Wall clock time and date at job start Fri Apr 10 2020 17:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 O 1.42892 * 114.38532 * 272.46261 * 11 10 9 13 13 C 1.52998 * 114.20555 * 139.65195 * 11 10 9 14 14 N 1.46502 * 109.47175 * 86.39798 * 13 11 10 15 15 C 1.34776 * 119.99871 * 179.97438 * 14 13 11 16 16 O 1.21617 * 120.00455 * 0.02562 * 15 14 13 17 17 C 1.47325 * 119.99914 * 180.02562 * 15 14 13 18 18 C 1.36287 * 126.23052 * 179.71741 * 17 15 14 19 19 N 1.35755 * 106.91916 * 179.89714 * 18 17 15 20 20 C 1.35669 * 107.69527 * 0.26087 * 19 18 17 21 21 N 1.30601 * 108.91366 * 359.94368 * 20 19 18 22 22 C 1.51601 * 109.82277 * 179.97438 * 20 19 18 23 23 C 1.54511 * 104.27712 * 16.62983 * 22 20 19 24 24 C 1.47075 * 141.30122 * 179.75141 * 19 18 17 25 25 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 26 26 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 28 28 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 29 29 H 0.96697 * 114.00185 * 273.68964 * 12 11 10 30 30 H 1.08998 * 109.47137 * 206.40214 * 13 11 10 31 31 H 1.09003 * 109.47029 * 326.40144 * 13 11 10 32 32 H 0.96999 * 119.99845 * 0.02562 * 14 13 11 33 33 H 1.07999 * 126.54142 * 0.05363 * 18 17 15 34 34 H 1.08999 * 110.47350 * 135.32753 * 22 20 19 35 35 H 1.09001 * 110.47649 * 257.80145 * 22 20 19 36 36 H 1.09004 * 110.94449 * 92.79294 * 23 22 20 37 37 H 1.08998 * 110.94319 * 216.48939 * 23 22 20 38 38 H 1.08998 * 110.23080 * 44.28982 * 24 19 18 39 39 H 1.09007 * 110.22967 * 282.34354 * 24 19 18 40 40 H 1.09000 * 113.47406 * 321.64878 * 25 9 7 41 41 H 1.09007 * 113.46638 * 92.08574 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 8 0.8639 -3.9846 -2.4357 13 6 -0.3110 -5.3255 -0.7233 14 7 -1.3866 -5.4781 -1.7062 15 6 -2.2418 -6.5157 -1.6137 16 8 -2.1210 -7.3250 -0.7140 17 6 -3.3230 -6.6695 -2.6025 18 6 -4.2506 -7.6675 -2.6332 19 7 -5.0549 -7.4268 -3.7000 20 6 -4.6091 -6.2978 -4.3061 21 7 -3.5728 -5.8468 -3.6514 22 6 -5.4762 -5.9835 -5.5092 23 6 -6.7497 -6.8312 -5.2929 24 6 -6.2210 -7.9788 -4.4061 25 6 1.6714 -3.8129 -0.0873 26 1 -0.4849 0.8400 0.0004 27 1 -0.6583 -2.9391 0.4349 28 1 -0.5359 -2.1366 -1.1891 29 1 0.1296 -4.1516 -3.0423 30 1 0.3349 -6.2030 -0.7522 31 1 -0.7412 -5.2237 0.2731 32 1 -1.4827 -4.8329 -2.4241 33 1 -4.3320 -8.4912 -1.9394 34 1 -5.7242 -4.9224 -5.5337 35 1 -4.9720 -6.2775 -6.4298 36 1 -7.5162 -6.2571 -4.7722 37 1 -7.1284 -7.2143 -6.2405 38 1 -6.9848 -8.2842 -3.6910 39 1 -5.9215 -8.8259 -5.0234 40 1 2.6488 -4.0489 -0.5082 41 1 1.5213 -4.2479 0.9009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754767046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:53 Heat of formation + Delta-G solvation = 24.676559 kcal Electronic energy + Delta-G solvation = -24594.261230 eV Core-core repulsion = 20897.671452 eV Total energy + Delta-G solvation = -3696.589778 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.51904 -41.13807 -39.99915 -37.13095 -36.60993 -35.24814 -34.09443 -33.02492 -30.79047 -29.73533 -28.16566 -27.75373 -26.58067 -24.74925 -23.42669 -22.40459 -21.37744 -21.02974 -20.98169 -19.13969 -18.60334 -17.73097 -17.35417 -17.20164 -17.02576 -16.43537 -16.32793 -15.81355 -15.50021 -15.16828 -15.00388 -14.84024 -14.56333 -14.35013 -14.14251 -13.93608 -13.90453 -13.49960 -13.31651 -13.06574 -12.80607 -12.56238 -12.46263 -12.22999 -11.92028 -11.81270 -11.48162 -11.34548 -11.08708 -10.93439 -10.73903 -10.71148 -10.20069 -9.48890 -8.97523 -7.94885 -5.26962 0.51036 1.32064 1.43961 1.47552 1.56130 1.59223 2.19552 2.45266 2.46079 2.78637 3.00343 3.28458 3.32037 3.45251 3.56471 3.63084 3.87298 3.97534 4.01477 4.19445 4.36498 4.40341 4.47922 4.59494 4.66668 4.72186 4.76677 4.90551 4.91731 4.95875 5.11237 5.11689 5.16764 5.22518 5.28671 5.43177 5.53284 5.86243 5.87974 6.37312 6.72824 6.84856 6.86732 7.14170 7.55614 8.55473 9.24168 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002867 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.708156 B = 9765.195197 C =10598.869195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.985 3.015 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.230 4.230 8 H 0.086 0.914 9 N -0.633 5.633 10 C 0.143 3.857 11 C 0.091 3.909 12 O -0.536 6.536 13 C 0.122 3.878 14 N -0.707 5.707 15 C 0.605 3.395 16 O -0.576 6.576 17 C -0.090 4.090 18 C 0.060 3.940 19 N -0.476 5.476 20 C 0.182 3.818 21 N -0.489 5.489 22 C -0.043 4.043 23 C -0.116 4.116 24 C 0.090 3.910 25 C 0.130 3.870 26 H 0.249 0.751 27 H 0.029 0.971 28 H 0.030 0.970 29 H 0.380 0.620 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.409 0.591 33 H 0.202 0.798 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.656 -19.364 -14.011 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.812 3.188 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.358 4.358 8 H 0.104 0.896 9 N -0.359 5.359 10 C 0.017 3.983 11 C 0.048 3.952 12 O -0.343 6.343 13 C -0.003 4.003 14 N -0.359 5.359 15 C 0.393 3.607 16 O -0.456 6.456 17 C -0.219 4.219 18 C -0.080 4.080 19 N -0.158 5.158 20 C -0.084 4.084 21 N -0.210 5.210 22 C -0.082 4.082 23 C -0.153 4.153 24 C -0.028 4.028 25 C 0.005 3.995 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.218 0.782 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.156 0.844 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.540 -18.918 -13.201 28.385 hybrid contribution -0.438 0.692 0.256 0.858 sum -16.977 -18.226 -12.945 28.071 Atomic orbital electron populations 1.70044 1.06600 1.25783 1.57808 1.25736 0.96642 1.01186 1.02628 0.84968 0.77831 0.78618 0.77345 1.21381 1.21850 1.18914 1.19343 0.91160 0.82848 1.42469 0.89606 1.45727 1.07157 1.00592 1.82416 1.22602 0.88121 0.91661 0.95957 1.22874 0.96746 0.92430 0.83123 1.86551 1.39213 1.93865 1.14627 1.21715 0.88284 0.97458 0.92813 1.45646 1.30599 1.28095 1.31557 1.17074 0.80207 0.80414 0.82963 1.90752 1.74411 1.44418 1.36037 1.20370 1.02518 0.98754 1.00236 1.22403 0.91967 1.01427 0.92238 1.46729 1.25362 1.22881 1.20800 1.25439 0.94939 0.88689 0.99288 1.70118 1.15846 1.28548 1.06445 1.20995 0.92492 1.03572 0.91169 1.22826 0.96014 0.94344 1.02149 1.22978 0.84581 0.99054 0.96209 1.22602 0.96567 0.84515 0.95861 0.94213 0.95362 0.95159 0.77059 0.89459 0.90389 0.75455 0.78153 0.87784 0.86671 0.88830 0.84375 0.87117 0.86771 0.92393 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 11.86 21.65 0.26 -60.07 16 2 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 3 Si 0.98 47.73 29.56 68.60 2.03 49.75 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.23 -13.73 10.73 84.04 0.90 -12.83 16 8 H 0.09 4.88 7.84 -2.91 -0.02 4.86 16 9 N -0.63 -34.90 3.76 -738.95 -2.78 -37.68 16 10 C 0.14 7.21 6.64 83.18 0.55 7.76 16 11 C 0.09 3.62 1.73 -10.46 -0.02 3.60 16 12 O -0.54 -21.18 13.56 -148.98 -2.02 -23.20 16 13 C 0.12 4.10 5.42 86.38 0.47 4.57 16 14 N -0.71 -22.75 5.34 -466.47 -2.49 -25.24 16 15 C 0.61 20.21 7.81 86.63 0.68 20.89 16 16 O -0.58 -21.59 16.88 -4.08 -0.07 -21.66 16 17 C -0.09 -2.64 6.97 40.49 0.28 -2.35 16 18 C 0.06 1.33 11.75 83.63 0.98 2.32 16 19 N -0.48 -7.69 3.55 -508.27 -1.80 -9.50 16 20 C 0.18 3.60 8.58 138.19 1.18 4.79 16 21 N -0.49 -13.78 11.01 -175.94 -1.94 -15.72 16 22 C -0.04 -0.36 6.85 30.65 0.21 -0.15 16 23 C -0.12 -0.12 7.16 31.57 0.23 0.11 16 24 C 0.09 0.40 7.78 86.74 0.67 1.08 16 25 C 0.13 5.65 8.11 83.18 0.67 6.32 16 26 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.03 1.47 7.93 -2.39 -0.02 1.45 16 28 H 0.03 1.70 7.63 -2.39 -0.02 1.68 16 29 H 0.38 12.05 7.20 -74.06 -0.53 11.52 16 30 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.08 2.70 7.89 -2.39 -0.02 2.69 16 32 H 0.41 12.66 6.66 -92.71 -0.62 12.04 16 33 H 0.20 3.61 8.06 -2.91 -0.02 3.58 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.14 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 40 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.07 2.81 8.10 -2.38 -0.02 2.79 16 Total: -1.00 -85.84 346.63 -1.61 -87.45 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.08 Total: 23.44 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 7.28 Total: 32.43 kcal Atomic # 7 Polarization: -139.45 SS G_CDS: -8.76 Total: -148.21 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -2.09 Total: -44.87 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -85.84 -1.61 -87.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754767046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.127 kcal (2) G-P(sol) polarization free energy of solvation -85.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds