Wall clock time and date at job start Fri Apr 10 2020 17:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.09006 * 109.86916 * 55.80036 * 3 2 1 5 5 C 1.54320 * 109.88229 * 294.78921 * 3 2 1 6 6 H 1.09001 * 110.72110 * 336.77231 * 5 3 2 7 7 N 1.46497 * 110.72504 * 99.87136 * 5 3 2 8 8 C 1.34775 * 120.00344 * 204.72823 * 7 5 3 9 9 O 1.21284 * 119.99633 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00550 * 180.02562 * 8 7 5 11 11 C 1.50694 * 109.47407 * 179.97438 * 10 8 7 12 12 N 1.36877 * 126.59159 * 265.02313 * 11 10 8 13 13 H 0.96997 * 126.40121 * 359.97438 * 12 11 10 14 14 C 1.35049 * 107.20527 * 179.97438 * 12 11 10 15 15 N 1.30495 * 108.70048 * 0.02562 * 14 12 11 16 16 C 1.34132 * 109.25633 * 359.75123 * 15 14 12 17 17 C 1.50698 * 125.99021 * 180.24950 * 16 15 14 18 18 C 1.55159 * 102.94214 * 218.23182 * 5 3 2 19 19 C 1.54919 * 101.57914 * 35.49921 * 18 5 3 20 20 N 1.47021 * 110.01416 * 176.89615 * 3 2 1 21 21 C 1.36938 * 125.65161 * 298.46988 * 20 3 2 22 22 H 1.08005 * 119.99795 * 345.38363 * 21 20 3 23 23 C 1.38810 * 120.00073 * 165.37969 * 21 20 3 24 24 N 1.31613 * 119.99958 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99826 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47211 * 60.00158 * 25 23 21 27 27 H 1.48500 * 109.47116 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47184 * 300.00072 * 25 23 21 29 29 H 1.08995 * 109.47093 * 305.57804 * 1 2 3 30 30 H 1.08994 * 109.46964 * 65.58070 * 1 2 3 31 31 H 1.09001 * 109.46759 * 185.58187 * 1 2 3 32 32 H 1.09002 * 109.47380 * 239.99949 * 2 1 3 33 33 H 1.09007 * 109.47144 * 119.99896 * 2 1 3 34 34 H 0.97001 * 119.99934 * 24.99436 * 7 5 3 35 35 H 1.09001 * 109.46545 * 299.99400 * 10 8 7 36 36 H 1.08996 * 109.46976 * 59.99246 * 10 8 7 37 37 H 1.08001 * 125.64816 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47275 * 270.17596 * 17 16 15 39 39 H 1.08994 * 109.47648 * 30.17587 * 17 16 15 40 40 H 1.09005 * 109.47042 * 150.18160 * 17 16 15 41 41 H 1.08999 * 111.00469 * 153.56974 * 18 5 3 42 42 H 1.08998 * 111.00726 * 277.42713 * 18 5 3 43 43 H 1.09003 * 110.36458 * 204.14932 * 19 18 5 44 44 H 1.09000 * 110.45696 * 81.87556 * 19 18 5 45 45 H 0.97004 * 120.00126 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6203 1.9838 0.8479 5 6 1.6414 2.1401 -1.3175 6 1 1.4662 1.4067 -2.1046 7 7 0.4573 2.9801 -1.1216 8 6 -0.3432 3.2707 -2.1662 9 8 -0.0829 2.8371 -3.2686 10 6 -1.5610 4.1353 -1.9649 11 6 -2.2780 4.3070 -3.2791 12 7 -2.1332 5.3465 -4.1578 13 1 -1.5486 6.1131 -4.0513 14 6 -2.9564 5.1054 -5.2009 15 7 -3.5820 3.9800 -4.9888 16 6 -3.1807 3.4648 -3.8172 17 6 -3.6585 2.1718 -3.2082 18 6 2.8847 3.0106 -1.6398 19 6 4.0371 2.1042 -1.1397 20 7 3.5083 1.4570 0.0748 21 6 4.2602 0.9523 1.1020 22 1 3.7932 0.7124 2.0458 23 6 5.6225 0.7488 0.9301 24 7 6.1917 1.0416 -0.2200 25 14 6.6480 0.0596 2.3310 26 1 6.1305 -1.2794 2.7111 27 1 8.0627 -0.0611 1.8961 28 1 6.5661 0.9720 3.4998 29 1 -0.3633 0.5979 0.8358 30 1 -0.3633 0.4248 -0.9357 31 1 -0.3633 -1.0228 0.1000 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 0.2514 3.3304 -0.2408 35 1 -2.2286 3.6606 -1.2457 36 1 -1.2554 5.1112 -1.5878 37 1 -3.0769 5.7390 -6.0672 38 1 -4.5303 2.3649 -2.5831 39 1 -3.9274 1.4741 -4.0012 40 1 -2.8633 1.7412 -2.5995 41 1 2.9673 3.1922 -2.7114 42 1 2.8581 3.9496 -1.0869 43 1 4.9144 2.7044 -0.8984 44 1 4.2860 1.3549 -1.8911 45 1 7.1437 0.8998 -0.3400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087810190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:09 Heat of formation + Delta-G solvation = 10.776999 kcal Electronic energy + Delta-G solvation = -25739.254829 eV Core-core repulsion = 22177.895415 eV Total energy + Delta-G solvation = -3561.359414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.99526 -40.93415 -39.21578 -35.57906 -34.28968 -33.98728 -33.75795 -33.29599 -30.93846 -29.77806 -28.06255 -26.83635 -26.05669 -23.73169 -22.67080 -22.21595 -21.57781 -21.23214 -20.37712 -18.76826 -18.63184 -18.04734 -17.25231 -16.68463 -16.31001 -15.97352 -15.73468 -15.49050 -15.35245 -15.04867 -14.50150 -14.26230 -14.12876 -13.83575 -13.66016 -13.59646 -13.52347 -13.25237 -13.05945 -12.98856 -12.85682 -12.67399 -12.55694 -12.21149 -12.05809 -11.97645 -11.88000 -11.56100 -11.34302 -10.96654 -10.89243 -10.70374 -10.64665 -9.92856 -9.10816 -8.82258 -7.85089 -5.23019 1.06475 1.47380 1.50081 1.56120 1.71674 2.11004 2.28259 2.42904 2.54977 3.35077 3.58630 3.67841 3.86847 3.87728 3.92707 4.11364 4.16073 4.22577 4.39656 4.43374 4.45945 4.50468 4.61570 4.64337 4.68411 4.77505 4.89497 4.91538 5.02151 5.06015 5.12904 5.19073 5.23552 5.30428 5.34837 5.47842 5.51536 5.58353 5.70882 5.71947 5.87276 6.24059 6.61009 6.68560 7.09501 7.19533 7.36724 7.77794 8.44794 9.26012 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.003102 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.730802 B = 9024.962777 C = 9569.216904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 C 0.159 3.841 4 H 0.057 0.943 5 C 0.159 3.841 6 H 0.071 0.929 7 N -0.700 5.700 8 C 0.513 3.487 9 O -0.579 6.579 10 C -0.056 4.056 11 C -0.012 4.012 12 N -0.555 5.555 13 H 0.433 0.567 14 C 0.189 3.811 15 N -0.540 5.540 16 C -0.014 4.014 17 C -0.066 4.066 18 C -0.140 4.140 19 C 0.181 3.819 20 N -0.613 5.613 21 C -0.233 4.233 22 H 0.084 0.916 23 C -0.063 4.063 24 N -0.950 5.950 25 Si 0.974 3.026 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.048 0.952 34 H 0.416 0.584 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.242 0.758 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.040 0.960 44 H -0.011 1.011 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.458 10.703 -1.334 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.052 3.948 4 H 0.075 0.925 5 C 0.052 3.948 6 H 0.089 0.911 7 N -0.352 5.352 8 C 0.300 3.700 9 O -0.458 6.458 10 C -0.096 4.096 11 C -0.128 4.128 12 N -0.159 5.159 13 H 0.273 0.727 14 C -0.095 4.095 15 N -0.260 5.260 16 C -0.142 4.142 17 C -0.124 4.124 18 C -0.179 4.179 19 C 0.055 3.945 20 N -0.338 5.338 21 C -0.362 4.362 22 H 0.101 0.899 23 C -0.257 4.257 24 N -0.599 5.599 25 Si 0.803 3.197 26 H -0.204 1.204 27 H -0.225 1.225 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.254 0.746 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.258 0.742 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.007 0.993 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.661 9.961 -2.580 22.191 hybrid contribution 2.148 0.136 0.990 2.369 sum -17.513 10.097 -1.590 20.278 Atomic orbital electron populations 1.21643 0.93529 1.01934 1.01934 1.21915 0.96769 0.97810 1.00240 1.21279 0.84237 0.94453 0.94832 0.92520 1.21555 0.84288 0.91975 0.96941 0.91058 1.45796 1.25404 1.51613 1.12411 1.21092 0.84402 0.80723 0.83770 1.90747 1.74261 1.54420 1.26358 1.20125 0.93530 1.02523 0.93434 1.20446 1.03715 0.92361 0.96307 1.43139 1.34958 1.20808 1.17017 0.72675 1.25565 0.92573 0.96703 0.94665 1.70121 1.28162 1.10179 1.17581 1.20827 1.00588 0.99137 0.93669 1.20038 1.01251 0.91264 0.99808 1.23209 0.95725 0.98821 1.00188 1.21123 0.93959 0.92295 0.87088 1.44683 1.00733 1.68326 1.20044 1.19284 0.90299 1.34780 0.91808 0.89873 1.25711 0.98633 1.02040 0.99267 1.70136 1.10254 1.54503 1.24985 0.85217 0.77183 0.78643 0.78685 1.20436 1.22532 1.19952 0.90986 0.93186 0.92527 0.95162 0.93367 0.74619 0.83766 0.84676 0.74203 0.89720 0.92509 0.91406 0.92039 0.90400 0.94166 0.99318 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.57 71.98 0.69 -2.71 16 2 C -0.13 -4.55 5.42 30.60 0.17 -4.38 16 3 C 0.16 5.87 2.93 45.34 0.13 6.01 16 4 H 0.06 1.89 7.72 -2.38 -0.02 1.87 16 5 C 0.16 5.28 2.01 46.18 0.09 5.37 16 6 H 0.07 2.76 7.20 -2.39 -0.02 2.75 16 7 N -0.70 -15.93 4.90 -436.92 -2.14 -18.07 16 8 C 0.51 12.08 7.82 87.66 0.69 12.76 16 9 O -0.58 -20.00 15.68 -3.04 -0.05 -20.05 16 10 C -0.06 -0.78 5.81 29.10 0.17 -0.61 16 11 C -0.01 -0.24 5.73 40.95 0.23 0.00 16 12 N -0.56 -8.96 6.15 -186.50 -1.15 -10.10 16 13 H 0.43 4.00 8.96 -92.71 -0.83 3.17 16 14 C 0.19 3.48 13.04 180.26 2.35 5.84 16 15 N -0.54 -14.27 11.25 -188.31 -2.12 -16.39 16 16 C -0.01 -0.34 7.09 41.39 0.29 -0.05 16 17 C -0.07 -1.39 10.14 71.24 0.72 -0.67 16 18 C -0.14 -5.24 6.77 31.99 0.22 -5.02 16 19 C 0.18 8.93 5.41 86.86 0.47 9.40 16 20 N -0.61 -29.96 3.13 -668.25 -2.09 -32.05 16 21 C -0.23 -12.46 9.75 84.03 0.82 -11.64 16 22 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 23 C -0.06 -3.52 5.47 84.86 0.46 -3.06 16 24 N -0.95 -56.84 10.57 21.65 0.23 -56.61 16 25 Si 0.97 44.86 29.55 68.60 2.03 46.88 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.29 7.40 -2.39 -0.02 1.27 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 33 H 0.05 1.85 7.91 -2.38 -0.02 1.83 16 34 H 0.42 6.61 8.37 -92.71 -0.78 5.83 16 35 H 0.14 1.26 8.04 -2.39 -0.02 1.24 16 36 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.24 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.37 7.89 -2.38 -0.02 1.35 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.04 2.22 6.93 -2.39 -0.02 2.20 16 44 H -0.01 -0.63 8.06 -2.39 -0.02 -0.65 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -79.66 367.26 1.61 -78.04 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -0.60 Total: 17.11 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.51 Total: 11.23 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -7.27 Total: -133.23 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -79.66 1.61 -78.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087810190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.822 kcal (2) G-P(sol) polarization free energy of solvation -79.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds