Wall clock time and date at job start Fri Apr 10 2020 17:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.09006 * 109.86916 * 55.80036 * 3 2 1 5 5 C 1.54320 * 109.88229 * 294.78921 * 3 2 1 6 6 H 1.09001 * 110.72110 * 336.77231 * 5 3 2 7 7 N 1.46497 * 110.72504 * 99.87136 * 5 3 2 8 8 C 1.34775 * 120.00344 * 204.72823 * 7 5 3 9 9 O 1.21284 * 119.99633 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00550 * 180.02562 * 8 7 5 11 11 C 1.50694 * 109.47407 * 179.97438 * 10 8 7 12 12 N 1.36877 * 126.59159 * 265.02313 * 11 10 8 13 13 H 0.96997 * 126.40121 * 359.97438 * 12 11 10 14 14 C 1.35049 * 107.20527 * 179.97438 * 12 11 10 15 15 N 1.30495 * 108.70048 * 0.02562 * 14 12 11 16 16 C 1.34132 * 109.25633 * 359.75123 * 15 14 12 17 17 C 1.50698 * 125.99021 * 180.24950 * 16 15 14 18 18 C 1.55159 * 102.94214 * 218.23182 * 5 3 2 19 19 C 1.54919 * 101.57914 * 35.49921 * 18 5 3 20 20 N 1.47021 * 110.01416 * 176.89615 * 3 2 1 21 21 C 1.36938 * 125.65161 * 298.46988 * 20 3 2 22 22 H 1.08005 * 119.99795 * 345.38363 * 21 20 3 23 23 C 1.38810 * 120.00073 * 165.37969 * 21 20 3 24 24 N 1.31613 * 119.99958 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99826 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47211 * 60.00158 * 25 23 21 27 27 H 1.48500 * 109.47116 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47184 * 300.00072 * 25 23 21 29 29 H 1.08995 * 109.47093 * 305.57804 * 1 2 3 30 30 H 1.08994 * 109.46964 * 65.58070 * 1 2 3 31 31 H 1.09001 * 109.46759 * 185.58187 * 1 2 3 32 32 H 1.09002 * 109.47380 * 239.99949 * 2 1 3 33 33 H 1.09007 * 109.47144 * 119.99896 * 2 1 3 34 34 H 0.97001 * 119.99934 * 24.99436 * 7 5 3 35 35 H 1.09001 * 109.46545 * 299.99400 * 10 8 7 36 36 H 1.08996 * 109.46976 * 59.99246 * 10 8 7 37 37 H 1.08001 * 125.64816 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47275 * 270.17596 * 17 16 15 39 39 H 1.08994 * 109.47648 * 30.17587 * 17 16 15 40 40 H 1.09005 * 109.47042 * 150.18160 * 17 16 15 41 41 H 1.08999 * 111.00469 * 153.56974 * 18 5 3 42 42 H 1.08998 * 111.00726 * 277.42713 * 18 5 3 43 43 H 1.09003 * 110.36458 * 204.14932 * 19 18 5 44 44 H 1.09000 * 110.45696 * 81.87556 * 19 18 5 45 45 H 0.97004 * 120.00126 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6203 1.9838 0.8479 5 6 1.6414 2.1401 -1.3175 6 1 1.4662 1.4067 -2.1046 7 7 0.4573 2.9801 -1.1216 8 6 -0.3432 3.2707 -2.1662 9 8 -0.0829 2.8371 -3.2686 10 6 -1.5610 4.1353 -1.9649 11 6 -2.2780 4.3070 -3.2791 12 7 -2.1332 5.3465 -4.1578 13 1 -1.5486 6.1131 -4.0513 14 6 -2.9564 5.1054 -5.2009 15 7 -3.5820 3.9800 -4.9888 16 6 -3.1807 3.4648 -3.8172 17 6 -3.6585 2.1718 -3.2082 18 6 2.8847 3.0106 -1.6398 19 6 4.0371 2.1042 -1.1397 20 7 3.5083 1.4570 0.0748 21 6 4.2602 0.9523 1.1020 22 1 3.7932 0.7124 2.0458 23 6 5.6225 0.7488 0.9301 24 7 6.1917 1.0416 -0.2200 25 14 6.6480 0.0596 2.3310 26 1 6.1305 -1.2794 2.7111 27 1 8.0627 -0.0611 1.8961 28 1 6.5661 0.9720 3.4998 29 1 -0.3633 0.5979 0.8358 30 1 -0.3633 0.4248 -0.9357 31 1 -0.3633 -1.0228 0.1000 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 0.2514 3.3304 -0.2408 35 1 -2.2286 3.6606 -1.2457 36 1 -1.2554 5.1112 -1.5878 37 1 -3.0769 5.7390 -6.0672 38 1 -4.5303 2.3649 -2.5831 39 1 -3.9274 1.4741 -4.0012 40 1 -2.8633 1.7412 -2.5995 41 1 2.9673 3.1922 -2.7114 42 1 2.8581 3.9496 -1.0869 43 1 4.9144 2.7044 -0.8984 44 1 4.2860 1.3549 -1.8911 45 1 7.1437 0.8998 -0.3400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087810190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:10 Heat of formation + Delta-G solvation = 34.041103 kcal Electronic energy + Delta-G solvation = -25738.246022 eV Core-core repulsion = 22177.895415 eV Total energy + Delta-G solvation = -3560.350606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.20986 -39.68249 -37.71559 -34.03044 -33.19620 -32.92510 -32.68039 -31.67445 -29.40581 -28.64839 -26.68730 -25.76220 -24.32692 -22.36644 -21.77275 -20.73873 -20.21525 -19.88367 -19.35955 -17.84705 -17.03135 -16.83546 -15.89469 -15.39005 -15.04585 -14.77986 -14.43376 -14.07765 -13.86717 -13.80990 -13.32352 -13.13380 -12.89126 -12.83007 -12.69624 -12.45018 -12.16810 -11.97911 -11.92604 -11.65892 -11.16943 -10.91465 -10.85339 -10.63946 -10.47278 -10.30960 -10.13164 -10.06274 -9.97264 -9.78418 -9.67960 -9.63497 -8.67260 -8.58813 -8.29372 -6.83845 -5.78150 -3.14750 1.87002 2.73361 2.95279 3.03811 3.36583 3.41048 3.42836 3.47127 4.40710 4.45521 4.60100 4.78848 4.92826 5.14763 5.22231 5.24876 5.29016 5.33883 5.49105 5.52736 5.66782 5.74086 5.78255 5.83904 5.87714 5.95096 6.04062 6.08013 6.19794 6.27995 6.38847 6.44601 6.53947 6.63765 6.67890 6.72404 6.93442 7.12712 7.26068 7.47179 7.57458 7.69582 7.75564 7.98508 8.23300 8.38620 9.15068 9.76229 10.44009 11.33719 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.003102 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.730802 B = 9024.962777 C = 9569.216904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.094 0.906 7 N -0.714 5.714 8 C 0.509 3.491 9 O -0.530 6.530 10 C -0.067 4.067 11 C -0.004 4.004 12 N -0.563 5.563 13 H 0.418 0.582 14 C 0.186 3.814 15 N -0.493 5.493 16 C 0.020 3.980 17 C -0.068 4.068 18 C -0.156 4.156 19 C 0.174 3.826 20 N -0.594 5.594 21 C -0.230 4.230 22 H 0.075 0.925 23 C -0.003 4.003 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.207 0.793 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.028 0.972 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.202 9.112 -3.031 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.112 0.888 7 N -0.365 5.365 8 C 0.294 3.706 9 O -0.406 6.406 10 C -0.108 4.108 11 C -0.119 4.119 12 N -0.166 5.166 13 H 0.255 0.745 14 C -0.098 4.098 15 N -0.213 5.213 16 C -0.109 4.109 17 C -0.126 4.126 18 C -0.196 4.196 19 C 0.049 3.951 20 N -0.318 5.318 21 C -0.358 4.358 22 H 0.092 0.908 23 C -0.200 4.200 24 N -0.563 5.563 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.223 0.777 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.355 8.336 -4.329 19.734 hybrid contribution 1.495 0.615 1.580 2.261 sum -15.860 8.951 -2.749 18.417 Atomic orbital electron populations 1.21764 0.97205 1.00533 1.00881 1.22013 0.93637 0.99154 1.02384 1.21078 0.87040 0.93379 0.93201 0.94797 1.22103 0.83289 0.92437 0.98773 0.88811 1.46062 1.26941 1.52352 1.11155 1.20383 0.83921 0.81402 0.84918 1.90747 1.72985 1.52508 1.24316 1.20059 0.95527 1.01447 0.93775 1.20171 1.04091 0.92287 0.95380 1.43114 1.35147 1.20664 1.17651 0.74490 1.24839 0.93664 0.97321 0.93931 1.70157 1.26204 1.08338 1.16587 1.20414 0.99280 0.98090 0.93153 1.20033 1.00546 0.91964 1.00046 1.23413 0.96978 0.99021 1.00170 1.21425 0.93049 0.92911 0.87718 1.44435 0.98416 1.68305 1.20691 1.18892 0.89873 1.36162 0.90874 0.90751 1.24909 0.97237 1.00860 0.96967 1.69915 1.10673 1.52721 1.22964 0.86235 0.79408 0.79099 0.81206 1.21053 1.21599 1.21136 0.93454 0.93287 0.93678 0.92415 0.91753 0.76866 0.86688 0.88347 0.77676 0.91582 0.91110 0.91430 0.92109 0.92149 0.90862 0.95431 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.57 37.16 0.36 -1.72 16 2 C -0.13 -2.40 5.42 -26.73 -0.14 -2.54 16 3 C 0.16 3.08 2.93 -66.96 -0.20 2.88 16 4 H 0.03 0.63 7.72 -51.93 -0.40 0.23 16 5 C 0.14 2.38 2.01 -66.10 -0.13 2.25 16 6 H 0.09 1.81 7.20 -51.93 -0.37 1.44 16 7 N -0.71 -9.28 4.90 -52.03 -0.25 -9.53 16 8 C 0.51 6.74 7.82 -10.99 -0.09 6.65 16 9 O -0.53 -9.49 15.68 5.55 0.09 -9.40 16 10 C -0.07 -0.61 5.81 -29.04 -0.17 -0.78 16 11 C 0.00 -0.04 5.73 -81.60 -0.47 -0.51 16 12 N -0.56 -5.29 6.15 -10.30 -0.06 -5.36 16 13 H 0.42 2.59 8.96 -40.82 -0.37 2.23 16 14 C 0.19 1.90 13.04 -90.37 -1.18 0.72 16 15 N -0.49 -6.75 11.25 -10.87 -0.12 -6.88 16 16 C 0.02 0.26 7.09 -82.85 -0.59 -0.33 16 17 C -0.07 -0.76 10.14 36.00 0.37 -0.39 16 18 C -0.16 -2.95 6.77 -24.58 -0.17 -3.12 16 19 C 0.17 4.13 5.41 -2.53 -0.01 4.12 16 20 N -0.59 -14.35 3.13 -162.57 -0.51 -14.86 16 21 C -0.23 -6.11 9.75 -15.06 -0.15 -6.26 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C 0.00 -0.07 5.47 -17.43 -0.10 -0.17 16 24 N -0.92 -26.31 10.57 55.49 0.59 -25.72 16 25 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.69 7.40 -51.93 -0.38 0.31 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.06 1.26 7.91 -51.92 -0.41 0.85 16 34 H 0.40 4.10 8.37 -40.82 -0.34 3.76 16 35 H 0.12 0.80 8.04 -51.93 -0.42 0.38 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.93 6.93 -51.93 -0.36 1.57 16 44 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -34.56 367.26 -9.66 -44.21 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.23 Total: 4.67 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.66 Total: 0.82 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.36 Total: -62.34 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.56 -9.66 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087810190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.256 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds