Wall clock time and date at job start Fri Apr 10 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00095 * 2 1 4 4 H 1.48503 * 109.47005 * 272.43271 * 3 2 1 5 5 H 1.48499 * 109.46934 * 32.43098 * 3 2 1 6 6 H 1.48499 * 109.47164 * 152.43246 * 3 2 1 7 7 C 1.38819 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00218 * 341.54864 * 7 2 1 9 9 N 1.36938 * 119.99512 * 161.55038 * 7 2 1 10 10 C 1.46923 * 120.63376 * 328.97680 * 9 7 2 11 11 C 1.53191 * 108.77903 * 233.88981 * 10 9 7 12 12 C 1.53043 * 109.31052 * 305.36126 * 11 10 9 13 13 C 1.53041 * 109.53434 * 61.36738 * 12 11 10 14 14 C 1.53004 * 109.52487 * 178.66361 * 13 12 11 15 15 O 1.42897 * 109.47248 * 182.23383 * 14 13 12 16 16 N 1.46502 * 109.49769 * 58.58728 * 13 12 11 17 17 C 1.34772 * 120.00295 * 62.68448 * 16 13 12 18 18 O 1.21508 * 119.99839 * 354.65127 * 17 16 13 19 19 C 1.48158 * 120.00081 * 174.64567 * 17 16 13 20 20 C 1.39716 * 120.18117 * 179.97438 * 19 17 16 21 21 C 1.38826 * 117.89582 * 180.02562 * 20 19 17 22 22 C 1.38575 * 118.06936 * 0.02562 * 21 20 19 23 23 N 1.32165 * 120.06406 * 359.97438 * 22 21 20 24 24 N 1.28355 * 122.30670 * 359.70962 * 23 22 21 25 25 C 1.46924 * 120.62894 * 149.26719 * 9 7 2 26 26 H 0.97005 * 120.00273 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58804 * 353.67816 * 10 9 7 28 28 H 1.08999 * 109.58793 * 114.09642 * 10 9 7 29 29 H 1.09001 * 109.49368 * 185.41319 * 11 10 9 30 30 H 1.08993 * 109.49725 * 65.31560 * 11 10 9 31 31 H 1.08997 * 109.46525 * 301.34803 * 12 11 10 32 32 H 1.09000 * 109.45838 * 181.38469 * 12 11 10 33 33 H 1.09003 * 109.46828 * 302.23793 * 14 13 12 34 34 H 1.08998 * 109.46649 * 62.23142 * 14 13 12 35 35 H 0.96698 * 114.00023 * 179.97438 * 15 14 13 36 36 H 0.97006 * 119.99733 * 242.68802 * 16 13 12 37 37 H 1.08003 * 121.05375 * 359.97438 * 20 19 17 38 38 H 1.08004 * 120.96590 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.96369 * 180.02562 * 22 21 20 40 40 H 1.09007 * 109.58556 * 245.90012 * 25 9 7 41 41 H 1.09006 * 109.58771 * 6.17797 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4462 2.0761 -1.3989 5 1 1.4743 2.6372 0.7508 6 1 3.5725 1.4258 0.6479 7 6 2.0102 -1.2022 0.0005 8 1 1.5119 -2.1133 0.2969 9 7 3.3268 -1.2328 -0.3748 10 6 3.8438 -0.2835 -1.3698 11 6 4.5326 -1.0695 -2.4899 12 6 5.5973 -1.9867 -1.8838 13 6 4.9321 -2.9839 -0.9323 14 6 5.9923 -3.9222 -0.3520 15 8 5.3633 -4.8855 0.4955 16 7 3.9341 -3.7674 -1.6648 17 6 4.3169 -4.5639 -2.6823 18 8 5.4732 -4.5591 -3.0557 19 6 3.3279 -5.4454 -3.3455 20 6 3.7205 -6.2722 -4.4011 21 6 2.7549 -7.0784 -4.9885 22 6 1.4622 -7.0138 -4.4933 23 7 1.1774 -6.2021 -3.4899 24 7 2.0646 -5.4575 -2.9368 25 6 4.2478 -2.2197 0.2053 26 1 -0.4851 0.8401 -0.0004 27 1 3.0194 0.2967 -1.7843 28 1 4.5629 0.3857 -0.8974 29 1 5.0039 -0.3747 -3.1851 30 1 3.7938 -1.6704 -3.0201 31 1 6.3221 -1.3873 -1.3329 32 1 6.1058 -2.5290 -2.6808 33 1 6.5079 -4.4345 -1.1644 34 1 6.7118 -3.3433 0.2271 35 1 5.9768 -5.5149 0.8986 36 1 2.9978 -3.7128 -1.4173 37 1 4.7426 -6.2833 -4.7497 38 1 3.0039 -7.7368 -5.8076 39 1 0.6870 -7.6280 -4.9271 40 1 5.0000 -1.7085 0.8063 41 1 3.6903 -2.9155 0.8323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754858449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:57 Heat of formation + Delta-G solvation = -19.502020 kcal Electronic energy + Delta-G solvation = -26423.612699 eV Core-core repulsion = 22725.107194 eV Total energy + Delta-G solvation = -3698.505505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.26010 -41.24878 -39.09008 -37.48968 -35.60079 -34.41527 -34.10827 -33.58034 -32.66197 -31.49738 -27.45364 -26.78895 -26.49450 -25.57506 -23.82889 -23.11737 -22.27864 -20.32525 -19.38112 -18.75059 -18.27646 -18.20747 -17.64164 -17.22057 -16.80179 -16.59592 -16.16450 -15.65567 -15.60008 -15.28798 -15.08895 -14.93638 -14.63335 -14.41676 -14.13599 -14.01218 -13.73736 -13.33431 -13.28294 -12.95234 -12.55276 -12.50404 -12.19794 -11.99687 -11.68382 -11.48220 -11.39709 -11.30581 -11.24426 -11.10561 -10.79647 -10.76091 -10.53101 -9.95719 -8.88189 -8.13498 -5.50556 -0.53977 -0.22396 1.31990 1.42281 1.52025 1.63994 2.02511 2.44022 2.63902 2.84640 3.07410 3.23865 3.34843 3.46572 3.63097 3.78063 3.91004 3.95408 3.98867 4.15389 4.18055 4.22372 4.38078 4.55606 4.60757 4.73561 4.74502 4.75472 4.80761 4.89323 4.97439 4.99369 5.08607 5.18591 5.22676 5.35745 5.57888 5.90552 6.16040 6.49746 6.90285 6.94794 7.05081 7.55499 7.61863 8.02451 9.06168 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.005417 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.307619 B = 5167.220238 C = 6114.654720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.031 4.031 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.313 1.313 6 H -0.255 1.255 7 C -0.245 4.245 8 H 0.047 0.953 9 N -0.613 5.613 10 C 0.120 3.880 11 C -0.122 4.122 12 C -0.114 4.114 13 C 0.159 3.841 14 C 0.074 3.926 15 O -0.583 6.583 16 N -0.673 5.673 17 C 0.575 3.425 18 O -0.551 6.551 19 C 0.004 3.996 20 C -0.075 4.075 21 C -0.098 4.098 22 C 0.054 3.946 23 N -0.284 5.284 24 N -0.247 5.247 25 C 0.152 3.848 26 H 0.260 0.740 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.393 0.607 36 H 0.407 0.593 37 H 0.178 0.822 38 H 0.211 0.789 39 H 0.219 0.781 40 H 0.058 0.942 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.219 -14.302 -10.288 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.226 4.226 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.242 1.242 6 H -0.179 1.179 7 C -0.375 4.375 8 H 0.065 0.935 9 N -0.337 5.337 10 C -0.005 4.005 11 C -0.161 4.161 12 C -0.153 4.153 13 C 0.072 3.928 14 C -0.005 4.005 15 O -0.391 6.391 16 N -0.321 5.321 17 C 0.359 3.641 18 O -0.430 6.430 19 C -0.143 4.143 20 C -0.104 4.104 21 C -0.126 4.126 22 C -0.109 4.109 23 N -0.126 5.126 24 N -0.092 5.092 25 C 0.026 3.974 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.242 0.758 36 H 0.242 0.758 37 H 0.196 0.804 38 H 0.227 0.773 39 H 0.235 0.765 40 H 0.076 0.924 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.243 -13.255 -9.591 21.049 hybrid contribution 0.549 0.215 -0.384 0.703 sum 13.792 -13.040 -9.975 21.442 Atomic orbital electron populations 1.69974 1.07553 1.27102 1.55655 1.25974 0.95770 1.01074 0.99798 0.85841 0.78896 0.79943 0.77422 1.20450 1.24214 1.17928 1.18749 0.85528 0.93089 1.40089 0.93497 1.44376 1.06272 1.37965 1.45131 1.21446 0.96652 0.92281 0.90090 1.21828 0.97835 0.98685 0.97775 1.21757 0.97663 0.96452 0.99380 1.21130 0.88531 0.90601 0.92577 1.22497 0.93682 0.90684 0.93619 1.86509 1.39650 1.46982 1.65937 1.45838 1.12125 1.42151 1.31970 1.17744 0.86736 0.79723 0.79896 1.90641 1.18299 1.68949 1.65144 1.23016 0.93911 0.99275 0.98083 1.22721 1.03658 0.91909 0.92061 1.23012 0.91842 0.97562 1.00220 1.25293 0.98943 0.94775 0.91930 1.73113 1.26228 1.03993 1.09218 1.73285 0.99627 1.14178 1.22151 1.21205 0.92796 0.90646 0.92717 0.93082 0.93576 0.94044 0.89966 0.94180 0.89257 0.89877 0.91795 0.90565 0.75786 0.75761 0.80422 0.77257 0.76491 0.92444 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.54 13.97 21.65 0.30 -61.23 16 2 C -0.03 -1.86 5.24 84.86 0.44 -1.41 16 3 Si 0.95 47.12 24.37 68.60 1.67 48.79 16 4 H -0.28 -13.12 6.67 99.48 0.66 -12.46 16 5 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 6 H -0.26 -11.87 6.64 99.48 0.66 -11.21 16 7 C -0.24 -14.06 10.01 84.03 0.84 -13.22 16 8 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 9 N -0.61 -28.74 2.59 -699.10 -1.81 -30.55 16 10 C 0.12 5.08 4.20 86.36 0.36 5.44 16 11 C -0.12 -4.31 5.93 30.67 0.18 -4.12 16 12 C -0.11 -3.50 4.52 30.62 0.14 -3.36 16 13 C 0.16 5.28 0.45 3.68 0.00 5.28 16 14 C 0.07 2.00 5.66 71.98 0.41 2.40 16 15 O -0.58 -16.13 13.02 -148.98 -1.94 -18.07 16 16 N -0.67 -24.68 3.99 -425.12 -1.70 -26.37 16 17 C 0.58 19.38 7.22 86.88 0.63 20.00 16 18 O -0.55 -18.17 12.67 -3.74 -0.05 -18.21 16 19 C 0.00 0.14 6.83 42.00 0.29 0.42 16 20 C -0.07 -1.54 9.73 22.77 0.22 -1.32 16 21 C -0.10 -1.30 10.20 22.49 0.23 -1.07 16 22 C 0.05 0.96 11.31 84.72 0.96 1.92 16 23 N -0.28 -8.70 11.51 -57.15 -0.66 -9.36 16 24 N -0.25 -8.77 10.76 -48.49 -0.52 -9.30 16 25 C 0.15 5.95 5.03 86.36 0.43 6.38 16 26 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 27 H 0.05 2.19 4.80 -2.39 -0.01 2.18 16 28 H 0.04 1.64 7.02 -2.39 -0.02 1.62 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.04 1.59 7.53 -2.39 -0.02 1.57 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.08 2.52 6.23 -2.39 -0.01 2.50 16 33 H 0.06 1.75 6.24 -2.39 -0.01 1.74 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.39 6.75 9.12 -74.06 -0.68 6.07 16 36 H 0.41 17.43 7.80 -92.70 -0.72 16.70 16 37 H 0.18 2.92 7.72 -2.91 -0.02 2.90 16 38 H 0.21 0.47 8.06 -2.91 -0.02 0.44 16 39 H 0.22 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.06 2.50 7.71 -2.38 -0.02 2.48 16 Total: -1.00 -79.28 328.85 0.04 -79.24 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.40 Total: 27.71 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 5.14 Total: 17.35 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -4.38 Total: -136.81 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.99 Total: -36.28 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.67 Total: 48.79 kcal Total: -79.28 0.04 -79.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754858449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.741 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds