Wall clock time and date at job start Fri Apr 10 2020 17:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.99736 * 2 1 4 4 C 1.54335 * 109.98726 * 238.96428 * 2 1 3 5 5 H 1.09003 * 110.67268 * 337.04918 * 4 2 1 6 6 N 1.46503 * 110.84639 * 100.19903 * 4 2 1 7 7 C 1.34782 * 119.99986 * 200.14434 * 6 4 2 8 8 O 1.21288 * 119.99791 * 0.02562 * 7 6 4 9 9 C 1.50692 * 120.00237 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.47260 * 298.69090 * 9 7 6 11 11 C 1.53004 * 109.47154 * 58.69328 * 9 7 6 12 12 C 1.50703 * 109.47187 * 178.69249 * 9 7 6 13 13 C 1.34671 * 126.59429 * 244.22945 * 12 9 7 14 14 N 1.34117 * 108.02419 * 179.87344 * 13 12 9 15 15 C 1.30501 * 109.25522 * 0.40062 * 14 13 12 16 16 N 1.35041 * 108.70040 * 359.75422 * 15 14 13 17 17 H 0.96997 * 126.39837 * 180.02562 * 16 15 14 18 18 C 1.55163 * 103.02007 * 218.66397 * 4 2 1 19 19 C 1.54904 * 101.58031 * 35.30851 * 18 4 2 20 20 N 1.47018 * 109.88456 * 121.10209 * 2 1 3 21 21 C 1.36943 * 125.64486 * 298.39158 * 20 2 1 22 22 H 1.08000 * 119.99807 * 342.40789 * 21 20 2 23 23 C 1.38812 * 119.99947 * 162.40402 * 21 20 2 24 24 N 1.31618 * 119.99880 * 350.57440 * 23 21 20 25 25 Si 1.86798 * 119.99959 * 170.84834 * 23 21 20 26 26 H 1.48499 * 109.47215 * 264.78829 * 25 23 21 27 27 H 1.48501 * 109.46935 * 24.79137 * 25 23 21 28 28 H 1.48502 * 109.47095 * 144.78422 * 25 23 21 29 29 H 1.08999 * 109.46834 * 300.35528 * 1 2 3 30 30 H 1.08994 * 109.47380 * 60.35467 * 1 2 3 31 31 H 1.09001 * 109.47388 * 180.36035 * 1 2 3 32 32 H 0.96998 * 120.00632 * 20.14571 * 6 4 2 33 33 H 1.08998 * 109.46566 * 60.00447 * 10 9 7 34 34 H 1.09001 * 109.47224 * 179.97438 * 10 9 7 35 35 H 1.08993 * 109.47395 * 300.00096 * 10 9 7 36 36 H 1.09004 * 109.47051 * 60.00271 * 11 9 7 37 37 H 1.08995 * 109.47037 * 180.02562 * 11 9 7 38 38 H 1.08996 * 109.47086 * 300.00295 * 11 9 7 39 39 H 1.08005 * 125.98276 * 0.02564 * 13 12 9 40 40 H 1.08007 * 125.65249 * 179.73234 * 15 14 13 41 41 H 1.08995 * 111.00465 * 277.23425 * 18 4 2 42 42 H 1.09003 * 111.03421 * 153.39879 * 18 4 2 43 43 H 1.08995 * 110.36625 * 204.15330 * 19 18 4 44 44 H 1.09003 * 110.36548 * 81.82983 * 19 18 4 45 45 H 0.97002 * 119.99641 * 180.27053 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2428 5 1 1.3065 -1.4405 -1.6226 6 7 2.4636 0.1969 -2.2863 7 6 2.5637 -0.2145 -3.5659 8 8 2.3172 -1.3667 -3.8535 9 6 2.9808 0.7573 -4.6394 10 6 1.9609 1.8948 -4.7219 11 6 4.3582 1.3309 -4.3009 12 6 3.0457 0.0439 -5.9652 13 6 4.1454 -0.1558 -6.7165 14 7 3.7800 -0.8314 -7.8159 15 6 2.4940 -1.0507 -7.7786 16 7 1.9972 -0.5207 -6.6403 17 1 1.0706 -0.5373 -6.3542 18 6 3.2863 -1.5184 -0.6916 19 6 2.8099 -1.8826 0.7367 20 7 2.0300 -0.7142 1.1838 21 6 1.8039 -0.3565 2.4862 22 1 1.4698 0.6432 2.7214 23 6 2.0039 -1.2790 3.5040 24 7 2.2293 -2.5425 3.2121 25 14 1.9457 -0.7286 5.2881 26 1 3.3234 -0.4435 5.7634 27 1 1.1192 0.5000 5.4003 28 1 1.3481 -1.8047 6.1189 29 1 -0.3633 0.5193 0.8868 30 1 -0.3634 0.5083 -0.8931 31 1 -0.3634 -1.0276 0.0065 32 1 2.6604 1.1185 -2.0564 33 1 1.9140 2.4109 -3.7629 34 1 2.2628 2.5980 -5.4981 35 1 0.9796 1.4863 -4.9630 36 1 5.0849 0.5205 -4.2423 37 1 4.6597 2.0342 -5.0771 38 1 4.3113 1.8469 -3.3420 39 1 5.1467 0.1690 -6.4746 40 1 1.9218 -1.5697 -8.5334 41 1 4.1669 -0.8769 -0.6581 42 1 3.4812 -2.4156 -1.2792 43 1 3.6655 -2.0413 1.3930 44 1 2.1801 -2.7719 0.7113 45 1 2.3652 -3.1878 3.9235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088981670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:27 Heat of formation + Delta-G solvation = 37.583609 kcal Electronic energy + Delta-G solvation = -25974.778415 eV Core-core repulsion = 22414.581423 eV Total energy + Delta-G solvation = -3560.196992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.27498 -39.94739 -37.73911 -35.49810 -34.02430 -32.49884 -31.95045 -30.43321 -29.02475 -28.47718 -27.57467 -25.15740 -24.03966 -23.65556 -21.81868 -21.05880 -20.33564 -20.08572 -19.54505 -18.00559 -16.84654 -16.65800 -16.01002 -15.11636 -14.81774 -14.73535 -14.44358 -14.27420 -14.12281 -13.95100 -13.58449 -13.47783 -12.99102 -12.77933 -12.52123 -12.43785 -12.16626 -12.10157 -11.89891 -11.60399 -11.52199 -11.14411 -10.96858 -10.82291 -10.61240 -10.39912 -10.13085 -10.07615 -10.03517 -9.91548 -9.74938 -9.59811 -8.74456 -8.61871 -8.46403 -6.83299 -5.80929 -3.17866 1.93431 2.66334 3.03435 3.04867 3.33141 3.36368 3.41960 3.43383 4.23485 4.43435 4.51683 4.60222 4.65518 4.82177 5.20427 5.24334 5.26493 5.31889 5.37946 5.42113 5.45934 5.48066 5.54676 5.61256 5.74533 5.77027 5.83340 6.07729 6.13974 6.18236 6.26101 6.29964 6.46076 6.56994 6.63205 6.64439 6.85692 7.07035 7.27975 7.37236 7.56632 7.64253 7.71786 7.97792 8.20404 8.30576 9.11997 9.74168 10.43247 11.31985 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.032507 B = 0.003080 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.152317 B = 9087.436935 C = 9230.714684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.137 3.863 5 H 0.091 0.909 6 N -0.711 5.711 7 C 0.518 3.482 8 O -0.535 6.535 9 C -0.007 4.007 10 C -0.141 4.141 11 C -0.139 4.139 12 C 0.011 3.989 13 C -0.021 4.021 14 N -0.496 5.496 15 C 0.182 3.818 16 N -0.552 5.552 17 H 0.418 0.582 18 C -0.153 4.153 19 C 0.175 3.825 20 N -0.591 5.591 21 C -0.232 4.232 22 H 0.074 0.926 23 C -0.001 4.001 24 N -0.912 5.912 25 Si 0.910 3.090 26 H -0.288 1.288 27 H -0.280 1.280 28 H -0.291 1.291 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.167 0.833 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 9.304 -17.900 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.052 0.948 4 C 0.033 3.967 5 H 0.109 0.891 6 N -0.361 5.361 7 C 0.303 3.697 8 O -0.412 6.412 9 C -0.012 4.012 10 C -0.199 4.199 11 C -0.197 4.197 12 C -0.106 4.106 13 C -0.169 4.169 14 N -0.215 5.215 15 C -0.102 4.102 16 N -0.153 5.153 17 H 0.256 0.744 18 C -0.193 4.193 19 C 0.050 3.950 20 N -0.317 5.317 21 C -0.361 4.361 22 H 0.092 0.908 23 C -0.199 4.199 24 N -0.557 5.557 25 Si 0.740 3.260 26 H -0.215 1.215 27 H -0.205 1.205 28 H -0.217 1.217 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.232 0.768 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.185 0.815 40 H 0.222 0.778 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.275 8.094 -18.525 20.218 hybrid contribution -1.054 0.708 1.919 2.301 sum -0.779 8.802 -16.606 18.811 Atomic orbital electron populations 1.22215 0.97822 1.01449 0.99798 1.21032 0.92513 0.94789 0.86950 0.94779 1.22123 0.97350 0.90791 0.86484 0.89145 1.46057 1.68914 1.14148 1.06980 1.20338 0.77492 0.88607 0.83292 1.90718 1.49406 1.18955 1.82074 1.19257 0.98974 0.94223 0.88725 1.21905 0.97580 0.96893 1.03523 1.21858 0.93557 1.01619 1.02637 1.20470 0.88794 1.05195 0.96187 1.22017 0.98205 1.03941 0.92745 1.70260 1.10772 1.17026 1.23433 1.24880 0.91564 1.02781 0.90928 1.43094 1.10832 1.43275 1.18081 0.74442 1.23361 0.96839 0.99501 0.99568 1.21321 0.95098 0.89947 0.88622 1.44463 1.58013 1.29075 1.00099 1.18917 1.41123 0.95467 0.80581 0.90835 1.24941 1.01775 0.95030 0.98173 1.69956 1.53734 1.00810 1.31203 0.86150 0.77654 0.77488 0.84724 1.21547 1.20518 1.21724 0.92529 0.94673 0.92933 0.76809 0.90939 0.90888 0.92465 0.91148 0.90685 0.91015 0.81528 0.77795 0.91993 0.91856 0.92259 0.94739 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.16 2.98 3.48 -66.95 -0.23 2.74 16 3 H 0.03 0.63 7.69 -51.93 -0.40 0.23 16 4 C 0.14 2.37 2.76 -66.09 -0.18 2.19 16 5 H 0.09 1.72 7.40 -51.93 -0.38 1.33 16 6 N -0.71 -9.46 4.99 -52.02 -0.26 -9.72 16 7 C 0.52 7.03 6.47 -10.99 -0.07 6.95 16 8 O -0.54 -9.44 15.62 5.55 0.09 -9.36 16 9 C -0.01 -0.07 0.84 -156.81 -0.13 -0.20 16 10 C -0.14 -1.06 8.36 37.16 0.31 -0.75 16 11 C -0.14 -1.12 7.30 37.16 0.27 -0.85 16 12 C 0.01 0.12 4.97 -81.60 -0.41 -0.28 16 13 C -0.02 -0.26 10.85 -17.82 -0.19 -0.45 16 14 N -0.50 -6.59 11.25 -14.66 -0.16 -6.75 16 15 C 0.18 1.91 13.04 -90.38 -1.18 0.73 16 16 N -0.55 -5.66 5.97 -10.29 -0.06 -5.72 16 17 H 0.42 3.50 8.96 -40.82 -0.37 3.14 16 18 C -0.15 -2.93 6.77 -24.58 -0.17 -3.09 16 19 C 0.18 4.16 5.35 -2.53 -0.01 4.15 16 20 N -0.59 -14.32 3.12 -162.58 -0.51 -14.82 16 21 C -0.23 -6.19 9.80 -15.06 -0.15 -6.34 16 22 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 23 C 0.00 -0.03 5.38 -17.43 -0.09 -0.13 16 24 N -0.91 -26.30 11.00 55.49 0.61 -25.68 16 25 Si 0.91 21.51 29.56 -169.99 -5.03 16.49 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 4.29 7.16 -40.82 -0.29 4.00 16 33 H 0.07 0.47 7.64 -51.93 -0.40 0.07 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.64 7.81 -51.93 -0.41 0.23 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.07 0.50 7.49 -51.93 -0.39 0.11 16 39 H 0.17 1.74 7.32 -52.48 -0.38 1.35 16 40 H 0.21 1.31 8.06 -52.48 -0.42 0.88 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.55 7.44 -51.93 -0.39 1.16 16 44 H 0.03 0.90 7.91 -51.93 -0.41 0.49 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -33.74 363.37 -8.90 -42.64 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.16 Total: 5.25 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.90 Total: 2.21 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.38 Total: -62.70 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.74 -8.90 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088981670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.220 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds