Wall clock time and date at job start Fri Apr 10 2020 17:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47017 * 2 1 4 4 C 1.38044 * 126.29076 * 269.99664 * 3 2 1 5 5 C 1.47432 * 126.41281 * 359.94802 * 4 3 2 6 6 O 1.21602 * 120.00026 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99782 * 180.02562 * 7 5 4 9 9 H 1.08994 * 110.64261 * 328.14146 * 8 7 5 10 10 C 1.55156 * 110.87310 * 91.39021 * 8 7 5 11 11 C 1.54690 * 101.67687 * 153.76783 * 10 8 7 12 12 N 1.47417 * 104.94416 * 323.27618 * 11 10 8 13 13 C 1.36936 * 125.65090 * 204.07420 * 12 11 10 14 14 H 1.07995 * 119.99950 * 162.77811 * 13 12 11 15 15 C 1.38807 * 119.99818 * 342.77693 * 13 12 11 16 16 N 1.31620 * 120.00127 * 332.47990 * 15 13 12 17 17 Si 1.86794 * 119.99999 * 152.47562 * 15 13 12 18 18 H 1.48502 * 109.47291 * 270.00387 * 17 15 13 19 19 H 1.48504 * 109.47132 * 30.00203 * 17 15 13 20 20 H 1.48500 * 109.47362 * 150.00015 * 17 15 13 21 21 C 1.47029 * 108.70278 * 23.80762 * 12 11 10 22 22 H 1.08991 * 109.88584 * 239.75334 * 21 12 11 23 23 C 1.52994 * 109.88057 * 118.73903 * 21 12 11 24 24 C 1.41290 * 107.17457 * 180.20833 * 4 3 2 25 25 N 1.30452 * 108.01655 * 359.61745 * 24 4 3 26 26 N 1.34259 * 126.29411 * 89.97553 * 3 2 1 27 27 C 1.46502 * 125.75247 * 0.02562 * 26 3 2 28 28 H 1.09006 * 109.47193 * 300.00215 * 1 2 3 29 29 H 1.08999 * 109.47320 * 59.99747 * 1 2 3 30 30 H 1.08996 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47189 * 240.00119 * 2 1 3 32 32 H 1.08997 * 109.47210 * 119.99723 * 2 1 3 33 33 H 0.96998 * 120.00485 * 359.97438 * 7 5 4 34 34 H 1.09001 * 111.00181 * 272.00971 * 10 8 7 35 35 H 1.08997 * 111.00468 * 35.85650 * 10 8 7 36 36 H 1.09001 * 110.38924 * 204.36196 * 11 10 8 37 37 H 1.08997 * 110.23111 * 82.11336 * 11 10 8 38 38 H 0.97003 * 120.00028 * 353.98686 * 16 15 13 39 39 H 1.08997 * 109.47546 * 61.45467 * 23 21 12 40 40 H 1.08999 * 109.47022 * 181.45484 * 23 21 12 41 41 H 1.08999 * 109.47407 * 301.45636 * 23 21 12 42 42 H 1.08002 * 125.99489 * 179.74286 * 24 4 3 43 43 H 1.09005 * 109.47064 * 89.99993 * 27 26 3 44 44 H 1.09003 * 109.46690 * 209.99619 * 27 26 3 45 45 H 1.08997 * 109.46953 * 329.99813 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3047 2.1911 -1.1127 5 6 2.1597 1.7775 -2.5203 6 8 1.7657 0.6586 -2.7877 7 7 2.4638 2.6395 -3.5107 8 6 2.3192 2.2287 -4.9095 9 1 2.5139 1.1618 -5.0187 10 6 0.9089 2.5872 -5.4480 11 6 1.1796 2.7293 -6.9644 12 7 2.5163 3.3442 -7.0560 13 6 2.9888 4.0730 -8.1146 14 1 3.8522 4.7095 -7.9896 15 6 2.3578 3.9937 -9.3485 16 7 1.7053 2.9013 -9.6850 17 14 2.4347 5.4374 -10.5313 18 1 1.2860 6.3445 -10.2806 19 1 3.7049 6.1788 -10.3256 20 1 2.3745 4.9368 -11.9281 21 6 3.2560 3.0507 -5.8197 22 1 3.5325 3.9808 -5.3234 23 6 4.5127 2.2411 -6.1450 24 6 2.7543 3.4481 -0.6500 25 7 2.7406 3.4264 0.6543 26 7 2.2967 2.1703 1.0821 27 6 2.1462 1.7445 2.4758 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7777 3.5322 -3.2975 34 1 0.1991 1.7841 -5.2496 35 1 0.5580 3.5295 -5.0272 36 1 0.4324 3.3758 -7.4247 37 1 1.1795 1.7490 -7.4408 38 1 1.7377 2.1205 -9.1103 39 1 5.1623 2.8248 -6.7972 40 1 5.0420 2.0052 -5.2218 41 1 4.2293 1.3164 -6.6477 42 1 3.0545 4.2816 -1.2677 43 1 3.0779 1.2967 2.8216 44 1 1.9062 2.6084 3.0956 45 1 1.3424 1.0117 2.5470 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088699772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:19 Heat of formation + Delta-G solvation = 31.159892 kcal Electronic energy + Delta-G solvation = -25607.222846 eV Core-core repulsion = 22046.747301 eV Total energy + Delta-G solvation = -3560.475545 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.53505 -40.70008 -39.11360 -35.87130 -35.20861 -34.05864 -33.65691 -32.22616 -30.72510 -29.98057 -28.11708 -26.47340 -25.68734 -24.79578 -23.47034 -22.18221 -21.68568 -21.36579 -20.43582 -19.27790 -18.55423 -17.43282 -16.90839 -16.70663 -16.11505 -15.93592 -15.61392 -15.52169 -15.41082 -15.16518 -14.97778 -14.62493 -14.42371 -14.25124 -13.70915 -13.52188 -13.41560 -13.40898 -13.22133 -13.01962 -12.66733 -12.56820 -12.47775 -12.22254 -12.17776 -12.07876 -11.85644 -11.68960 -11.65751 -11.51070 -10.86401 -10.49989 -10.41857 -10.08729 -9.59606 -8.99873 -8.26977 -5.29586 0.47896 1.13085 1.38937 1.60351 1.68220 1.85037 2.22758 2.45216 2.68898 3.23137 3.42309 3.48008 3.55390 3.76586 3.81691 3.90930 4.02448 4.15673 4.26952 4.30479 4.35439 4.39740 4.45068 4.49618 4.52605 4.64042 4.66130 4.69266 4.75000 4.86078 4.95253 4.98453 5.05484 5.09436 5.19773 5.26047 5.29412 5.34258 5.38847 5.59820 5.74422 5.87599 6.35117 6.47808 6.66686 6.93366 7.32783 7.73921 8.32299 9.05161 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.029129 B = 0.003030 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.021855 B = 9239.773506 C = 9630.573391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C 0.161 3.839 4 C -0.319 4.319 5 C 0.596 3.404 6 O -0.579 6.579 7 N -0.703 5.703 8 C 0.158 3.842 9 H 0.082 0.918 10 C -0.129 4.129 11 C 0.151 3.849 12 N -0.614 5.614 13 C -0.332 4.332 14 H 0.064 0.936 15 C -0.082 4.082 16 N -0.950 5.950 17 Si 1.118 2.882 18 H -0.286 1.286 19 H -0.270 1.270 20 H -0.297 1.297 21 C 0.150 3.850 22 H 0.054 0.946 23 C -0.143 4.143 24 C 0.085 3.915 25 N -0.321 5.321 26 N -0.360 5.360 27 C 0.083 3.917 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.003 0.997 38 H 0.255 0.745 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.212 0.788 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 -2.851 26.903 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C 0.027 3.973 4 C -0.334 4.334 5 C 0.385 3.615 6 O -0.460 6.460 7 N -0.353 5.353 8 C 0.052 3.948 9 H 0.100 0.900 10 C -0.168 4.168 11 C 0.025 3.975 12 N -0.340 5.340 13 C -0.460 4.460 14 H 0.082 0.918 15 C -0.277 4.277 16 N -0.593 5.593 17 Si 0.943 3.057 18 H -0.213 1.213 19 H -0.195 1.195 20 H -0.224 1.224 21 C 0.043 3.957 22 H 0.071 0.929 23 C -0.202 4.202 24 C -0.102 4.102 25 N -0.140 5.140 26 N -0.138 5.138 27 C -0.056 4.056 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.247 0.753 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.021 0.979 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.228 0.772 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.080 -2.342 26.458 26.562 hybrid contribution 0.586 -0.705 0.156 0.930 sum 0.506 -3.048 26.614 26.793 Atomic orbital electron populations 1.21604 0.92887 1.03292 1.01569 1.20488 0.97424 0.87356 1.05315 1.21821 0.93782 0.95416 0.86299 1.19975 1.22966 0.97716 0.92761 1.17456 0.75819 0.83857 0.84319 1.90706 1.48878 1.21685 1.84775 1.45556 1.68047 1.17320 1.04416 1.21610 0.94444 0.98642 0.80085 0.90031 1.23021 0.97141 1.01859 0.94793 1.21319 0.87453 0.94802 0.93958 1.44802 1.10737 1.62257 1.16211 1.19966 1.16262 1.19875 0.89916 0.91795 1.27088 0.99236 1.03443 0.97959 1.70857 1.47807 1.02195 1.38458 0.82803 0.76838 0.72553 0.73512 1.21292 1.19510 1.22416 1.21249 0.91305 0.95764 0.87354 0.92872 1.22066 0.98212 0.99250 1.00694 1.24403 0.96305 0.97408 0.92058 1.77139 1.22931 1.00433 1.13523 1.48687 1.48630 1.08950 1.07567 1.22394 1.05113 1.02980 0.75153 0.91577 0.94495 0.90017 0.89256 0.87527 0.75295 0.90706 0.90382 0.95753 0.97939 0.93442 0.93986 0.91095 0.95048 0.77157 0.88657 0.87985 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.07 -1.13 5.39 29.85 0.16 -0.97 16 3 C 0.16 3.35 6.26 42.14 0.26 3.62 16 4 C -0.32 -7.84 6.13 -20.15 -0.12 -7.96 16 5 C 0.60 17.62 7.81 86.66 0.68 18.30 16 6 O -0.58 -20.52 14.48 -4.04 -0.06 -20.58 16 7 N -0.70 -19.79 5.18 -440.16 -2.28 -22.06 16 8 C 0.16 5.60 2.84 46.18 0.13 5.73 16 9 H 0.08 3.18 7.26 -2.39 -0.02 3.16 16 10 C -0.13 -4.88 6.76 31.91 0.22 -4.67 16 11 C 0.15 7.32 5.29 86.78 0.46 7.77 16 12 N -0.61 -30.88 3.02 -668.72 -2.02 -32.90 16 13 C -0.33 -18.55 9.62 84.03 0.81 -17.75 16 14 H 0.06 3.53 7.96 -2.91 -0.02 3.51 16 15 C -0.08 -4.71 5.09 84.86 0.43 -4.28 16 16 N -0.95 -59.36 12.94 21.65 0.28 -59.08 16 17 Si 1.12 51.69 30.00 68.60 2.06 53.74 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 21 C 0.15 5.96 3.47 45.34 0.16 6.12 16 22 H 0.05 1.98 7.72 -2.39 -0.02 1.96 16 23 C -0.14 -5.50 9.15 71.98 0.66 -4.84 16 24 C 0.09 1.80 11.50 85.65 0.99 2.79 16 25 N -0.32 -7.04 12.50 -56.27 -0.70 -7.74 16 26 N -0.36 -6.45 3.98 -354.30 -1.41 -7.86 16 27 C 0.08 0.64 11.06 127.77 1.41 2.05 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 2.01 6.50 -2.39 -0.02 1.99 16 32 H 0.11 1.04 7.70 -2.39 -0.02 1.03 16 33 H 0.41 9.30 7.32 -92.71 -0.68 8.63 16 34 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 36 H 0.02 1.29 7.96 -2.39 -0.02 1.27 16 37 H 0.00 0.15 6.80 -2.39 -0.02 0.13 16 38 H 0.26 16.25 6.02 -92.71 -0.56 15.69 16 39 H 0.04 1.71 8.02 -2.39 -0.02 1.69 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.21 3.12 7.50 -2.91 -0.02 3.10 16 43 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.11 0.34 7.62 -2.39 -0.02 0.32 16 Total: -1.00 -76.22 365.35 3.34 -72.88 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.52 Total: 19.10 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 6.95 Total: 4.49 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -6.13 Total: -129.65 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.06 Total: -20.58 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.06 Total: 53.74 kcal Total: -76.22 3.34 -72.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088699772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.043 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds