Wall clock time and date at job start Fri Apr 10 2020 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99705 * 2 1 4 4 H 1.48503 * 109.46984 * 269.99789 * 3 2 1 5 5 H 1.48496 * 109.47459 * 29.99695 * 3 2 1 6 6 H 1.48502 * 109.47383 * 150.00229 * 3 2 1 7 7 C 1.38809 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99857 * 173.77155 * 9 7 2 11 11 C 1.53004 * 112.84585 * 294.86636 * 10 9 7 12 12 N 1.46500 * 109.46943 * 292.10199 * 11 10 9 13 13 C 1.34778 * 119.99493 * 180.19581 * 12 11 10 14 14 O 1.21675 * 120.00341 * 359.97438 * 13 12 11 15 15 C 1.46810 * 119.99672 * 179.97438 * 13 12 11 16 16 C 1.36350 * 125.85125 * 180.02562 * 15 13 12 17 17 C 1.41301 * 107.01627 * 180.02562 * 16 15 13 18 18 C 1.47394 * 126.46445 * 179.97438 * 17 16 15 19 19 N 1.34781 * 119.99820 * 179.97438 * 18 17 16 20 20 O 1.21600 * 120.00124 * 359.97438 * 18 17 16 21 21 C 1.38209 * 107.07313 * 359.97438 * 17 16 15 22 22 N 1.34267 * 108.39399 * 359.73338 * 21 17 16 23 23 H 0.97000 * 125.38816 * 180.25895 * 22 21 17 24 24 C 1.53773 * 113.69254 * 66.13307 * 10 9 7 25 25 C 1.53776 * 87.08035 * 89.12535 * 24 10 9 26 26 C 1.53774 * 87.08257 * 25.43268 * 25 24 10 27 27 H 0.96996 * 120.00136 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00316 * 353.77058 * 9 7 2 29 29 H 1.08998 * 109.46808 * 172.10452 * 11 10 9 30 30 H 1.08999 * 109.47039 * 52.10522 * 11 10 9 31 31 H 0.97000 * 120.00552 * 0.19612 * 12 11 10 32 32 H 1.08005 * 126.49548 * 0.02562 * 16 15 13 33 33 H 0.96996 * 119.99909 * 0.02562 * 19 18 17 34 34 H 0.96997 * 119.99732 * 179.97438 * 19 18 17 35 35 H 1.08000 * 125.80450 * 180.02562 * 21 17 16 36 36 H 1.09000 * 113.62062 * 203.67640 * 24 10 9 37 37 H 1.09009 * 113.61931 * 334.57937 * 24 10 9 38 38 H 1.09006 * 113.61833 * 270.88345 * 25 24 10 39 39 H 1.09009 * 113.61257 * 139.98264 * 25 24 10 40 40 H 1.09001 * 113.61852 * 220.01479 * 26 25 24 41 41 H 1.09002 * 113.61653 * 89.11259 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0517 -3.6531 -0.1355 11 6 2.7373 -3.8002 -1.4954 12 7 1.7215 -3.9347 -2.5424 13 6 2.0953 -4.0816 -3.8289 14 8 3.2763 -4.1021 -4.1209 15 6 1.0773 -4.2169 -4.8781 16 6 1.3199 -4.3714 -6.2110 17 6 0.0639 -4.4607 -6.8522 18 6 -0.1717 -4.6330 -8.2969 19 7 -1.4317 -4.7031 -8.7705 20 8 0.7705 -4.7118 -9.0615 21 6 -0.9019 -4.3560 -5.8692 22 7 -0.2867 -4.2159 -4.6840 23 1 -0.7322 -4.1251 -3.8271 24 6 2.9713 -3.9700 1.0555 25 6 1.7641 -4.6714 1.7000 26 6 1.2268 -4.8843 0.2750 27 1 -0.4850 0.8400 -0.0004 28 1 0.3600 -2.3905 0.0931 29 1 3.3715 -4.6867 -1.4885 30 1 3.3473 -2.9185 -1.6920 31 1 0.7799 -3.9180 -2.3098 32 1 2.2885 -4.4168 -6.6866 33 1 -2.1832 -4.6399 -8.1607 34 1 -1.5867 -4.8162 -9.7213 35 1 -1.9699 -4.3868 -6.0269 36 1 3.7888 -4.6471 0.8080 37 1 3.3032 -3.0850 1.5986 38 1 1.1457 -4.0084 2.3052 39 1 2.0204 -5.5983 2.2131 40 1 0.1502 -4.7376 0.1877 41 1 1.5673 -5.8115 -0.1861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754990182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:59 Heat of formation + Delta-G solvation = -1.305300 kcal Electronic energy + Delta-G solvation = -24757.965414 eV Core-core repulsion = 21060.248978 eV Total energy + Delta-G solvation = -3697.716436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62590 -39.47398 -38.89523 -38.18160 -34.10902 -33.79828 -33.35961 -31.34603 -30.23826 -29.65919 -27.21274 -25.39580 -24.06640 -23.47926 -22.76689 -21.49016 -20.22651 -19.66460 -19.16649 -18.16955 -17.25542 -17.05639 -16.39808 -15.82454 -15.65248 -15.36718 -15.06460 -14.57445 -14.43768 -14.11613 -13.90682 -13.73168 -13.50859 -13.29769 -13.17645 -12.72195 -12.45885 -12.12886 -11.86089 -11.33601 -11.08064 -10.91884 -10.44221 -10.31193 -10.22420 -10.20346 -9.87809 -9.83223 -9.79144 -9.57467 -9.22899 -8.97214 -8.75849 -8.38957 -7.14156 -5.91961 -3.21805 1.38648 1.77992 2.84442 3.30529 3.36551 3.37216 3.43565 3.44338 3.59183 3.64198 4.46851 4.62593 4.77847 4.93988 5.07891 5.10772 5.17389 5.20805 5.34618 5.43509 5.68287 5.71487 5.88306 5.94537 6.02236 6.10179 6.21878 6.29409 6.34390 6.45238 6.58151 6.62284 6.65592 6.78091 6.86742 6.95361 7.06629 7.24399 7.62616 7.80041 8.22370 8.26933 8.44100 9.38700 9.90600 10.25869 11.30070 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.003668 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.399937 B = 7631.462228 C = 8605.867287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.700 5.700 10 C 0.173 3.827 11 C 0.120 3.880 12 N -0.703 5.703 13 C 0.582 3.418 14 O -0.535 6.535 15 C -0.046 4.046 16 C -0.051 4.051 17 C -0.242 4.242 18 C 0.596 3.404 19 N -0.857 5.857 20 O -0.547 6.547 21 C 0.069 3.931 22 N -0.519 5.519 23 H 0.424 0.576 24 C -0.150 4.150 25 C -0.128 4.128 26 C -0.145 4.145 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.393 0.607 32 H 0.158 0.842 33 H 0.398 0.602 34 H 0.402 0.598 35 H 0.179 0.821 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 -12.349 -7.137 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.006 4.006 12 N -0.352 5.352 13 C 0.368 3.632 14 O -0.412 6.412 15 C -0.158 4.158 16 C -0.077 4.077 17 C -0.252 4.252 18 C 0.383 3.617 19 N -0.420 5.420 20 O -0.424 6.424 21 C -0.074 4.074 22 N -0.113 5.113 23 H 0.263 0.737 24 C -0.190 4.190 25 C -0.165 4.165 26 C -0.183 4.183 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.227 0.773 32 H 0.175 0.825 33 H 0.226 0.774 34 H 0.233 0.767 35 H 0.196 0.804 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.510 -12.199 -7.471 15.330 hybrid contribution -1.175 1.169 0.474 1.724 sum -6.685 -11.030 -6.997 14.673 Atomic orbital electron populations 1.69638 1.05111 1.25822 1.57446 1.24710 0.95480 0.97682 1.02447 0.86226 0.78809 0.83738 0.77662 1.21612 1.21788 1.20608 1.19111 0.91150 0.83567 1.42957 0.91042 1.42059 1.06039 0.99071 1.86865 1.20832 0.93107 0.87395 0.90703 1.21927 0.90332 1.00964 0.87348 1.45645 1.10627 1.72803 1.06125 1.17027 0.87301 0.77309 0.81603 1.90830 1.16812 1.51576 1.81966 1.20326 0.82152 1.17365 0.95938 1.21051 0.98205 0.98060 0.90382 1.19538 0.93927 1.19202 0.92542 1.17411 0.82637 0.74744 0.86925 1.43680 1.07663 1.78257 1.12441 1.90820 1.42309 1.50584 1.58722 1.22353 0.98216 1.02609 0.84204 1.41818 1.06407 1.53641 1.09438 0.73738 1.23307 0.96385 1.00457 0.98900 1.22628 0.98523 0.99597 0.95800 1.23156 0.99699 0.97880 0.97595 0.93488 0.78034 0.92369 0.90934 0.77334 0.82486 0.77423 0.76741 0.80371 0.91193 0.90632 0.90021 0.92657 0.91828 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.05 13.07 55.49 0.73 -25.33 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.90 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.02 9.05 -15.06 -0.14 -6.16 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.70 -15.20 5.19 -46.48 -0.24 -15.44 16 10 C 0.17 2.98 0.80 -131.01 -0.11 2.87 16 11 C 0.12 2.10 5.08 -4.04 -0.02 2.08 16 12 N -0.70 -11.18 5.42 -61.58 -0.33 -11.52 16 13 C 0.58 9.97 7.79 -12.79 -0.10 9.87 16 14 O -0.53 -11.07 16.86 5.21 0.09 -10.98 16 15 C -0.05 -0.66 6.99 -82.41 -0.58 -1.23 16 16 C -0.05 -0.76 10.37 -39.10 -0.41 -1.17 16 17 C -0.24 -2.90 6.13 -105.02 -0.64 -3.54 16 18 C 0.60 7.27 8.09 -12.53 -0.10 7.17 16 19 N -0.86 -5.94 8.86 30.42 0.27 -5.67 16 20 O -0.55 -9.17 17.75 5.28 0.09 -9.08 16 21 C 0.07 0.58 11.43 -16.50 -0.19 0.39 16 22 N -0.52 -5.17 5.91 -9.30 -0.05 -5.22 16 23 H 0.42 3.24 8.14 -40.82 -0.33 2.91 16 24 C -0.15 -2.43 7.28 -25.93 -0.19 -2.62 16 25 C -0.13 -1.86 7.99 -25.93 -0.21 -2.07 16 26 C -0.15 -2.03 7.04 -25.92 -0.18 -2.22 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.39 8.86 7.87 -40.82 -0.32 8.54 16 29 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 30 H 0.07 1.51 7.80 -51.93 -0.41 1.10 16 31 H 0.39 5.49 7.38 -40.82 -0.30 5.19 16 32 H 0.16 2.49 8.06 -52.48 -0.42 2.07 16 33 H 0.40 1.41 7.74 -40.82 -0.32 1.09 16 34 H 0.40 2.31 8.93 -40.82 -0.36 1.95 16 35 H 0.18 0.61 7.44 -52.49 -0.39 0.22 16 36 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 37 H 0.07 1.39 7.87 -51.92 -0.41 0.98 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -34.80 353.33 -7.43 -42.23 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -5.33 Total: 15.86 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.95 Total: 3.10 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.37 Total: -63.18 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.18 Total: -20.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.80 -7.43 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754990182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.923 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds