Wall clock time and date at job start Fri Apr 10 2020 17:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 O 1.42892 * 114.38532 * 272.46261 * 11 10 9 13 13 C 1.52998 * 114.20555 * 139.65195 * 11 10 9 14 14 N 1.46502 * 109.47175 * 86.39798 * 13 11 10 15 15 C 1.34776 * 119.99871 * 179.97438 * 14 13 11 16 16 O 1.21617 * 120.00455 * 0.02562 * 15 14 13 17 17 C 1.47325 * 119.99914 * 180.02562 * 15 14 13 18 18 C 1.36287 * 126.23052 * 179.71741 * 17 15 14 19 19 N 1.35755 * 106.91916 * 179.89714 * 18 17 15 20 20 C 1.35669 * 107.69527 * 0.26087 * 19 18 17 21 21 N 1.30601 * 108.91366 * 359.94368 * 20 19 18 22 22 C 1.51601 * 109.82277 * 179.97438 * 20 19 18 23 23 C 1.54511 * 104.27712 * 16.62983 * 22 20 19 24 24 C 1.47075 * 141.30122 * 179.75141 * 19 18 17 25 25 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 26 26 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 28 28 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 29 29 H 0.96697 * 114.00185 * 273.68964 * 12 11 10 30 30 H 1.08998 * 109.47137 * 206.40214 * 13 11 10 31 31 H 1.09003 * 109.47029 * 326.40144 * 13 11 10 32 32 H 0.96999 * 119.99845 * 0.02562 * 14 13 11 33 33 H 1.07999 * 126.54142 * 0.05363 * 18 17 15 34 34 H 1.08999 * 110.47350 * 135.32753 * 22 20 19 35 35 H 1.09001 * 110.47649 * 257.80145 * 22 20 19 36 36 H 1.09004 * 110.94449 * 92.79294 * 23 22 20 37 37 H 1.08998 * 110.94319 * 216.48939 * 23 22 20 38 38 H 1.08998 * 110.23080 * 44.28982 * 24 19 18 39 39 H 1.09007 * 110.22967 * 282.34354 * 24 19 18 40 40 H 1.09000 * 113.47406 * 321.64878 * 25 9 7 41 41 H 1.09007 * 113.46638 * 92.08574 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 8 0.8639 -3.9846 -2.4357 13 6 -0.3110 -5.3255 -0.7233 14 7 -1.3866 -5.4781 -1.7062 15 6 -2.2418 -6.5157 -1.6137 16 8 -2.1210 -7.3250 -0.7140 17 6 -3.3230 -6.6695 -2.6025 18 6 -4.2506 -7.6675 -2.6332 19 7 -5.0549 -7.4268 -3.7000 20 6 -4.6091 -6.2978 -4.3061 21 7 -3.5728 -5.8468 -3.6514 22 6 -5.4762 -5.9835 -5.5092 23 6 -6.7497 -6.8312 -5.2929 24 6 -6.2210 -7.9788 -4.4061 25 6 1.6714 -3.8129 -0.0873 26 1 -0.4849 0.8400 0.0004 27 1 -0.6583 -2.9391 0.4349 28 1 -0.5359 -2.1366 -1.1891 29 1 0.1296 -4.1516 -3.0423 30 1 0.3349 -6.2030 -0.7522 31 1 -0.7412 -5.2237 0.2731 32 1 -1.4827 -4.8329 -2.4241 33 1 -4.3320 -8.4912 -1.9394 34 1 -5.7242 -4.9224 -5.5337 35 1 -4.9720 -6.2775 -6.4298 36 1 -7.5162 -6.2571 -4.7722 37 1 -7.1284 -7.2143 -6.2405 38 1 -6.9848 -8.2842 -3.6910 39 1 -5.9215 -8.8259 -5.0234 40 1 2.6488 -4.0489 -0.5082 41 1 1.5213 -4.2479 0.9009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754767046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:53 Heat of formation + Delta-G solvation = 55.085489 kcal Electronic energy + Delta-G solvation = -24592.942600 eV Core-core repulsion = 20897.671452 eV Total energy + Delta-G solvation = -3695.271148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.75945 -39.62741 -38.49737 -36.54934 -34.89524 -33.82293 -32.35054 -31.95237 -29.61176 -28.29390 -27.62841 -26.07098 -24.70957 -23.54554 -22.05455 -21.60904 -20.33213 -20.11640 -19.26996 -17.90627 -17.10580 -16.66495 -16.41476 -15.91285 -15.45303 -15.11316 -14.77766 -14.38595 -14.20027 -13.89914 -13.85101 -13.75835 -13.34076 -13.32483 -13.08860 -12.81686 -12.62014 -12.17899 -12.13626 -11.78405 -11.58363 -11.08860 -10.80232 -10.63861 -10.41799 -10.37784 -10.07106 -9.99557 -9.74640 -9.40785 -9.05752 -8.81711 -8.73417 -8.57882 -6.83169 -5.72428 -3.02444 1.45722 2.20030 2.25148 3.31342 3.43857 3.45431 3.49215 3.51398 3.57717 3.91306 4.09896 4.18525 4.50193 4.61001 4.62141 4.75368 4.86005 4.91617 5.08821 5.11814 5.23261 5.32779 5.35332 5.38433 5.40993 5.67578 5.84419 5.87730 6.11149 6.35362 6.41722 6.51313 6.57325 6.62344 6.68597 7.11777 7.18334 7.51813 7.55363 7.78750 8.01139 8.22270 8.39109 9.08764 9.75477 10.68475 11.46515 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002867 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.708156 B = 9765.195197 C =10598.869195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.213 4.213 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.144 3.856 11 C 0.057 3.943 12 O -0.524 6.524 13 C 0.108 3.892 14 N -0.709 5.709 15 C 0.606 3.394 16 O -0.548 6.548 17 C -0.051 4.051 18 C 0.052 3.948 19 N -0.481 5.481 20 C 0.188 3.812 21 N -0.446 5.446 22 C -0.041 4.041 23 C -0.130 4.130 24 C 0.102 3.898 25 C 0.134 3.866 26 H 0.253 0.747 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.363 0.637 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.186 0.814 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.521 -17.958 -12.458 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.341 4.341 8 H 0.100 0.900 9 N -0.325 5.325 10 C 0.018 3.982 11 C 0.014 3.986 12 O -0.328 6.328 13 C -0.017 4.017 14 N -0.361 5.361 15 C 0.392 3.608 16 O -0.426 6.426 17 C -0.180 4.180 18 C -0.086 4.086 19 N -0.165 5.165 20 C -0.076 4.076 21 N -0.166 5.166 22 C -0.080 4.080 23 C -0.168 4.168 24 C -0.020 4.020 25 C 0.007 3.993 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.209 0.791 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.242 0.758 33 H 0.203 0.797 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.388 -17.473 -11.612 26.018 hybrid contribution -0.708 0.333 -0.147 0.796 sum -16.096 -17.140 -11.759 26.289 Atomic orbital electron populations 1.69859 1.05039 1.25338 1.56426 1.24821 0.95689 0.97637 1.02380 0.86065 0.78597 0.83357 0.77529 1.21554 1.21778 1.20554 1.18925 0.90543 0.81428 1.43176 0.89995 1.45365 1.05960 0.99133 1.82000 1.22627 0.89046 0.89773 0.96788 1.23391 0.98276 0.93513 0.83387 1.86602 1.37904 1.93827 1.14426 1.21963 0.88147 0.98793 0.92765 1.45710 1.30735 1.27850 1.31756 1.16761 0.80022 0.81088 0.82908 1.90788 1.73510 1.43513 1.34752 1.20546 1.01479 0.96682 0.99319 1.22199 0.92570 1.02120 0.91712 1.46352 1.24888 1.23292 1.21923 1.24470 0.95861 0.88722 0.98564 1.70222 1.13561 1.27282 1.05565 1.20686 0.91951 1.02670 0.92706 1.22746 0.97616 0.95602 1.00817 1.22473 0.85904 0.97914 0.95661 1.22386 0.95531 0.87173 0.94237 0.93703 0.94416 0.91777 0.79053 0.90912 0.90061 0.75778 0.79685 0.88003 0.88297 0.89199 0.87824 0.88831 0.88885 0.93052 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.27 11.86 55.49 0.66 -27.61 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.91 29.56 -169.99 -5.02 17.89 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.21 -6.28 10.73 -15.06 -0.16 -6.44 16 8 H 0.08 2.32 7.84 -52.49 -0.41 1.91 16 9 N -0.60 -16.25 3.76 -184.76 -0.70 -16.95 16 10 C 0.14 3.52 6.64 -8.51 -0.06 3.46 16 11 C 0.06 1.13 1.73 -90.11 -0.16 0.98 16 12 O -0.52 -10.39 13.56 -35.23 -0.48 -10.86 16 13 C 0.11 1.82 5.42 -4.04 -0.02 1.80 16 14 N -0.71 -11.23 5.34 -61.41 -0.33 -11.56 16 15 C 0.61 9.94 7.81 -12.57 -0.10 9.84 16 16 O -0.55 -10.16 16.88 5.26 0.09 -10.07 16 17 C -0.05 -0.73 6.97 -83.20 -0.58 -1.31 16 18 C 0.05 0.59 11.75 -16.52 -0.19 0.40 16 19 N -0.48 -4.34 3.55 -112.00 -0.40 -4.74 16 20 C 0.19 1.97 8.58 -154.31 -1.32 0.65 16 21 N -0.45 -6.23 11.01 -6.96 -0.08 -6.31 16 22 C -0.04 -0.22 6.85 -26.65 -0.18 -0.40 16 23 C -0.13 -0.32 7.16 -25.22 -0.18 -0.50 16 24 C 0.10 0.40 7.78 -3.01 -0.02 0.38 16 25 C 0.13 2.92 8.11 -8.52 -0.07 2.85 16 26 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.04 0.94 7.93 -51.93 -0.41 0.53 16 28 H 0.06 1.72 7.63 -51.93 -0.40 1.33 16 29 H 0.36 5.75 7.20 45.56 0.33 6.08 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.41 7.89 -51.93 -0.41 1.00 16 32 H 0.41 6.12 6.66 -40.82 -0.27 5.84 16 33 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -38.39 346.63 -9.11 -47.49 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.93 Total: 6.13 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: -3.14 Total: 11.35 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -0.84 Total: -67.16 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.39 Total: -20.94 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.39 -9.11 -47.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754767046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.580 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds