Wall clock time and date at job start Fri Apr 10 2020 17:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47099 * 180.27038 * 3 2 1 5 5 H 1.48506 * 109.47102 * 300.27287 * 3 2 1 6 6 H 1.48500 * 109.47086 * 60.26681 * 3 2 1 7 7 C 1.38808 * 120.00014 * 180.26480 * 2 1 3 8 8 H 1.07998 * 120.00129 * 179.72888 * 7 2 1 9 9 N 1.36945 * 120.00272 * 359.73538 * 7 2 1 10 10 C 1.46490 * 120.00137 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.49768 * 299.99373 * 10 9 7 12 12 O 1.42901 * 109.46848 * 60.00513 * 11 10 9 13 13 C 1.53038 * 109.49786 * 179.97438 * 10 9 7 14 14 C 1.53109 * 109.50516 * 301.37944 * 13 10 9 15 15 C 1.53187 * 109.32824 * 298.65764 * 14 13 10 16 16 N 1.46931 * 108.77769 * 54.63053 * 15 14 13 17 17 C 1.34783 * 120.62659 * 126.41014 * 16 15 14 18 18 O 1.21470 * 119.99474 * 175.83832 * 17 16 15 19 19 C 1.48534 * 120.00181 * 355.83882 * 17 16 15 20 20 N 1.32459 * 119.18394 * 44.79720 * 19 17 16 21 21 C 1.32116 * 120.76747 * 179.71892 * 20 19 17 22 22 C 1.38804 * 119.16161 * 0.53824 * 21 20 19 23 23 C 1.38806 * 118.50503 * 359.73479 * 22 21 20 24 24 N 1.32111 * 119.16642 * 359.97438 * 23 22 21 25 25 C 1.46916 * 118.73787 * 306.39482 * 16 15 14 26 26 H 0.96998 * 120.00492 * 359.73394 * 1 2 3 27 27 H 0.97004 * 119.99469 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47235 * 179.97438 * 11 10 9 29 29 H 1.08993 * 109.47122 * 300.00353 * 11 10 9 30 30 H 0.96698 * 114.00358 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46187 * 61.43459 * 13 10 9 32 32 H 1.09004 * 109.46511 * 181.39082 * 13 10 9 33 33 H 1.09000 * 109.48997 * 178.70011 * 14 13 10 34 34 H 1.08999 * 109.50927 * 58.62581 * 14 13 10 35 35 H 1.09000 * 109.58929 * 294.84413 * 15 14 13 36 36 H 1.08998 * 109.58864 * 174.42174 * 15 14 13 37 37 H 1.07993 * 120.42543 * 180.27194 * 21 20 19 38 38 H 1.07999 * 120.75268 * 179.75552 * 22 21 20 39 39 H 1.08002 * 120.41610 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.58934 * 293.81539 * 25 16 15 41 41 H 1.09005 * 109.70286 * 173.46407 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0066 5 1 1.8864 2.3993 -1.2092 6 1 1.8963 2.3936 1.2157 7 6 2.0102 -1.2021 -0.0056 8 1 3.0902 -1.2021 -0.0100 9 7 1.3256 -2.3881 -0.0056 10 6 2.0580 -3.6567 -0.0120 11 6 2.9323 -3.7353 -1.2652 12 8 3.8612 -2.6493 -1.2667 13 6 1.0641 -4.8204 -0.0099 14 6 0.1666 -4.7240 1.2267 15 6 1.0296 -4.8222 2.4885 16 7 2.0801 -3.7968 2.4240 17 6 2.2494 -2.9227 3.4358 18 8 3.1684 -2.1289 3.4052 19 6 1.3124 -2.9299 4.5882 20 7 0.9638 -4.0873 5.1300 21 6 0.1368 -4.1298 6.1595 22 6 -0.3759 -2.9430 6.6646 23 6 0.0067 -1.7492 6.0686 24 7 0.8422 -1.7792 5.0456 25 6 2.9425 -3.7429 1.2358 26 1 -0.4851 0.8400 0.0039 27 1 0.3555 -2.3881 -0.0013 28 1 3.4775 -4.6791 -1.2693 29 1 2.3019 -3.6755 -2.1523 30 1 4.4490 -2.6356 -2.0344 31 1 0.4503 -4.7754 -0.9095 32 1 1.6096 -5.7640 0.0102 33 1 -0.5563 -5.5397 1.2160 34 1 -0.3610 -3.7702 1.2201 35 1 1.4865 -5.8103 2.5428 36 1 0.4096 -4.6551 3.3693 37 1 -0.1402 -5.0762 6.5997 38 1 -1.0570 -2.9481 7.5028 39 1 -0.3739 -0.8078 6.4364 40 1 3.5553 -4.6430 1.1879 41 1 3.5864 -2.8649 1.2886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673700051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:25 Heat of formation + Delta-G solvation = -24.423605 kcal Electronic energy + Delta-G solvation = -26758.867704 eV Core-core repulsion = 23060.148783 eV Total energy + Delta-G solvation = -3698.718921 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.35509 -40.90835 -39.18482 -37.20295 -35.65488 -34.87996 -34.01823 -33.08660 -32.57066 -30.45178 -27.77336 -26.61542 -25.66100 -25.49418 -25.23090 -22.99476 -21.63921 -19.95835 -19.33676 -18.81289 -18.44070 -17.78671 -17.52701 -17.07456 -16.52581 -16.32979 -15.96076 -15.82586 -15.51962 -15.30424 -15.00318 -14.75329 -14.54910 -14.48624 -14.14715 -13.68134 -13.56697 -13.24568 -12.94224 -12.73463 -12.61585 -12.29842 -12.18131 -12.04923 -11.91478 -11.64167 -11.41369 -11.33879 -11.07436 -10.81382 -10.61112 -10.54161 -10.32525 -9.60045 -8.82198 -7.82430 -5.03227 -0.46074 0.10805 1.36969 1.42479 1.45335 1.50682 1.84922 2.62911 2.66967 2.93093 3.31844 3.40139 3.67495 3.68003 3.82522 3.88018 3.98294 4.08301 4.13004 4.17633 4.29352 4.38589 4.55556 4.61379 4.70477 4.75227 4.78557 4.83258 4.93215 5.00645 5.03655 5.16138 5.30871 5.42257 5.48186 5.64351 5.91137 5.92626 6.34860 6.43331 6.87544 7.10403 7.19064 7.51436 8.20608 8.42532 9.42088 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.006644 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.663921 B = 4213.239615 C = 5420.767417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.091 4.091 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.310 1.310 7 C -0.168 4.168 8 H 0.082 0.918 9 N -0.710 5.710 10 C 0.173 3.827 11 C 0.078 3.922 12 O -0.575 6.575 13 C -0.108 4.108 14 C -0.129 4.129 15 C 0.105 3.895 16 N -0.571 5.571 17 C 0.577 3.423 18 O -0.569 6.569 19 C 0.272 3.728 20 N -0.495 5.495 21 C 0.136 3.864 22 C -0.182 4.182 23 C 0.122 3.878 24 N -0.528 5.528 25 C 0.114 3.886 26 H 0.239 0.761 27 H 0.370 0.630 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.376 0.624 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.031 0.969 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.227 0.773 38 H 0.206 0.794 39 H 0.196 0.804 40 H 0.088 0.912 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -18.536 10.152 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.280 4.280 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.239 1.239 7 C -0.301 4.301 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.082 3.918 11 C -0.002 4.002 12 O -0.381 6.381 13 C -0.146 4.146 14 C -0.167 4.167 15 C -0.016 4.016 16 N -0.302 5.302 17 C 0.361 3.639 18 O -0.447 6.447 19 C 0.002 3.998 20 N -0.213 5.213 21 C -0.030 4.030 22 C -0.203 4.203 23 C -0.042 4.042 24 N -0.244 5.244 25 C -0.010 4.010 26 H 0.048 0.952 27 H 0.203 0.797 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.224 0.776 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.050 0.950 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.243 0.757 38 H 0.223 0.777 39 H 0.213 0.787 40 H 0.106 0.894 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.852 -17.860 9.874 20.492 hybrid contribution -0.181 1.882 0.010 1.891 sum -2.033 -15.979 9.883 18.898 Atomic orbital electron populations 1.69773 1.05747 1.24412 1.63137 1.25209 0.96148 0.99880 1.06803 0.85409 0.78319 0.82413 0.75945 1.20380 1.21933 1.23931 1.19678 0.91590 0.84494 1.34299 0.90065 1.42556 1.04777 1.00397 1.87204 1.20474 0.92010 0.87335 0.91969 1.22692 0.91016 0.88982 0.97529 1.86801 1.51322 1.51023 1.48949 1.21657 0.97119 0.97262 0.98512 1.21895 0.98371 1.02089 0.94365 1.22228 0.89019 0.91097 0.99282 1.47726 1.34483 1.31271 1.16689 1.17811 0.83498 0.80241 0.82313 1.90723 1.34323 1.40275 1.79340 1.22387 0.95660 0.85739 0.96009 1.68476 1.14216 1.27054 1.11521 1.24301 0.88479 1.01561 0.88613 1.23657 1.01147 0.92958 1.02588 1.24006 0.89783 1.01953 0.88453 1.68194 1.11461 1.30766 1.13992 1.22105 0.92805 1.01654 0.84395 0.95216 0.79748 0.91102 0.94319 0.77618 0.91054 0.87478 0.87256 0.94987 0.87871 0.89005 0.75653 0.77671 0.78678 0.89420 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.42 13.06 21.65 0.28 -64.13 16 2 C -0.09 -5.78 5.50 84.86 0.47 -5.32 16 3 Si 0.95 53.72 29.55 68.60 2.03 55.75 16 4 H -0.28 -15.51 7.11 99.48 0.71 -14.80 16 5 H -0.29 -16.00 7.11 99.48 0.71 -15.30 16 6 H -0.31 -18.15 7.11 99.48 0.71 -17.45 16 7 C -0.17 -10.04 8.21 84.03 0.69 -9.35 16 8 H 0.08 5.03 5.28 -2.91 -0.02 5.02 16 9 N -0.71 -36.23 4.75 -303.01 -1.44 -37.66 16 10 C 0.17 6.55 0.68 3.68 0.00 6.55 16 11 C 0.08 2.58 6.08 71.98 0.44 3.02 16 12 O -0.57 -22.19 10.10 -148.98 -1.51 -23.70 16 13 C -0.11 -2.96 4.77 30.64 0.15 -2.81 16 14 C -0.13 -3.62 5.91 30.69 0.18 -3.44 16 15 C 0.11 3.00 6.04 86.36 0.52 3.52 16 16 N -0.57 -22.37 2.89 -821.55 -2.37 -24.75 16 17 C 0.58 26.93 7.56 86.99 0.66 27.59 16 18 O -0.57 -32.14 16.53 -3.62 -0.06 -32.19 16 19 C 0.27 10.63 6.69 137.68 0.92 11.55 16 20 N -0.50 -13.89 7.62 -189.10 -1.44 -15.33 16 21 C 0.14 2.28 11.30 84.79 0.96 3.24 16 22 C -0.18 -2.76 10.18 22.54 0.23 -2.53 16 23 C 0.12 3.10 11.30 84.79 0.96 4.06 16 24 N -0.53 -21.03 10.34 -189.09 -1.96 -22.98 16 25 C 0.11 4.53 4.84 86.36 0.42 4.95 16 26 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.37 20.43 6.42 -92.70 -0.60 19.83 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.38 10.45 9.12 -74.06 -0.68 9.77 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.03 1.20 6.75 -2.39 -0.02 1.19 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.09 2.64 4.75 -2.39 -0.01 2.63 16 37 H 0.23 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.21 0.82 8.06 -2.91 -0.02 0.79 16 39 H 0.20 3.66 8.06 -2.91 -0.02 3.63 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.05 2.72 5.74 -2.38 -0.01 2.70 16 Total: -1.00 -95.82 332.76 -0.06 -95.88 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.18 Total: 28.09 kcal Atomic # 6 Polarization: 34.45 SS G_CDS: 6.59 Total: 41.04 kcal Atomic # 7 Polarization: -157.93 SS G_CDS: -6.93 Total: -164.86 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -1.57 Total: -55.89 kcal Atomic # 14 Polarization: 53.72 SS G_CDS: 2.03 Total: 55.75 kcal Total: -95.82 -0.06 -95.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673700051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.453 kcal (2) G-P(sol) polarization free energy of solvation -95.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds