 -13.17514 -13.12338 -12.82306 -12.69266 -12.54293 -12.40600 -12.23747 -12.08863 -11.53353 -11.34009 -11.19804 -10.79740 -10.73059 -9.77117 -9.56830 -9.13209 -8.32837 -6.50335 0.89751 1.29306 1.37693 1.38714 1.41188 1.45302 1.50989 1.99260 2.20093 2.28526 2.39908 2.97101 3.08696 3.26684 3.60265 3.82538 3.89692 4.13509 4.17794 4.37396 4.45578 4.49573 4.61443 4.67092 4.75640 4.78135 4.81071 4.87513 4.88562 4.91447 5.00746 5.02649 5.15818 5.28360 5.46057 5.53904 5.81467 5.96131 5.99395 6.26593 6.26917 6.62516 6.96147 7.04131 7.11267 7.20824 8.73020 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.002798 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.523331 B =10005.726984 C =10635.778904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.086 3.914 3 C -0.296 4.296 4 C 0.272 3.728 5 N -0.619 5.619 6 C 0.536 3.464 7 O -0.537 6.537 8 C -0.100 4.100 9 H 0.163 0.837 10 C -0.145 4.145 11 C 0.512 3.488 12 O -0.578 6.578 13 N -0.620 5.620 14 C 0.087 3.913 15 C 0.119 3.881 16 N -0.357 5.357 17 N -0.344 5.344 18 C 0.276 3.724 19 C -0.553 4.553 20 H 0.049 0.951 21 C 0.024 3.976 22 N -0.918 5.918 23 Si 0.969 3.031 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.171 0.829 31 H 0.427 0.573 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.051 0.949 40 H 0.025 0.975 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 20.943 4.156 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.327 4.327 4 C 0.018 3.982 5 N -0.269 5.269 6 C 0.323 3.677 7 O -0.412 6.412 8 C -0.121 4.121 9 H 0.180 0.820 10 C -0.185 4.185 11 C 0.301 3.699 12 O -0.458 6.458 13 N -0.353 5.353 14 C -0.054 4.054 15 C -0.004 4.004 16 N -0.188 5.188 17 N -0.126 5.126 18 C 0.157 3.843 19 C -0.591 4.591 20 H 0.068 0.932 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.793 3.207 24 H -0.201 1.201 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.188 0.812 31 H 0.265 0.735 32 H 0.155 0.845 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.135 0.865 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.606 20.197 3.837 21.920 hybrid contribution -0.123 -0.372 -0.859 0.944 sum 7.482 19.825 2.977 21.398 Atomic orbital electron populations 1.20501 0.85554 1.04316 1.04098 1.21766 0.96643 0.86562 0.99502 1.21447 0.89860 0.99915 1.21485 1.19330 0.88868 0.89188 1.00840 1.42562 1.07005 1.05091 1.72197 1.20724 0.91393 0.80902 0.74694 1.90661 1.28023 1.74019 1.48494 1.22185 0.93555 0.94024 1.02375 0.81966 1.22420 1.02156 0.95912 0.98013 1.21137 0.81138 0.88673 0.78942 1.90717 1.31049 1.85585 1.38485 1.48346 1.33335 1.07494 1.46174 1.21759 1.02516 0.77496 1.03645 1.22071 0.90554 0.90373 0.97390 1.77184 0.99989 1.10197 1.31413 1.48786 1.01848 1.07499 1.54508 1.19223 0.94896 0.72531 0.97671 1.21441 1.47485 0.98325 0.91842 0.93239 1.25710 0.93990 0.95978 1.02089 1.69996 1.45104 1.07531 1.32948 0.85382 0.78245 0.78211 0.78826 1.20056 1.19576 1.19414 0.88877 0.87902 0.91644 0.81217 0.73508 0.84498 0.87630 0.91291 0.90588 0.89415 0.90068 0.86534 0.93089 0.95740 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.76 9.89 71.23 0.70 -2.06 16 2 C 0.09 3.44 6.92 41.38 0.29 3.72 16 3 C -0.30 -11.17 9.52 22.11 0.21 -10.95 16 4 C 0.27 10.08 8.11 133.33 1.08 11.16 16 5 N -0.62 -15.50 5.40 -307.51 -1.66 -17.16 16 6 C 0.54 11.28 7.04 87.66 0.62 11.89 16 7 O -0.54 -14.84 12.70 -3.07 -0.04 -14.88 16 8 C -0.10 -1.16 3.55 -10.48 -0.04 -1.19 16 9 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 10 C -0.14 -2.00 6.37 30.59 0.19 -1.81 16 11 C 0.51 10.25 8.02 87.90 0.71 10.95 16 12 O -0.58 -16.72 17.35 -3.03 -0.05 -16.77 16 13 N -0.62 -9.23 3.33 -842.92 -2.81 -12.04 16 14 C 0.09 0.96 11.14 127.77 1.42 2.38 16 15 C 0.12 1.39 6.66 86.83 0.58 1.97 16 16 N -0.36 -15.93 12.59 -54.45 -0.69 -16.61 16 17 N -0.34 -16.09 3.59 -338.45 -1.22 -17.31 16 18 C 0.28 14.29 5.81 85.63 0.50 14.79 16 19 C -0.55 -30.54 9.39 25.60 0.24 -30.30 16 20 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 21 C 0.02 1.27 5.46 84.66 0.46 1.73 16 22 N -0.92 -51.28 13.29 21.45 0.28 -51.00 16 23 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.06 2.32 7.71 -2.38 -0.02 2.30 16 30 H 0.17 6.00 5.92 -2.91 -0.02 5.98 16 31 H 0.43 8.04 8.82 -92.71 -0.82 7.22 16 32 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 1.69 7.89 -2.39 -0.02 1.67 16 34 H 0.07 0.99 7.53 -2.39 -0.02 0.97 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.08 1.24 7.06 -2.38 -0.02 1.22 16 38 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 2.62 7.65 -2.39 -0.02 2.60 16 40 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -75.88 350.82 3.06 -72.82 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.25 Total: 15.98 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.96 Total: 12.29 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -6.09 Total: -114.13 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.09 Total: -31.65 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -75.88 3.06 -72.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271108208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.473 kcal (2) G-P(sol) polarization free energy of solvation -75.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds