Wall clock time and date at job start Fri Apr 10 2020 17:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.88800 * 302.57941 * 11 10 9 13 13 C 1.55156 * 111.00983 * 178.64956 * 11 10 9 14 14 C 1.54317 * 102.94471 * 206.42770 * 13 11 10 15 15 N 1.47022 * 107.27514 * 22.19305 * 14 13 11 16 16 C 1.34769 * 125.65549 * 181.09709 * 15 14 13 17 17 O 1.21607 * 120.00425 * 179.97438 * 16 15 14 18 18 C 1.47396 * 119.99905 * 359.95517 * 16 15 14 19 19 C 1.38212 * 126.45800 * 0.03079 * 18 16 15 20 20 N 1.34263 * 108.39658 * 179.97438 * 19 18 16 21 21 H 0.97001 * 125.39486 * 179.97438 * 20 19 18 22 22 C 1.37788 * 109.21549 * 359.97438 * 20 19 18 23 23 C 1.46802 * 125.84971 * 180.02562 * 22 20 19 24 24 N 1.34778 * 120.00179 * 359.97438 * 23 22 20 25 25 O 1.21679 * 120.00227 * 179.97438 * 23 22 20 26 26 C 1.36351 * 108.29800 * 359.76899 * 22 20 19 27 27 C 1.47430 * 108.70052 * 1.05818 * 15 14 13 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 31 31 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 32 32 H 1.09004 * 110.71807 * 324.79353 * 13 11 10 33 33 H 1.09005 * 110.71781 * 88.06061 * 13 11 10 34 34 H 1.09000 * 109.88095 * 262.77886 * 14 13 11 35 35 H 1.09003 * 110.01129 * 141.68081 * 14 13 11 36 36 H 1.08001 * 125.80695 * 359.91667 * 19 18 16 37 37 H 0.97002 * 120.00013 * 359.97438 * 24 23 22 38 38 H 0.96999 * 120.00527 * 180.02562 * 24 23 22 39 39 H 1.07997 * 126.49432 * 180.26528 * 26 22 20 40 40 H 1.09000 * 110.37078 * 217.03403 * 27 15 14 41 41 H 1.09003 * 110.45837 * 94.75719 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3951 -4.7586 0.8595 13 6 1.8033 -6.1834 -0.0329 14 6 0.7719 -7.1192 -0.6977 15 7 -0.1563 -6.2731 -1.4620 16 6 -1.2160 -6.7106 -2.1705 17 8 -1.9187 -5.9168 -2.7664 18 6 -1.5231 -8.1512 -2.2234 19 6 -0.8191 -9.1645 -1.6007 20 7 -1.4131 -10.3332 -1.8903 21 1 -1.1206 -11.2043 -1.5796 22 6 -2.5041 -10.0993 -2.6988 23 6 -3.4143 -11.1206 -3.2313 24 7 -3.2146 -12.4206 -2.9372 25 8 -4.3490 -10.7935 -3.9383 26 6 -2.5967 -8.7562 -2.9148 27 6 0.2636 -4.8666 -1.3243 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3880 0.0005 30 1 2.6849 -3.7145 -0.8894 31 1 2.6848 -3.7144 0.8905 32 1 2.7085 -6.1164 -0.6365 33 1 2.0360 -6.5213 0.9770 34 1 0.2257 -7.6717 0.0668 35 1 1.2769 -7.8147 -1.3680 36 1 0.0601 -9.0379 -0.9864 37 1 -2.4692 -12.6815 -2.3739 38 1 -3.8158 -13.0955 -3.2893 39 1 -3.3472 -8.2507 -3.5044 40 1 -0.6078 -4.2146 -1.2645 41 1 0.8982 -4.5748 -2.1612 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752960770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:48 Heat of formation + Delta-G solvation = -6.485739 kcal Electronic energy + Delta-G solvation = -24211.364597 eV Core-core repulsion = 20513.423520 eV Total energy + Delta-G solvation = -3697.941077 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.95415 -39.79204 -39.07138 -37.39568 -34.67146 -34.28057 -32.40020 -31.54780 -30.44106 -30.03044 -28.49918 -25.69639 -24.09091 -23.57139 -22.29791 -21.72452 -20.59161 -20.02366 -19.77176 -18.61481 -17.34103 -17.02998 -16.79416 -16.22778 -15.74655 -15.59954 -15.08091 -14.67627 -14.42572 -14.19055 -14.03850 -13.75049 -13.60117 -13.39414 -13.15052 -12.78537 -12.59714 -12.45330 -12.00515 -11.68356 -11.27509 -10.84660 -10.72509 -10.62819 -10.58331 -10.42489 -10.28175 -10.01039 -9.81080 -9.65233 -9.44167 -8.85460 -8.75753 -8.48487 -6.90189 -5.72647 -3.02394 1.01474 1.64790 2.49164 2.89011 2.90626 3.18516 3.46406 3.51110 3.52760 3.53606 4.38619 4.43982 4.50718 4.59765 4.64080 4.79433 4.88402 4.99300 5.22239 5.34852 5.48434 5.59405 5.62588 5.65941 5.84855 5.95580 6.00149 6.04428 6.14076 6.21847 6.31552 6.35529 6.42310 6.53146 6.69328 6.69427 6.83585 6.86255 7.66713 7.72069 7.72427 8.37487 8.45459 9.56614 10.13644 10.47695 11.49918 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.034214 B = 0.002434 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.181087 B =11499.970009 C =12190.499884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.126 4.126 14 C 0.094 3.906 15 N -0.616 5.616 16 C 0.597 3.403 17 O -0.535 6.535 18 C -0.221 4.221 19 C 0.062 3.938 20 N -0.529 5.529 21 H 0.418 0.582 22 C -0.075 4.075 23 C 0.596 3.404 24 N -0.857 5.857 25 O -0.526 6.526 26 C -0.037 4.037 27 C 0.117 3.883 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.194 0.806 37 H 0.395 0.605 38 H 0.408 0.592 39 H 0.160 0.840 40 H 0.085 0.915 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -30.097 -0.326 30.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.165 4.165 14 C -0.029 4.029 15 N -0.350 5.350 16 C 0.387 3.613 17 O -0.412 6.412 18 C -0.230 4.230 19 C -0.079 4.079 20 N -0.125 5.125 21 H 0.256 0.744 22 C -0.185 4.185 23 C 0.382 3.618 24 N -0.421 5.421 25 O -0.401 6.401 26 C -0.063 4.063 27 C -0.004 4.004 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.210 0.790 37 H 0.222 0.778 38 H 0.240 0.760 39 H 0.178 0.822 40 H 0.103 0.897 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.283 -29.338 -1.155 29.362 hybrid contribution 0.564 0.022 0.438 0.715 sum 0.847 -29.316 -0.717 29.337 Atomic orbital electron populations 1.69664 1.05096 1.25722 1.57416 1.24762 0.95519 0.97736 1.02926 0.86191 0.78635 0.83906 0.77439 1.21770 1.20780 1.21763 1.19195 0.90983 0.84125 1.43020 0.91177 1.42370 1.05947 0.99920 1.89530 1.20581 0.92719 0.84858 0.98136 1.22591 0.97830 0.94666 0.97440 0.89693 1.22676 0.97762 0.94841 1.01188 1.22312 0.91409 0.94409 0.94751 1.48368 1.27637 1.09155 1.49813 1.16989 0.79281 0.86584 0.78463 1.90828 1.49119 1.56346 1.44906 1.19715 1.01478 0.92905 1.08949 1.23327 0.99517 0.83989 1.01077 1.41729 1.22735 1.09130 1.38863 0.74402 1.19965 0.95505 0.95371 1.07646 1.17028 0.83482 0.81704 0.79596 1.43699 1.34584 1.08053 1.55758 1.90925 1.30677 1.80992 1.37483 1.21168 0.97224 0.90462 0.97450 1.22318 0.99681 0.80935 0.97480 0.93439 0.78144 0.96041 0.95885 0.90162 0.89947 0.91377 0.91394 0.78978 0.77788 0.76004 0.82223 0.89700 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.37 5.45 -59.91 -0.33 -18.70 16 10 C 0.17 3.13 5.71 -4.04 -0.02 3.10 16 11 C -0.11 -1.58 3.11 -88.47 -0.27 -1.85 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 13 C -0.13 -1.26 6.42 -24.90 -0.16 -1.42 16 14 C 0.09 0.85 4.99 -3.07 -0.02 0.83 16 15 N -0.62 -8.60 3.33 -171.79 -0.57 -9.17 16 16 C 0.60 9.52 7.84 -12.54 -0.10 9.42 16 17 O -0.53 -11.04 17.17 5.27 0.09 -10.95 16 18 C -0.22 -2.67 6.11 -105.02 -0.64 -3.31 16 19 C 0.06 0.44 10.42 -16.50 -0.17 0.27 16 20 N -0.53 -2.76 5.91 -9.30 -0.05 -2.82 16 21 H 0.42 0.32 8.14 -40.82 -0.33 -0.01 16 22 C -0.07 -0.68 6.99 -82.41 -0.58 -1.26 16 23 C 0.60 5.51 8.06 -12.80 -0.10 5.41 16 24 N -0.86 -3.43 8.87 30.29 0.27 -3.17 16 25 O -0.53 -7.30 17.69 5.21 0.09 -7.21 16 26 C -0.04 -0.46 10.37 -39.10 -0.41 -0.86 16 27 C 0.12 1.95 6.08 -2.52 -0.02 1.94 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.38 10.27 7.53 -40.82 -0.31 9.96 16 30 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.47 6.85 -51.93 -0.36 0.11 16 35 H 0.07 0.45 7.00 -51.93 -0.36 0.08 16 36 H 0.19 0.78 4.38 -52.49 -0.23 0.55 16 37 H 0.39 0.20 7.91 -40.82 -0.32 -0.12 16 38 H 0.41 1.23 8.93 -40.82 -0.36 0.87 16 39 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 41 H 0.07 1.26 8.00 -51.93 -0.42 0.85 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -39.32 345.48 -7.51 -46.83 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.18 Total: 5.45 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -2.73 Total: 4.86 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.04 Total: -61.76 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.18 Total: -18.16 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -39.32 -7.51 -46.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752960770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.341 kcal (2) G-P(sol) polarization free energy of solvation -39.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds