Wall clock time and date at job start Fri Apr 10 2020 17:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 H 0.96999 * 126.03826 * 180.22860 * 4 3 2 6 6 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 7 7 C 1.50703 * 126.12821 * 179.90663 * 6 4 3 8 8 C 1.35310 * 107.74594 * 359.64128 * 6 4 3 9 9 C 1.50706 * 126.04281 * 180.25420 * 8 6 4 10 10 C 1.50689 * 109.47334 * 89.99685 * 9 8 6 11 11 O 1.21283 * 120.00494 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00170 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00420 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.64224 * 325.70791 * 13 12 10 15 15 C 1.55164 * 110.71692 * 88.84232 * 13 12 10 16 16 C 1.54909 * 101.57862 * 153.86529 * 15 13 12 17 17 N 1.47427 * 104.83444 * 322.99488 * 16 15 13 18 18 C 1.36936 * 125.64484 * 204.17041 * 17 16 15 19 19 H 1.07998 * 119.99734 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00192 * 359.97098 * 18 17 16 21 21 N 1.31614 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46933 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47381 * 119.99631 * 22 20 18 25 25 H 1.48506 * 109.46566 * 239.99664 * 22 20 18 26 26 C 1.47308 * 108.73538 * 24.28110 * 17 16 15 27 27 H 1.09008 * 109.85191 * 239.38964 * 26 17 16 28 28 C 1.53002 * 110.06437 * 118.13302 * 26 17 16 29 29 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 30 30 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 31 31 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 32 32 H 1.09002 * 109.47152 * 269.68605 * 7 6 4 33 33 H 1.09001 * 109.46980 * 149.68706 * 7 6 4 34 34 H 1.09004 * 109.47113 * 29.68687 * 7 6 4 35 35 H 1.08997 * 109.46991 * 209.99910 * 9 8 6 36 36 H 1.08996 * 109.46546 * 329.99206 * 9 8 6 37 37 H 0.97005 * 119.99474 * 0.02562 * 12 10 9 38 38 H 1.08999 * 111.00405 * 271.93668 * 15 13 12 39 39 H 1.08996 * 111.00395 * 35.75693 * 15 13 12 40 40 H 1.09003 * 110.36351 * 81.83175 * 16 15 13 41 41 H 1.09001 * 110.36798 * 204.15093 * 16 15 13 42 42 H 0.97003 * 120.00326 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.46687 * 302.26498 * 28 26 17 44 44 H 1.09001 * 109.47026 * 62.26476 * 28 26 17 45 45 H 1.09005 * 109.47355 * 182.26940 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7154 -0.0013 7 6 4.8350 -1.5990 -0.0015 8 6 2.3272 -1.1331 -0.0009 9 6 1.8599 -2.5659 -0.0006 10 6 1.7047 -3.0434 1.4202 11 8 1.9490 -2.2940 2.3420 12 7 1.2944 -4.3033 1.6667 13 6 1.1441 -4.7678 3.0479 14 1 1.8974 -4.3122 3.6906 15 6 -0.2834 -4.4661 3.5761 16 6 -0.4530 -5.5626 4.6572 17 7 0.2190 -6.7501 4.0990 18 6 -0.0461 -8.0501 4.4380 19 1 0.5036 -8.8531 3.9696 20 6 -1.0213 -8.3358 5.3836 21 7 -1.6908 -7.3572 5.9549 22 14 -1.3824 -10.1093 5.8465 23 1 -0.4990 -11.0138 5.0676 24 1 -1.1336 -10.3026 7.2976 25 1 -2.8020 -10.4211 5.5417 26 6 1.2249 -6.3073 3.1182 27 1 1.0023 -6.7353 2.1407 28 6 2.6227 -6.7348 3.5703 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 5.1291 -1.8123 -1.0292 33 1 4.6077 -2.5329 0.5126 34 1 5.6513 -1.0909 0.5120 35 1 0.9009 -2.6353 -0.5141 36 1 2.5931 -3.1871 -0.5148 37 1 1.0994 -4.9028 0.9294 38 1 -0.3343 -3.4709 4.0177 39 1 -1.0246 -4.5787 2.7850 40 1 0.0275 -5.2565 5.5865 41 1 -1.5100 -5.7689 4.8257 42 1 -2.3720 -7.5568 6.6160 43 1 2.8287 -6.3184 4.5564 44 1 2.6724 -7.8226 3.6176 45 1 3.3628 -6.3678 2.8591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089034933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:29 Heat of formation + Delta-G solvation = 51.377444 kcal Electronic energy + Delta-G solvation = -25496.550282 eV Core-core repulsion = 21936.951436 eV Total energy + Delta-G solvation = -3559.598846 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49347 -39.43620 -37.46156 -33.91496 -33.54834 -33.05924 -31.94247 -30.36068 -29.52061 -28.48325 -27.67522 -26.29433 -24.40009 -23.96039 -20.91831 -20.26609 -20.06465 -19.81409 -19.08234 -17.42184 -16.89012 -16.66944 -15.78137 -15.08043 -15.01693 -14.69548 -14.07193 -13.91717 -13.70086 -13.53555 -13.42780 -13.23040 -13.06175 -12.76608 -12.53199 -12.44428 -12.20532 -12.12485 -11.92984 -11.69218 -11.54778 -11.12447 -10.85897 -10.83231 -10.58563 -10.49686 -10.37159 -10.06327 -9.73486 -9.62091 -9.50683 -9.29381 -8.66866 -8.52787 -8.43917 -6.86818 -5.65014 -3.07881 1.76338 2.57737 2.75740 2.93345 3.39187 3.44134 3.47159 3.60863 4.48297 4.48596 4.55776 4.82602 4.98023 5.07632 5.19100 5.21518 5.29659 5.39805 5.43324 5.49038 5.57569 5.60398 5.62939 5.66564 5.84667 5.86444 5.89232 6.04904 6.13983 6.28017 6.32442 6.39651 6.56293 6.60388 6.64163 6.75424 6.89166 7.15898 7.18951 7.53909 7.62119 7.63215 7.84538 7.86866 8.35500 8.56345 9.21048 9.81923 10.46116 11.38233 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.002946 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.729558 B = 9502.834109 C =10037.644940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.096 3.904 3 N -0.300 5.300 4 N -0.478 5.478 5 H 0.436 0.564 6 C 0.101 3.899 7 C -0.094 4.094 8 C -0.214 4.214 9 C -0.062 4.062 10 C 0.509 3.491 11 O -0.535 6.535 12 N -0.720 5.720 13 C 0.136 3.864 14 H 0.089 0.911 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.596 5.596 18 C -0.219 4.219 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.154 3.846 27 H 0.036 0.964 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.397 0.603 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.013 0.987 41 H 0.109 0.891 42 H 0.252 0.748 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.629 11.224 -15.603 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 N -0.123 5.123 4 N -0.186 5.186 5 H 0.279 0.721 6 C -0.028 4.028 7 C -0.152 4.152 8 C -0.226 4.226 9 C -0.103 4.103 10 C 0.295 3.705 11 O -0.411 6.411 12 N -0.371 5.371 13 C 0.032 3.968 14 H 0.108 0.892 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.321 5.321 18 C -0.348 4.348 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.046 3.954 27 H 0.054 0.946 28 C -0.214 4.214 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.231 0.769 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.031 0.969 41 H 0.126 0.874 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.682 12.904 -14.775 21.876 hybrid contribution 0.262 -1.753 0.085 1.774 sum 9.944 11.151 -14.690 20.953 Atomic orbital electron populations 1.20208 0.86815 1.03002 1.03436 1.22146 0.96865 0.90121 0.97963 1.77250 0.86395 1.22266 1.26417 1.46042 1.07294 1.04721 1.60497 0.72070 1.20781 0.96803 0.84956 1.00247 1.20474 0.92956 0.98721 1.03097 1.19016 0.91296 0.94752 1.17495 1.19920 1.03341 0.92446 0.94611 1.20625 0.76843 0.81687 0.91348 1.90697 1.49659 1.54449 1.46265 1.46112 1.68567 1.13319 1.09076 1.22095 0.98458 0.94749 0.81528 0.89248 1.23378 0.95172 1.00125 1.00507 1.21941 1.01583 0.82826 0.90860 1.44578 1.39349 1.02662 1.45530 1.19068 1.15645 0.81892 1.18154 0.90438 1.24788 0.99106 0.97642 0.99110 1.69810 1.27151 1.28933 1.30987 0.86019 0.77749 0.83869 0.77967 1.20565 1.21801 1.21777 1.21054 0.89989 0.90457 0.93861 0.94609 1.22228 0.97209 1.01487 1.00475 0.90121 0.90975 0.90489 0.90127 0.89534 0.91005 0.88310 0.88665 0.76942 0.92127 0.92020 0.96900 0.87380 0.93762 0.93007 0.92789 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.26 36.00 0.37 -0.42 16 2 C 0.10 1.24 7.22 -82.40 -0.59 0.65 16 3 N -0.30 -4.08 12.70 33.67 0.43 -3.65 16 4 N -0.48 -5.21 7.36 33.48 0.25 -4.96 16 5 H 0.44 3.27 8.96 -182.61 -1.64 1.63 16 6 C 0.10 1.09 7.21 -82.27 -0.59 0.50 16 7 C -0.09 -0.69 10.04 36.01 0.36 -0.33 16 8 C -0.21 -2.59 4.59 -105.05 -0.48 -3.07 16 9 C -0.06 -0.63 5.61 -29.04 -0.16 -0.79 16 10 C 0.51 7.19 7.82 -10.99 -0.09 7.11 16 11 O -0.53 -9.94 15.72 5.56 0.09 -9.86 16 12 N -0.72 -9.99 5.19 -52.03 -0.27 -10.26 16 13 C 0.14 2.44 2.79 -66.10 -0.18 2.26 16 14 H 0.09 1.76 7.33 -51.93 -0.38 1.37 16 15 C -0.15 -3.01 6.77 -24.58 -0.17 -3.18 16 16 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 17 N -0.60 -14.70 3.14 -162.35 -0.51 -15.21 16 18 C -0.22 -5.91 9.91 -15.06 -0.15 -6.06 16 19 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.15 3.03 3.49 -66.80 -0.23 2.80 16 27 H 0.04 0.68 7.70 -51.92 -0.40 0.28 16 28 C -0.15 -2.81 9.15 37.16 0.34 -2.47 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.65 7.26 -51.93 -0.38 0.27 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.70 7.78 -51.93 -0.40 0.30 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.81 7.26 -51.93 -0.38 0.43 16 36 H 0.10 0.72 7.77 -51.93 -0.40 0.31 16 37 H 0.40 4.42 8.34 -40.82 -0.34 4.08 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -34.45 367.04 -9.04 -43.48 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.39 Total: 3.90 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.69 Total: 0.30 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.45 Total: -60.08 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.45 -9.04 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089034933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.862 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds