Wall clock time and date at job start Fri Apr 10 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48501 * 109.47159 * 270.00090 * 3 2 1 5 5 H 1.48506 * 109.47067 * 29.99829 * 3 2 1 6 6 H 1.48500 * 109.47251 * 149.99660 * 3 2 1 7 7 C 1.38812 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00198 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47402 * 179.97438 * 10 9 7 12 12 C 1.53782 * 113.61734 * 185.00278 * 11 10 9 13 13 C 1.53781 * 87.08260 * 220.02231 * 12 11 10 14 14 N 1.46497 * 113.61305 * 270.79919 * 13 12 11 15 15 C 1.34780 * 119.99653 * 203.46742 * 14 13 12 16 16 O 1.21673 * 120.00492 * 0.02562 * 15 14 13 17 17 C 1.46815 * 119.99587 * 180.02562 * 15 14 13 18 18 C 1.36346 * 125.84854 * 180.02562 * 17 15 14 19 19 C 1.41300 * 107.01388 * 179.97438 * 18 17 15 20 20 C 1.47396 * 126.46338 * 180.02562 * 19 18 17 21 21 N 1.34779 * 119.99607 * 179.97438 * 20 19 18 22 22 O 1.21608 * 119.99956 * 0.02562 * 20 19 18 23 23 C 1.38207 * 107.07310 * 359.97438 * 19 18 17 24 24 N 1.34255 * 108.39643 * 359.76809 * 23 19 18 25 25 H 0.97002 * 125.39222 * 180.22590 * 24 23 19 26 26 C 1.53786 * 87.17350 * 25.39213 * 13 12 11 27 27 H 0.97001 * 120.00336 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99671 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46421 * 60.00512 * 10 9 7 30 30 H 1.08998 * 109.47294 * 300.00559 * 10 9 7 31 31 H 1.09002 * 112.84929 * 316.20353 * 11 10 9 32 32 H 1.09001 * 113.61250 * 105.47049 * 12 11 10 33 33 H 1.08997 * 113.61225 * 334.56890 * 12 11 10 34 34 H 1.09002 * 113.61445 * 139.98212 * 13 12 11 35 35 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 36 36 H 1.08005 * 126.49710 * 359.93662 * 18 17 15 37 37 H 0.96993 * 120.00494 * 0.02562 * 21 20 19 38 38 H 0.97005 * 119.99116 * 179.97438 * 21 20 19 39 39 H 1.08003 * 125.80221 * 180.02562 * 23 19 18 40 40 H 1.08993 * 113.61491 * 89.15923 * 26 13 12 41 41 H 1.09000 * 113.61138 * 220.06261 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.7307 -6.2000 0.1241 13 6 0.7048 -6.7001 -0.9066 14 7 -0.5376 -7.1926 -0.3066 15 6 -1.3097 -8.0687 -0.9795 16 8 -0.9747 -8.4510 -2.0850 17 6 -2.5551 -8.5619 -0.3784 18 6 -3.4221 -9.4457 -0.9495 19 6 -4.4780 -9.6413 -0.0311 20 6 -5.6495 -10.5163 -0.2165 21 7 -6.5837 -10.6055 0.7508 22 8 -5.7726 -11.1584 -1.2419 23 6 -4.2044 -8.8582 1.0744 24 7 -3.0447 -8.2160 0.8622 25 1 -2.6201 -7.6032 1.4828 26 6 0.6142 -5.2488 -1.4073 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6847 -3.7144 0.8906 30 1 2.6849 -3.7145 -0.8894 31 1 0.2382 -4.6702 0.6967 32 1 1.6171 -6.6536 1.1087 33 1 2.7588 -6.2220 -0.2371 34 1 1.1232 -7.3896 -1.6399 35 1 -0.8045 -6.8881 0.5747 36 1 -3.3214 -9.9082 -1.9203 37 1 -6.4854 -10.0937 1.5688 38 1 -7.3549 -11.1811 0.6285 39 1 -4.8171 -8.7798 1.9603 40 1 1.3365 -5.0104 -2.1879 41 1 -0.3995 -4.9357 -1.6572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755219500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:03 Heat of formation + Delta-G solvation = -34.162221 kcal Electronic energy + Delta-G solvation = -23713.867877 eV Core-core repulsion = 20014.726658 eV Total energy + Delta-G solvation = -3699.141219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.64840 -41.06862 -39.87897 -39.22181 -36.36566 -34.72369 -34.52908 -32.86470 -32.24524 -30.54280 -28.47345 -26.64992 -25.54770 -24.48667 -24.03066 -22.86724 -21.38730 -20.72046 -20.41922 -20.00668 -19.06879 -17.86843 -17.38894 -17.15709 -16.73375 -16.63227 -16.48954 -15.82432 -15.74452 -15.57835 -15.15727 -15.03081 -14.74559 -14.66951 -14.44650 -14.31443 -13.72846 -13.40182 -13.37629 -13.12084 -12.93007 -12.70944 -12.18262 -11.93868 -11.78995 -11.39488 -11.35653 -11.19973 -11.15492 -10.86613 -10.63063 -10.25219 -10.15800 -9.42090 -8.97875 -7.95845 -5.23622 0.35282 0.76306 1.46811 1.48488 1.56666 1.87583 2.02614 2.13673 2.55637 2.56223 2.77825 3.37358 3.55642 3.58081 3.74560 3.88407 3.92438 3.93946 4.06808 4.26121 4.32839 4.54713 4.73254 4.79393 4.84433 4.85333 4.89506 4.91165 4.98437 5.13669 5.24632 5.29377 5.35633 5.48421 5.53243 5.64344 5.98700 6.27380 6.28968 6.44994 6.61528 7.04658 7.33519 7.46566 8.11686 8.33618 9.27737 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002308 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.876784 B =12127.553455 C =12898.695432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.158 3.842 11 C -0.109 4.109 12 C -0.113 4.113 13 C 0.125 3.875 14 N -0.694 5.694 15 C 0.589 3.411 16 O -0.573 6.573 17 C -0.071 4.071 18 C -0.070 4.070 19 C -0.270 4.270 20 C 0.590 3.410 21 N -0.828 5.828 22 O -0.607 6.607 23 C 0.126 3.874 24 N -0.504 5.504 25 H 0.442 0.558 26 C -0.145 4.145 27 H 0.251 0.749 28 H 0.373 0.627 29 H 0.024 0.976 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.411 0.589 36 H 0.128 0.872 37 H 0.419 0.581 38 H 0.411 0.589 39 H 0.243 0.757 40 H 0.084 0.916 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 -20.910 10.730 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.128 4.128 12 C -0.151 4.151 13 C 0.019 3.981 14 N -0.345 5.345 15 C 0.377 3.623 16 O -0.452 6.452 17 C -0.182 4.182 18 C -0.096 4.096 19 C -0.280 4.280 20 C 0.377 3.623 21 N -0.392 5.392 22 O -0.489 6.489 23 C -0.019 4.019 24 N -0.100 5.100 25 H 0.284 0.716 26 C -0.184 4.184 27 H 0.060 0.940 28 H 0.205 0.795 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.248 0.752 36 H 0.146 0.854 37 H 0.251 0.749 38 H 0.242 0.758 39 H 0.259 0.741 40 H 0.102 0.898 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.401 -21.276 9.343 24.709 hybrid contribution -0.224 1.580 0.325 1.628 sum -8.626 -19.696 9.668 23.576 Atomic orbital electron populations 1.69802 1.06557 1.26020 1.59697 1.25556 0.96425 1.01088 1.03891 0.85161 0.77803 0.79586 0.77349 1.21684 1.22095 1.19328 1.19658 0.91515 0.85553 1.40917 0.90745 1.42572 1.05593 1.01256 1.89302 1.20841 0.93840 0.84559 0.97546 1.22723 0.98562 0.94263 0.97201 1.23219 0.98838 0.93261 0.99831 1.21815 0.84769 0.94427 0.97041 1.45383 1.23106 1.44783 1.21225 1.17314 0.82262 0.78262 0.84423 1.90838 1.72935 1.60258 1.21199 1.19638 0.99180 1.09062 0.90333 1.21064 0.92942 0.96317 0.99323 1.19595 0.99848 1.09630 0.98885 1.17598 0.82272 0.79787 0.82596 1.43422 1.25273 1.50037 1.20489 1.90807 1.79018 1.48426 1.30697 1.23223 0.87491 0.91582 0.99576 1.41730 1.18717 1.35623 1.13935 0.71627 1.23469 1.01307 0.95964 0.97658 0.94046 0.79524 0.95815 0.96383 0.89177 0.88475 0.87515 0.88733 0.75224 0.85444 0.74928 0.75762 0.74098 0.89754 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -36.86 5.60 -343.46 -1.92 -38.78 16 10 C 0.16 5.89 6.10 86.38 0.53 6.42 16 11 C -0.11 -2.97 3.64 -10.21 -0.04 -3.01 16 12 C -0.11 -2.17 7.38 31.12 0.23 -1.94 16 13 C 0.12 2.82 4.30 45.52 0.20 3.01 16 14 N -0.69 -13.38 5.26 -443.87 -2.34 -15.72 16 15 C 0.59 14.74 7.79 86.49 0.67 15.41 16 16 O -0.57 -19.83 16.48 -4.26 -0.07 -19.90 16 17 C -0.07 -1.41 6.99 40.01 0.28 -1.13 16 18 C -0.07 -1.68 10.37 22.58 0.23 -1.44 16 19 C -0.27 -4.56 6.13 -20.12 -0.12 -4.68 16 20 C 0.59 11.27 8.09 86.65 0.70 11.97 16 21 N -0.83 -5.89 8.86 -175.90 -1.56 -7.45 16 22 O -0.61 -18.69 17.76 -4.05 -0.07 -18.76 16 23 C 0.13 0.75 11.43 84.32 0.96 1.72 16 24 N -0.50 -4.27 5.91 -183.35 -1.08 -5.36 16 25 H 0.44 0.64 8.14 -92.71 -0.75 -0.12 16 26 C -0.15 -4.11 7.45 31.18 0.23 -3.88 16 27 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.37 19.61 7.67 -92.71 -0.71 18.90 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.02 0.69 7.85 -2.39 -0.02 0.67 16 31 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 34 H 0.09 2.37 7.50 -2.39 -0.02 2.35 16 35 H 0.41 5.02 7.79 -92.71 -0.72 4.30 16 36 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.42 -0.72 7.74 -92.71 -0.72 -1.44 16 38 H 0.41 2.36 8.93 -92.70 -0.83 1.53 16 39 H 0.24 -1.59 7.44 -2.91 -0.02 -1.61 16 40 H 0.08 2.51 7.90 -2.39 -0.02 2.49 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -89.07 354.77 -2.16 -91.22 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -2.60 Total: 19.65 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.18 Total: 5.82 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -6.62 Total: -125.78 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.14 Total: -38.66 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -89.07 -2.16 -91.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755219500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.062 kcal (2) G-P(sol) polarization free energy of solvation -89.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds