Wall clock time and date at job start Fri Apr 10 2020 17:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48506 * 109.47131 * 270.00401 * 3 2 1 5 5 H 1.48501 * 109.47111 * 30.00179 * 3 2 1 6 6 H 1.48500 * 109.47193 * 150.00126 * 3 2 1 7 7 C 1.38807 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00464 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99886 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.49824 * 60.06322 * 10 9 7 12 12 O 1.42893 * 109.47193 * 304.93639 * 11 10 9 13 13 C 1.53037 * 109.52445 * 180.14310 * 10 9 7 14 14 C 1.53047 * 109.53923 * 58.60192 * 13 10 9 15 15 C 1.52761 * 109.37918 * 61.24138 * 14 13 10 16 16 N 1.46931 * 109.01064 * 305.58798 * 15 14 13 17 17 C 1.34773 * 120.63296 * 233.58909 * 16 15 14 18 18 O 1.21472 * 119.99898 * 183.90431 * 17 16 15 19 19 C 1.48535 * 120.00060 * 3.89687 * 17 16 15 20 20 N 1.32461 * 119.18608 * 135.38608 * 19 17 16 21 21 C 1.32109 * 120.76838 * 179.97438 * 20 19 17 22 22 C 1.38807 * 119.16511 * 0.02562 * 21 20 19 23 23 C 1.38799 * 118.50468 * 359.97438 * 22 21 20 24 24 N 1.32117 * 119.16491 * 359.97438 * 23 22 21 25 25 C 1.46931 * 118.73265 * 53.30847 * 16 15 14 26 26 H 0.96997 * 120.00177 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00263 * 359.97438 * 9 7 2 28 28 H 1.09009 * 109.46967 * 64.93190 * 11 10 9 29 29 H 1.08992 * 109.47335 * 184.93089 * 11 10 9 30 30 H 0.96703 * 113.99948 * 179.97438 * 12 11 10 31 31 H 1.08998 * 109.46554 * 178.62714 * 13 10 9 32 32 H 1.08997 * 109.46207 * 298.60166 * 13 10 9 33 33 H 1.08994 * 109.49860 * 181.31850 * 14 13 10 34 34 H 1.08999 * 109.49574 * 301.41982 * 14 13 10 35 35 H 1.08998 * 109.50840 * 185.71284 * 15 14 13 36 36 H 1.09001 * 109.43288 * 65.42357 * 15 14 13 37 37 H 1.08005 * 120.41558 * 179.97438 * 21 20 19 38 38 H 1.07992 * 120.74252 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.41287 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.58445 * 66.43530 * 25 16 15 41 41 H 1.09003 * 109.58179 * 186.71288 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 2.9379 -3.7396 1.2475 12 8 3.7879 -2.5926 1.3084 13 6 1.0649 -4.8209 -0.0050 14 6 0.1627 -4.7205 -1.2372 15 6 1.0177 -4.8102 -2.5001 16 7 2.0714 -3.7881 -2.4383 17 6 2.2361 -2.9097 -3.4471 18 8 3.1548 -2.1156 -3.4170 19 6 1.2943 -2.9128 -4.5957 20 7 0.8281 -1.7599 -5.0519 21 6 -0.0106 -1.7262 -6.0720 22 6 -0.4021 -2.9184 -6.6655 23 6 0.1063 -4.1075 -6.1615 24 7 0.9422 -4.0683 -5.1392 25 6 2.9382 -3.7380 -1.2529 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3881 0.0002 28 1 2.3062 -3.7712 2.1353 29 1 3.5477 -4.6419 1.2032 30 1 4.3745 -2.5782 2.0771 31 1 1.6107 -5.7640 -0.0305 32 1 0.4537 -4.7794 0.8965 33 1 -0.5596 -5.5366 -1.2267 34 1 -0.3648 -3.7667 -1.2251 35 1 0.3923 -4.6377 -3.3760 36 1 1.4713 -5.7994 -2.5614 37 1 -0.3875 -0.7830 -6.4391 38 1 -1.0868 -2.9205 -7.5006 39 1 -0.1780 -5.0528 -6.5995 40 1 3.5516 -4.6380 -1.2105 41 1 3.5814 -2.8597 -1.3076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673700052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:27 Heat of formation + Delta-G solvation = 9.560533 kcal Electronic energy + Delta-G solvation = -26764.375303 eV Core-core repulsion = 23067.130045 eV Total energy + Delta-G solvation = -3697.245258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20305 -39.48570 -37.59511 -35.72633 -34.05056 -33.52933 -32.39236 -31.91814 -30.99400 -28.55625 -26.37516 -25.28718 -24.52977 -24.03657 -23.40807 -21.63798 -20.28507 -18.43058 -17.74521 -17.38229 -17.05437 -16.27384 -16.11669 -15.76386 -15.10183 -14.94325 -14.58059 -14.15997 -13.98396 -13.78072 -13.66136 -13.36087 -13.20895 -12.97652 -12.64323 -12.18752 -12.00472 -11.57369 -11.34788 -11.09760 -10.91472 -10.67238 -10.60748 -10.55394 -10.29827 -10.12150 -9.76630 -9.65858 -9.44705 -9.36773 -9.22944 -8.91863 -8.72936 -8.03248 -6.73900 -5.49192 -2.74519 0.61643 1.04984 2.92399 3.16855 3.65318 3.72018 3.74125 3.77131 4.17258 4.36578 4.48601 4.81834 4.83605 4.88240 4.98143 5.13738 5.25578 5.31207 5.50678 5.53144 5.63176 5.66680 5.87080 5.89692 5.93000 5.98088 6.08551 6.13562 6.21440 6.24675 6.33515 6.42875 6.64139 6.82608 6.85187 6.92820 7.10811 7.81611 8.01219 8.24479 8.43958 8.63400 8.68672 9.82320 10.29337 10.64993 11.74483 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.006643 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.380019 B = 4213.832562 C = 5424.534407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.023 4.023 3 Si 0.902 3.098 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.283 1.283 7 C -0.197 4.197 8 H 0.092 0.908 9 N -0.702 5.702 10 C 0.187 3.813 11 C 0.076 3.924 12 O -0.535 6.535 13 C -0.115 4.115 14 C -0.135 4.135 15 C 0.108 3.892 16 N -0.572 5.572 17 C 0.595 3.405 18 O -0.503 6.503 19 C 0.305 3.695 20 N -0.466 5.466 21 C 0.148 3.852 22 C -0.221 4.221 23 C 0.138 3.862 24 N -0.495 5.495 25 C 0.111 3.889 26 H 0.248 0.752 27 H 0.381 0.619 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.351 0.649 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.173 0.827 38 H 0.150 0.850 39 H 0.172 0.828 40 H 0.051 0.949 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -14.484 -8.914 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.216 4.216 3 Si 0.734 3.266 4 H -0.220 1.220 5 H -0.226 1.226 6 H -0.209 1.209 7 C -0.328 4.328 8 H 0.110 0.890 9 N -0.342 5.342 10 C 0.094 3.906 11 C -0.005 4.005 12 O -0.338 6.338 13 C -0.153 4.153 14 C -0.173 4.173 15 C -0.015 4.015 16 N -0.304 5.304 17 C 0.377 3.623 18 O -0.375 6.375 19 C 0.035 3.965 20 N -0.180 5.180 21 C -0.019 4.019 22 C -0.243 4.243 23 C -0.029 4.029 24 N -0.212 5.212 25 C -0.013 4.013 26 H 0.057 0.943 27 H 0.216 0.784 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.196 0.804 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.190 0.810 38 H 0.168 0.832 39 H 0.190 0.810 40 H 0.069 0.931 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.767 -13.718 -8.654 16.238 hybrid contribution -0.505 0.801 -0.269 0.984 sum -1.272 -12.917 -8.923 15.751 Atomic orbital electron populations 1.69658 1.05017 1.24915 1.60096 1.24648 0.95345 0.97441 1.04159 0.86228 0.78625 0.84311 0.77395 1.21999 1.22556 1.20890 1.19507 0.91882 0.82975 1.38432 0.89032 1.42415 1.05174 0.99240 1.87405 1.19962 0.90986 0.88250 0.91445 1.22727 0.92065 0.86794 0.98930 1.86977 1.54665 1.43810 1.48328 1.21624 0.97744 0.97537 0.98354 1.21846 0.98003 1.02979 0.94513 1.21825 0.89728 0.90948 0.98979 1.47501 1.33820 1.31126 1.17991 1.17059 0.83545 0.80780 0.80872 1.90796 1.31675 1.37726 1.77300 1.23139 0.93866 0.84224 0.95309 1.68379 1.09076 1.29453 1.11133 1.23414 0.90178 0.99073 0.89196 1.23087 1.03110 0.95024 1.03118 1.23283 0.90356 0.98927 0.90302 1.68530 1.13203 1.29331 1.10175 1.22249 0.92708 1.02239 0.84077 0.94258 0.78427 0.94327 0.95789 0.80417 0.91867 0.91489 0.91429 0.90395 0.89188 0.91632 0.80952 0.83206 0.81049 0.93108 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.88 13.06 55.49 0.72 -29.16 16 2 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 3 Si 0.90 24.91 29.55 -169.99 -5.02 19.89 16 4 H -0.29 -8.31 7.11 56.52 0.40 -7.91 16 5 H -0.30 -8.20 7.11 56.52 0.40 -7.79 16 6 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.20 -5.66 8.07 -15.06 -0.12 -5.78 16 8 H 0.09 2.71 5.27 -52.49 -0.28 2.43 16 9 N -0.70 -17.47 4.75 -47.12 -0.22 -17.69 16 10 C 0.19 3.63 0.68 -131.70 -0.09 3.54 16 11 C 0.08 1.34 6.09 37.16 0.23 1.56 16 12 O -0.54 -10.54 10.05 -35.23 -0.35 -10.90 16 13 C -0.11 -1.76 4.76 -26.69 -0.13 -1.89 16 14 C -0.14 -2.06 5.90 -26.83 -0.16 -2.22 16 15 C 0.11 1.67 6.00 -3.93 -0.02 1.65 16 16 N -0.57 -11.14 2.90 -173.88 -0.50 -11.64 16 17 C 0.60 13.20 7.57 -12.01 -0.09 13.11 16 18 O -0.50 -13.11 16.52 5.39 0.09 -13.02 16 19 C 0.30 5.81 6.68 -157.08 -1.05 4.76 16 20 N -0.47 -8.93 10.34 -11.12 -0.11 -9.04 16 21 C 0.15 1.95 11.30 -17.22 -0.19 1.76 16 22 C -0.22 -2.13 10.18 -39.16 -0.40 -2.53 16 23 C 0.14 1.45 11.30 -17.22 -0.19 1.25 16 24 N -0.50 -7.38 7.62 -11.12 -0.08 -7.46 16 25 C 0.11 2.20 4.90 -3.71 -0.02 2.19 16 26 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.38 10.18 6.43 -40.82 -0.26 9.92 16 28 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.35 5.12 9.12 45.56 0.42 5.54 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.48 6.75 -51.93 -0.35 1.13 16 35 H 0.09 1.38 4.76 -51.93 -0.25 1.14 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.17 1.70 8.06 -52.48 -0.42 1.27 16 38 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 2.50 5.85 -51.93 -0.30 2.20 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -38.69 332.71 -7.20 -45.89 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.39 Total: 11.51 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: -2.34 Total: 16.61 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -0.20 Total: -75.00 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.27 Total: -23.92 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.02 Total: 19.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -38.69 -7.20 -45.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673700052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.449 kcal (2) G-P(sol) polarization free energy of solvation -38.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds