Wall clock time and date at job start Fri Apr 10 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47099 * 180.27038 * 3 2 1 5 5 H 1.48506 * 109.47102 * 300.27287 * 3 2 1 6 6 H 1.48500 * 109.47086 * 60.26681 * 3 2 1 7 7 C 1.38808 * 120.00014 * 180.26480 * 2 1 3 8 8 H 1.07998 * 120.00129 * 179.72888 * 7 2 1 9 9 N 1.36945 * 120.00272 * 359.73538 * 7 2 1 10 10 C 1.46490 * 120.00137 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.49768 * 299.99373 * 10 9 7 12 12 O 1.42901 * 109.46848 * 60.00513 * 11 10 9 13 13 C 1.53038 * 109.49786 * 179.97438 * 10 9 7 14 14 C 1.53109 * 109.50516 * 301.37944 * 13 10 9 15 15 C 1.53187 * 109.32824 * 298.65764 * 14 13 10 16 16 N 1.46931 * 108.77769 * 54.63053 * 15 14 13 17 17 C 1.34783 * 120.62659 * 126.41014 * 16 15 14 18 18 O 1.21470 * 119.99474 * 175.83832 * 17 16 15 19 19 C 1.48534 * 120.00181 * 355.83882 * 17 16 15 20 20 N 1.32459 * 119.18394 * 44.79720 * 19 17 16 21 21 C 1.32116 * 120.76747 * 179.71892 * 20 19 17 22 22 C 1.38804 * 119.16161 * 0.53824 * 21 20 19 23 23 C 1.38806 * 118.50503 * 359.73479 * 22 21 20 24 24 N 1.32111 * 119.16642 * 359.97438 * 23 22 21 25 25 C 1.46916 * 118.73787 * 306.39482 * 16 15 14 26 26 H 0.96998 * 120.00492 * 359.73394 * 1 2 3 27 27 H 0.97004 * 119.99469 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47235 * 179.97438 * 11 10 9 29 29 H 1.08993 * 109.47122 * 300.00353 * 11 10 9 30 30 H 0.96698 * 114.00358 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46187 * 61.43459 * 13 10 9 32 32 H 1.09004 * 109.46511 * 181.39082 * 13 10 9 33 33 H 1.09000 * 109.48997 * 178.70011 * 14 13 10 34 34 H 1.08999 * 109.50927 * 58.62581 * 14 13 10 35 35 H 1.09000 * 109.58929 * 294.84413 * 15 14 13 36 36 H 1.08998 * 109.58864 * 174.42174 * 15 14 13 37 37 H 1.07993 * 120.42543 * 180.27194 * 21 20 19 38 38 H 1.07999 * 120.75268 * 179.75552 * 22 21 20 39 39 H 1.08002 * 120.41610 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.58934 * 293.81539 * 25 16 15 41 41 H 1.09005 * 109.70286 * 173.46407 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0066 5 1 1.8864 2.3993 -1.2092 6 1 1.8963 2.3936 1.2157 7 6 2.0102 -1.2021 -0.0056 8 1 3.0902 -1.2021 -0.0100 9 7 1.3256 -2.3881 -0.0056 10 6 2.0580 -3.6567 -0.0120 11 6 2.9323 -3.7353 -1.2652 12 8 3.8612 -2.6493 -1.2667 13 6 1.0641 -4.8204 -0.0099 14 6 0.1666 -4.7240 1.2267 15 6 1.0296 -4.8222 2.4885 16 7 2.0801 -3.7968 2.4240 17 6 2.2494 -2.9227 3.4358 18 8 3.1684 -2.1289 3.4052 19 6 1.3124 -2.9299 4.5882 20 7 0.9638 -4.0873 5.1300 21 6 0.1368 -4.1298 6.1595 22 6 -0.3759 -2.9430 6.6646 23 6 0.0067 -1.7492 6.0686 24 7 0.8422 -1.7792 5.0456 25 6 2.9425 -3.7429 1.2358 26 1 -0.4851 0.8400 0.0039 27 1 0.3555 -2.3881 -0.0013 28 1 3.4775 -4.6791 -1.2693 29 1 2.3019 -3.6755 -2.1523 30 1 4.4490 -2.6356 -2.0344 31 1 0.4503 -4.7754 -0.9095 32 1 1.6096 -5.7640 0.0102 33 1 -0.5563 -5.5397 1.2160 34 1 -0.3610 -3.7702 1.2201 35 1 1.4865 -5.8103 2.5428 36 1 0.4096 -4.6551 3.3693 37 1 -0.1402 -5.0762 6.5997 38 1 -1.0570 -2.9481 7.5028 39 1 -0.3739 -0.8078 6.4364 40 1 3.5553 -4.6430 1.1879 41 1 3.5864 -2.8649 1.2886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673700051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:26 Heat of formation + Delta-G solvation = 8.384969 kcal Electronic energy + Delta-G solvation = -26757.445018 eV Core-core repulsion = 23060.148783 eV Total energy + Delta-G solvation = -3697.296234 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20234 -39.47733 -37.59432 -35.72866 -34.06244 -33.54210 -32.39348 -31.91565 -30.97411 -28.55003 -26.37810 -25.28946 -24.52987 -24.03549 -23.42247 -21.63816 -20.28694 -18.42571 -17.74605 -17.37828 -17.04304 -16.27485 -16.14594 -15.77190 -15.12007 -14.94186 -14.58943 -14.14659 -13.97620 -13.78309 -13.66260 -13.36345 -13.19417 -12.98831 -12.63681 -12.19514 -12.01680 -11.57838 -11.34852 -11.09164 -10.91511 -10.67406 -10.63292 -10.56105 -10.29957 -10.09353 -9.76319 -9.64734 -9.49838 -9.37874 -9.23109 -8.93368 -8.74120 -8.02991 -6.74967 -5.50620 -2.76316 0.61638 1.04836 2.92689 3.16938 3.63514 3.71030 3.75234 3.76725 4.17292 4.36799 4.48521 4.81523 4.83475 4.86737 4.98043 5.13777 5.25341 5.30795 5.49705 5.53783 5.63211 5.66797 5.86750 5.89637 5.92453 5.96883 6.09031 6.13770 6.21224 6.24361 6.33511 6.43034 6.65264 6.82828 6.85602 6.93907 7.11370 7.81999 8.01213 8.22929 8.42213 8.63576 8.67090 9.80993 10.28352 10.63743 11.73040 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.006644 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.663921 B = 4213.239615 C = 5420.767417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.022 4.022 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.296 1.296 7 C -0.200 4.200 8 H 0.093 0.907 9 N -0.703 5.703 10 C 0.188 3.812 11 C 0.077 3.923 12 O -0.540 6.540 13 C -0.115 4.115 14 C -0.135 4.135 15 C 0.108 3.892 16 N -0.573 5.573 17 C 0.595 3.405 18 O -0.503 6.503 19 C 0.305 3.695 20 N -0.495 5.495 21 C 0.138 3.862 22 C -0.221 4.221 23 C 0.148 3.852 24 N -0.466 5.466 25 C 0.112 3.888 26 H 0.247 0.753 27 H 0.381 0.619 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.354 0.646 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.172 0.828 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.050 0.950 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 -14.524 8.869 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.216 4.216 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.224 1.224 7 C -0.331 4.331 8 H 0.110 0.890 9 N -0.343 5.343 10 C 0.094 3.906 11 C -0.004 4.004 12 O -0.343 6.343 13 C -0.153 4.153 14 C -0.173 4.173 15 C -0.015 4.015 16 N -0.305 5.305 17 C 0.377 3.623 18 O -0.375 6.375 19 C 0.035 3.965 20 N -0.213 5.213 21 C -0.029 4.029 22 C -0.243 4.243 23 C -0.019 4.019 24 N -0.181 5.181 25 C -0.012 4.012 26 H 0.057 0.943 27 H 0.216 0.784 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.198 0.802 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.190 0.810 38 H 0.168 0.832 39 H 0.190 0.810 40 H 0.069 0.931 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.731 -13.769 8.613 16.257 hybrid contribution -0.530 0.817 0.267 1.009 sum -1.261 -12.952 8.880 15.754 Atomic orbital electron populations 1.69666 1.05027 1.24846 1.60038 1.24656 0.95357 0.97467 1.04071 0.86137 0.79228 0.84649 0.76482 1.20490 1.22673 1.22381 1.19578 0.91999 0.83003 1.38538 0.88974 1.42439 1.05197 0.99273 1.87429 1.19962 0.90961 0.88199 0.91495 1.22736 0.91003 0.87543 0.99125 1.86888 1.50420 1.49675 1.47269 1.21636 0.97784 0.97533 0.98324 1.21926 0.97945 1.02947 0.94472 1.21919 0.89738 0.90871 0.98996 1.47503 1.34090 1.31160 1.17707 1.17063 0.83526 0.80811 0.80868 1.90795 1.31564 1.37697 1.77454 1.23144 0.93820 0.84220 0.95350 1.68529 1.13354 1.29217 1.10152 1.23284 0.90378 0.98951 0.90246 1.23089 1.03076 0.95027 1.03151 1.23414 0.90226 0.99035 0.89182 1.68379 1.08985 1.29559 1.11128 1.22216 0.92757 1.02284 0.83919 0.94279 0.78406 0.95762 0.94138 0.80151 0.91485 0.91868 0.91474 0.90385 0.91604 0.89166 0.81050 0.83205 0.80953 0.93138 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.80 13.06 55.49 0.72 -29.08 16 2 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 3 Si 0.90 24.91 29.55 -169.99 -5.02 19.89 16 4 H -0.28 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 6 H -0.30 -8.36 7.11 56.52 0.40 -7.96 16 7 C -0.20 -5.75 8.21 -15.06 -0.12 -5.87 16 8 H 0.09 2.73 5.28 -52.49 -0.28 2.45 16 9 N -0.70 -17.47 4.75 -47.13 -0.22 -17.70 16 10 C 0.19 3.64 0.68 -131.71 -0.09 3.55 16 11 C 0.08 1.35 6.08 37.16 0.23 1.58 16 12 O -0.54 -10.49 10.10 -35.23 -0.36 -10.85 16 13 C -0.11 -1.77 4.77 -26.66 -0.13 -1.89 16 14 C -0.13 -2.05 5.91 -26.58 -0.16 -2.21 16 15 C 0.11 1.67 6.04 -3.71 -0.02 1.65 16 16 N -0.57 -11.16 2.89 -173.63 -0.50 -11.66 16 17 C 0.60 13.20 7.56 -12.01 -0.09 13.11 16 18 O -0.50 -13.10 16.53 5.39 0.09 -13.01 16 19 C 0.30 5.80 6.69 -157.08 -1.05 4.75 16 20 N -0.50 -7.38 7.62 -11.12 -0.08 -7.46 16 21 C 0.14 1.45 11.30 -17.22 -0.19 1.25 16 22 C -0.22 -2.13 10.18 -39.16 -0.40 -2.53 16 23 C 0.15 1.95 11.30 -17.22 -0.19 1.76 16 24 N -0.47 -8.91 10.34 -11.12 -0.12 -9.03 16 25 C 0.11 2.23 4.84 -3.72 -0.02 2.21 16 26 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.38 10.17 6.42 -40.82 -0.26 9.91 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.35 5.06 9.12 45.56 0.42 5.47 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.48 6.75 -51.93 -0.35 1.13 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.39 4.75 -51.93 -0.25 1.14 16 37 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.11 2.54 5.74 -51.93 -0.30 2.24 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -38.62 332.76 -7.20 -45.82 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -4.38 Total: 11.49 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: -2.34 Total: 16.58 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -0.20 Total: -74.93 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.27 Total: -23.87 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.02 Total: 19.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -38.62 -7.20 -45.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673700051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.205 kcal (2) G-P(sol) polarization free energy of solvation -38.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds