Wall clock time and date at job start Fri Apr 10 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48501 * 109.47159 * 270.00090 * 3 2 1 5 5 H 1.48506 * 109.47067 * 29.99829 * 3 2 1 6 6 H 1.48500 * 109.47251 * 149.99660 * 3 2 1 7 7 C 1.38812 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00198 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47402 * 179.97438 * 10 9 7 12 12 C 1.53782 * 113.61734 * 185.00278 * 11 10 9 13 13 C 1.53781 * 87.08260 * 220.02231 * 12 11 10 14 14 N 1.46497 * 113.61305 * 270.79919 * 13 12 11 15 15 C 1.34780 * 119.99653 * 203.46742 * 14 13 12 16 16 O 1.21673 * 120.00492 * 0.02562 * 15 14 13 17 17 C 1.46815 * 119.99587 * 180.02562 * 15 14 13 18 18 C 1.36346 * 125.84854 * 180.02562 * 17 15 14 19 19 C 1.41300 * 107.01388 * 179.97438 * 18 17 15 20 20 C 1.47396 * 126.46338 * 180.02562 * 19 18 17 21 21 N 1.34779 * 119.99607 * 179.97438 * 20 19 18 22 22 O 1.21608 * 119.99956 * 0.02562 * 20 19 18 23 23 C 1.38207 * 107.07310 * 359.97438 * 19 18 17 24 24 N 1.34255 * 108.39643 * 359.76809 * 23 19 18 25 25 H 0.97002 * 125.39222 * 180.22590 * 24 23 19 26 26 C 1.53786 * 87.17350 * 25.39213 * 13 12 11 27 27 H 0.97001 * 120.00336 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99671 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46421 * 60.00512 * 10 9 7 30 30 H 1.08998 * 109.47294 * 300.00559 * 10 9 7 31 31 H 1.09002 * 112.84929 * 316.20353 * 11 10 9 32 32 H 1.09001 * 113.61250 * 105.47049 * 12 11 10 33 33 H 1.08997 * 113.61225 * 334.56890 * 12 11 10 34 34 H 1.09002 * 113.61445 * 139.98212 * 13 12 11 35 35 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 36 36 H 1.08005 * 126.49710 * 359.93662 * 18 17 15 37 37 H 0.96993 * 120.00494 * 0.02562 * 21 20 19 38 38 H 0.97005 * 119.99116 * 179.97438 * 21 20 19 39 39 H 1.08003 * 125.80221 * 180.02562 * 23 19 18 40 40 H 1.08993 * 113.61491 * 89.15923 * 26 13 12 41 41 H 1.09000 * 113.61138 * 220.06261 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.7307 -6.2000 0.1241 13 6 0.7048 -6.7001 -0.9066 14 7 -0.5376 -7.1926 -0.3066 15 6 -1.3097 -8.0687 -0.9795 16 8 -0.9747 -8.4510 -2.0850 17 6 -2.5551 -8.5619 -0.3784 18 6 -3.4221 -9.4457 -0.9495 19 6 -4.4780 -9.6413 -0.0311 20 6 -5.6495 -10.5163 -0.2165 21 7 -6.5837 -10.6055 0.7508 22 8 -5.7726 -11.1584 -1.2419 23 6 -4.2044 -8.8582 1.0744 24 7 -3.0447 -8.2160 0.8622 25 1 -2.6201 -7.6032 1.4828 26 6 0.6142 -5.2488 -1.4073 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6847 -3.7144 0.8906 30 1 2.6849 -3.7145 -0.8894 31 1 0.2382 -4.6702 0.6967 32 1 1.6171 -6.6536 1.1087 33 1 2.7588 -6.2220 -0.2371 34 1 1.1232 -7.3896 -1.6399 35 1 -0.8045 -6.8881 0.5747 36 1 -3.3214 -9.9082 -1.9203 37 1 -6.4854 -10.0937 1.5688 38 1 -7.3549 -11.1811 0.6285 39 1 -4.8171 -8.7798 1.9603 40 1 1.3365 -5.0104 -2.1879 41 1 -0.3995 -4.9357 -1.6572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755219500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:03 Heat of formation + Delta-G solvation = -1.367928 kcal Electronic energy + Delta-G solvation = -23712.445810 eV Core-core repulsion = 20014.726658 eV Total energy + Delta-G solvation = -3697.719152 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.96138 -40.07289 -39.08842 -38.15128 -34.63957 -33.99964 -33.34207 -31.61491 -30.94914 -29.76054 -26.90523 -25.58898 -24.17509 -23.60467 -22.89273 -21.49635 -20.63727 -20.02538 -19.42691 -19.10566 -17.28197 -17.11028 -16.66432 -16.24011 -15.85561 -15.64951 -14.91928 -14.86146 -14.56363 -14.24571 -14.11251 -13.91318 -13.81845 -13.51300 -13.35389 -12.81970 -12.74836 -12.42695 -12.19549 -11.72326 -11.08277 -10.86454 -10.59737 -10.42180 -10.40786 -10.25843 -10.15725 -10.00540 -9.89106 -9.66549 -9.52367 -9.20563 -8.89047 -8.75191 -6.94337 -5.79721 -3.08005 1.05222 1.48977 2.50933 2.81581 3.00799 3.30007 3.32976 3.41219 3.46366 3.47821 4.35190 4.44647 4.54000 4.54643 4.61452 4.74597 4.85390 5.02552 5.06385 5.40017 5.54626 5.59341 5.63707 5.76434 5.86820 5.89683 6.01774 6.04892 6.15099 6.22469 6.30155 6.36363 6.47346 6.54883 6.72433 6.74649 6.87041 7.05247 7.26470 7.67055 7.95181 8.03370 8.39547 9.50608 10.09221 10.43462 11.43286 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002308 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.876784 B =12127.553455 C =12898.695432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 C -0.137 4.137 13 C 0.116 3.884 14 N -0.709 5.709 15 C 0.590 3.410 16 O -0.522 6.522 17 C -0.056 4.056 18 C -0.043 4.043 19 C -0.239 4.239 20 C 0.594 3.406 21 N -0.856 5.856 22 O -0.544 6.544 23 C 0.074 3.926 24 N -0.522 5.522 25 H 0.423 0.577 26 C -0.138 4.138 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.394 0.606 36 H 0.160 0.840 37 H 0.398 0.602 38 H 0.403 0.597 39 H 0.182 0.818 40 H 0.093 0.907 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 -20.904 7.479 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.132 4.132 12 C -0.175 4.175 13 C 0.011 3.989 14 N -0.359 5.359 15 C 0.377 3.623 16 O -0.398 6.398 17 C -0.167 4.167 18 C -0.069 4.069 19 C -0.250 4.250 20 C 0.381 3.619 21 N -0.419 5.419 22 O -0.421 6.421 23 C -0.068 4.068 24 N -0.117 5.117 25 H 0.261 0.739 26 C -0.177 4.177 27 H 0.065 0.935 28 H 0.216 0.784 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.228 0.772 36 H 0.177 0.823 37 H 0.226 0.774 38 H 0.234 0.766 39 H 0.199 0.801 40 H 0.111 0.889 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.477 -21.285 5.986 23.680 hybrid contribution -0.182 1.613 1.293 2.075 sum -8.659 -19.672 7.279 22.693 Atomic orbital electron populations 1.69653 1.05129 1.25636 1.57934 1.24744 0.95538 0.97728 1.03101 0.86187 0.78627 0.83800 0.77565 1.21691 1.21781 1.20771 1.19245 0.91044 0.84247 1.42492 0.91210 1.42341 1.05801 1.00007 1.89441 1.20638 0.92997 0.85180 0.97748 1.22794 0.99026 0.94292 0.97085 1.23315 0.99022 0.96503 0.98706 1.21991 0.83938 0.96212 0.96715 1.45553 1.23881 1.45657 1.20799 1.17004 0.81712 0.78593 0.84993 1.90868 1.71609 1.58381 1.18916 1.20169 0.99854 1.08266 0.88420 1.21106 0.90963 0.95344 0.99497 1.19591 1.00084 1.07649 0.97646 1.17387 0.81503 0.80299 0.82702 1.43678 1.26528 1.50753 1.20968 1.90839 1.77557 1.45762 1.27984 1.22412 0.88817 0.95711 0.99878 1.41780 1.18721 1.35844 1.15334 0.73859 1.23453 1.02638 0.93889 0.97718 0.93542 0.78390 0.96402 0.96113 0.89636 0.91331 0.88464 0.87954 0.77215 0.82274 0.77407 0.76569 0.80137 0.88887 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.18 5.60 -59.91 -0.34 -18.52 16 10 C 0.16 3.10 6.10 -4.05 -0.02 3.08 16 11 C -0.11 -1.63 3.64 -89.71 -0.33 -1.96 16 12 C -0.14 -1.51 7.38 -25.92 -0.19 -1.70 16 13 C 0.12 1.38 4.30 -67.12 -0.29 1.09 16 14 N -0.71 -7.32 5.26 -54.28 -0.29 -7.61 16 15 C 0.59 7.34 7.79 -12.79 -0.10 7.24 16 16 O -0.52 -8.56 16.48 5.21 0.09 -8.47 16 17 C -0.06 -0.57 6.99 -82.41 -0.58 -1.15 16 18 C -0.04 -0.50 10.37 -39.10 -0.41 -0.90 16 19 C -0.24 -2.16 6.13 -105.02 -0.64 -2.81 16 20 C 0.59 5.84 8.09 -12.53 -0.10 5.73 16 21 N -0.86 -4.11 8.86 30.43 0.27 -3.84 16 22 O -0.54 -7.93 17.76 5.27 0.09 -7.83 16 23 C 0.07 0.38 11.43 -16.50 -0.19 0.19 16 24 N -0.52 -3.09 5.91 -9.30 -0.05 -3.15 16 25 H 0.42 1.26 8.14 -40.82 -0.33 0.93 16 26 C -0.14 -1.97 7.45 -25.82 -0.19 -2.16 16 27 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.38 9.98 7.67 -40.82 -0.31 9.67 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.03 8.10 -51.93 -0.42 0.60 16 34 H 0.10 1.30 7.50 -51.93 -0.39 0.91 16 35 H 0.39 2.97 7.79 -40.82 -0.32 2.65 16 36 H 0.16 2.02 8.06 -52.48 -0.42 1.59 16 37 H 0.40 0.53 7.74 -40.82 -0.32 0.22 16 38 H 0.40 1.57 8.93 -40.82 -0.36 1.21 16 39 H 0.18 0.08 7.44 -52.48 -0.39 -0.31 16 40 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -38.32 354.77 -7.79 -46.11 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.32 Total: 8.74 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.28 Total: -0.68 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.32 Total: -60.47 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.18 Total: -16.31 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.32 -7.79 -46.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755219500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.738 kcal (2) G-P(sol) polarization free energy of solvation -38.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds