Wall clock time and date at job start Fri Apr 10 2020 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.99736 * 2 1 4 4 C 1.54335 * 109.98726 * 238.96428 * 2 1 3 5 5 H 1.09003 * 110.67268 * 337.04918 * 4 2 1 6 6 N 1.46503 * 110.84639 * 100.19903 * 4 2 1 7 7 C 1.34782 * 119.99986 * 200.14434 * 6 4 2 8 8 O 1.21288 * 119.99791 * 0.02562 * 7 6 4 9 9 C 1.50692 * 120.00237 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.47260 * 298.69090 * 9 7 6 11 11 C 1.53004 * 109.47154 * 58.69328 * 9 7 6 12 12 C 1.50703 * 109.47187 * 178.69249 * 9 7 6 13 13 C 1.34671 * 126.59429 * 244.22945 * 12 9 7 14 14 N 1.34117 * 108.02419 * 179.87344 * 13 12 9 15 15 C 1.30501 * 109.25522 * 0.40062 * 14 13 12 16 16 N 1.35041 * 108.70040 * 359.75422 * 15 14 13 17 17 H 0.96997 * 126.39837 * 180.02562 * 16 15 14 18 18 C 1.55163 * 103.02007 * 218.66397 * 4 2 1 19 19 C 1.54904 * 101.58031 * 35.30851 * 18 4 2 20 20 N 1.47018 * 109.88456 * 121.10209 * 2 1 3 21 21 C 1.36943 * 125.64486 * 298.39158 * 20 2 1 22 22 H 1.08000 * 119.99807 * 342.40789 * 21 20 2 23 23 C 1.38812 * 119.99947 * 162.40402 * 21 20 2 24 24 N 1.31618 * 119.99880 * 350.57440 * 23 21 20 25 25 Si 1.86798 * 119.99959 * 170.84834 * 23 21 20 26 26 H 1.48499 * 109.47215 * 264.78829 * 25 23 21 27 27 H 1.48501 * 109.46935 * 24.79137 * 25 23 21 28 28 H 1.48502 * 109.47095 * 144.78422 * 25 23 21 29 29 H 1.08999 * 109.46834 * 300.35528 * 1 2 3 30 30 H 1.08994 * 109.47380 * 60.35467 * 1 2 3 31 31 H 1.09001 * 109.47388 * 180.36035 * 1 2 3 32 32 H 0.96998 * 120.00632 * 20.14571 * 6 4 2 33 33 H 1.08998 * 109.46566 * 60.00447 * 10 9 7 34 34 H 1.09001 * 109.47224 * 179.97438 * 10 9 7 35 35 H 1.08993 * 109.47395 * 300.00096 * 10 9 7 36 36 H 1.09004 * 109.47051 * 60.00271 * 11 9 7 37 37 H 1.08995 * 109.47037 * 180.02562 * 11 9 7 38 38 H 1.08996 * 109.47086 * 300.00295 * 11 9 7 39 39 H 1.08005 * 125.98276 * 0.02564 * 13 12 9 40 40 H 1.08007 * 125.65249 * 179.73234 * 15 14 13 41 41 H 1.08995 * 111.00465 * 277.23425 * 18 4 2 42 42 H 1.09003 * 111.03421 * 153.39879 * 18 4 2 43 43 H 1.08995 * 110.36625 * 204.15330 * 19 18 4 44 44 H 1.09003 * 110.36548 * 81.82983 * 19 18 4 45 45 H 0.97002 * 119.99641 * 180.27053 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2428 5 1 1.3065 -1.4405 -1.6226 6 7 2.4636 0.1969 -2.2863 7 6 2.5637 -0.2145 -3.5659 8 8 2.3172 -1.3667 -3.8535 9 6 2.9808 0.7573 -4.6394 10 6 1.9609 1.8948 -4.7219 11 6 4.3582 1.3309 -4.3009 12 6 3.0457 0.0439 -5.9652 13 6 4.1454 -0.1558 -6.7165 14 7 3.7800 -0.8314 -7.8159 15 6 2.4940 -1.0507 -7.7786 16 7 1.9972 -0.5207 -6.6403 17 1 1.0706 -0.5373 -6.3542 18 6 3.2863 -1.5184 -0.6916 19 6 2.8099 -1.8826 0.7367 20 7 2.0300 -0.7142 1.1838 21 6 1.8039 -0.3565 2.4862 22 1 1.4698 0.6432 2.7214 23 6 2.0039 -1.2790 3.5040 24 7 2.2293 -2.5425 3.2121 25 14 1.9457 -0.7286 5.2881 26 1 3.3234 -0.4435 5.7634 27 1 1.1192 0.5000 5.4003 28 1 1.3481 -1.8047 6.1189 29 1 -0.3633 0.5193 0.8868 30 1 -0.3634 0.5083 -0.8931 31 1 -0.3634 -1.0276 0.0065 32 1 2.6604 1.1185 -2.0564 33 1 1.9140 2.4109 -3.7629 34 1 2.2628 2.5980 -5.4981 35 1 0.9796 1.4863 -4.9630 36 1 5.0849 0.5205 -4.2423 37 1 4.6597 2.0342 -5.0771 38 1 4.3113 1.8469 -3.3420 39 1 5.1467 0.1690 -6.4746 40 1 1.9218 -1.5697 -8.5334 41 1 4.1669 -0.8769 -0.6581 42 1 3.4812 -2.4156 -1.2792 43 1 3.6655 -2.0413 1.3930 44 1 2.1801 -2.7719 0.7113 45 1 2.3652 -3.1878 3.9235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088981670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:26 Heat of formation + Delta-G solvation = 15.260867 kcal Electronic energy + Delta-G solvation = -25975.746402 eV Core-core repulsion = 22414.581423 eV Total energy + Delta-G solvation = -3561.164979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.10192 -41.11961 -39.28653 -36.39439 -35.55068 -33.75834 -33.28603 -32.07637 -30.55030 -29.52573 -28.18618 -26.67286 -25.87314 -24.63778 -22.80398 -22.19364 -21.72934 -21.52676 -20.63015 -18.99435 -18.68254 -17.70098 -17.30106 -16.63659 -16.09023 -15.86475 -15.83345 -15.46519 -15.20962 -14.93160 -14.84951 -14.38016 -14.35975 -14.04444 -13.92108 -13.53726 -13.29400 -13.20312 -12.99780 -12.91263 -12.79062 -12.59303 -12.55387 -12.27694 -12.18153 -12.05255 -11.92314 -11.68266 -11.54138 -11.02186 -10.88719 -10.76051 -10.65044 -10.03108 -9.30701 -8.82378 -7.87659 -5.26104 1.09967 1.47816 1.48567 1.57744 1.59867 2.08415 2.29008 2.32941 2.52130 3.33520 3.45939 3.54747 3.76020 3.82329 3.89681 3.93865 3.95436 4.08541 4.20757 4.49607 4.53538 4.62162 4.62819 4.65837 4.72294 4.74009 4.80988 4.87467 4.94112 4.97606 5.03782 5.13100 5.18755 5.21676 5.37479 5.39185 5.41911 5.57063 5.63719 5.67228 5.80573 6.21854 6.51980 6.58891 7.06829 7.15466 7.23544 7.75555 8.43994 9.24801 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.032507 B = 0.003080 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.152317 B = 9087.436935 C = 9230.714684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.151 3.849 3 H 0.060 0.940 4 C 0.156 3.844 5 H 0.074 0.926 6 N -0.697 5.697 7 C 0.520 3.480 8 O -0.578 6.578 9 C 0.004 3.996 10 C -0.139 4.139 11 C -0.140 4.140 12 C 0.001 3.999 13 C -0.041 4.041 14 N -0.536 5.536 15 C 0.185 3.815 16 N -0.550 5.550 17 H 0.426 0.574 18 C -0.138 4.138 19 C 0.184 3.816 20 N -0.610 5.610 21 C -0.234 4.234 22 H 0.083 0.917 23 C -0.062 4.062 24 N -0.948 5.948 25 Si 0.974 3.026 26 H -0.288 1.288 27 H -0.264 1.264 28 H -0.300 1.300 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.176 0.824 40 H 0.239 0.761 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.026 0.974 44 H -0.002 1.002 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 12.174 -19.031 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.045 3.955 3 H 0.077 0.923 4 C 0.050 3.950 5 H 0.092 0.908 6 N -0.349 5.349 7 C 0.306 3.694 8 O -0.457 6.457 9 C 0.000 4.000 10 C -0.197 4.197 11 C -0.198 4.198 12 C -0.116 4.116 13 C -0.188 4.188 14 N -0.255 5.255 15 C -0.099 4.099 16 N -0.152 5.152 17 H 0.265 0.735 18 C -0.177 4.177 19 C 0.058 3.942 20 N -0.336 5.336 21 C -0.363 4.363 22 H 0.101 0.899 23 C -0.256 4.256 24 N -0.596 5.596 25 Si 0.803 3.197 26 H -0.215 1.215 27 H -0.188 1.188 28 H -0.227 1.227 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.252 0.748 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.194 0.806 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.016 0.984 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.165 11.041 -19.678 22.564 hybrid contribution -0.935 -0.196 2.177 2.377 sum -1.100 10.845 -17.501 20.618 Atomic orbital electron populations 1.22105 0.96807 1.00326 1.01184 1.21240 0.93230 0.95369 0.85670 0.92285 1.21630 0.95724 0.90852 0.86779 0.90797 1.45802 1.68687 1.14248 1.06140 1.21026 0.76100 0.88618 0.83620 1.90709 1.51140 1.21133 1.82696 1.19261 1.00727 0.93733 0.86327 1.21947 0.96577 0.96087 1.05058 1.21931 0.91932 1.01629 1.04277 1.20719 0.88832 1.05386 0.96682 1.22309 0.99092 1.04390 0.93045 1.70241 1.12348 1.18444 1.24485 1.25584 0.91207 1.01786 0.91346 1.43156 1.11183 1.42884 1.17943 0.73473 1.23160 0.98112 1.00039 0.96419 1.21019 0.93288 0.89137 0.90770 1.44702 1.58665 1.29213 1.00978 1.19304 1.39443 0.95703 0.81851 0.89909 1.25749 1.02529 0.95144 1.02159 1.70155 1.55714 1.01908 1.31808 0.85128 0.77542 0.77209 0.79856 1.21511 1.18792 1.22661 0.93524 0.90825 0.95303 0.74776 0.89301 0.89367 0.92628 0.92507 0.88660 0.89387 0.80649 0.74480 0.90551 0.92070 0.95586 0.98446 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 9.14 71.98 0.66 -4.37 16 2 C 0.15 5.55 3.48 45.35 0.16 5.70 16 3 H 0.06 1.93 7.69 -2.39 -0.02 1.91 16 4 C 0.16 5.19 2.76 46.19 0.13 5.32 16 5 H 0.07 2.77 7.40 -2.39 -0.02 2.75 16 6 N -0.70 -16.60 4.99 -436.88 -2.18 -18.78 16 7 C 0.52 12.96 6.47 87.65 0.57 13.53 16 8 O -0.58 -19.80 15.62 -3.06 -0.05 -19.85 16 9 C 0.00 0.07 0.84 -53.67 -0.05 0.03 16 10 C -0.14 -1.55 8.36 71.98 0.60 -0.95 16 11 C -0.14 -1.82 7.30 71.98 0.53 -1.29 16 12 C 0.00 0.03 4.97 40.95 0.20 0.23 16 13 C -0.04 -0.96 10.85 83.53 0.91 -0.05 16 14 N -0.54 -13.74 11.25 -200.31 -2.25 -15.99 16 15 C 0.18 3.58 13.04 180.26 2.35 5.93 16 16 N -0.55 -10.36 5.97 -186.48 -1.11 -11.47 16 17 H 0.43 6.38 8.96 -92.71 -0.83 5.55 16 18 C -0.14 -5.24 6.77 31.99 0.22 -5.02 16 19 C 0.18 9.02 5.35 86.85 0.46 9.49 16 20 N -0.61 -29.61 3.12 -668.27 -2.08 -31.69 16 21 C -0.23 -12.44 9.80 84.03 0.82 -11.61 16 22 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 23 C -0.06 -3.44 5.38 84.86 0.46 -2.98 16 24 N -0.95 -56.77 11.00 21.65 0.24 -56.53 16 25 Si 0.97 44.62 29.56 68.60 2.03 46.65 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H 0.05 1.70 8.02 -2.39 -0.02 1.68 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.41 7.22 7.16 -92.71 -0.66 6.56 16 33 H 0.09 0.72 7.64 -2.39 -0.02 0.70 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.91 7.81 -2.38 -0.02 0.89 16 37 H 0.09 0.88 8.09 -2.39 -0.02 0.87 16 38 H 0.09 0.86 7.49 -2.39 -0.02 0.84 16 39 H 0.18 3.50 7.32 -2.91 -0.02 3.48 16 40 H 0.24 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.08 2.68 8.14 -2.39 -0.02 2.67 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.03 1.42 7.44 -2.39 -0.02 1.40 16 44 H 0.00 -0.14 7.91 -2.39 -0.02 -0.16 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -75.83 363.37 2.11 -73.72 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.49 Total: 20.00 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 8.02 Total: 13.94 kcal Atomic # 7 Polarization: -127.07 SS G_CDS: -7.39 Total: -134.46 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -75.83 2.11 -73.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088981670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.981 kcal (2) G-P(sol) polarization free energy of solvation -75.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds