Wall clock time and date at job start Fri Apr 10 2020 17:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 H 0.96999 * 126.03826 * 180.22860 * 4 3 2 6 6 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 7 7 C 1.50703 * 126.12821 * 179.90663 * 6 4 3 8 8 C 1.35310 * 107.74594 * 359.64128 * 6 4 3 9 9 C 1.50706 * 126.04281 * 180.25420 * 8 6 4 10 10 C 1.50689 * 109.47334 * 89.99685 * 9 8 6 11 11 O 1.21283 * 120.00494 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00170 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00420 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.64224 * 325.70791 * 13 12 10 15 15 C 1.55164 * 110.71692 * 88.84232 * 13 12 10 16 16 C 1.54909 * 101.57862 * 153.86529 * 15 13 12 17 17 N 1.47427 * 104.83444 * 322.99488 * 16 15 13 18 18 C 1.36936 * 125.64484 * 204.17041 * 17 16 15 19 19 H 1.07998 * 119.99734 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00192 * 359.97098 * 18 17 16 21 21 N 1.31614 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46933 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47381 * 119.99631 * 22 20 18 25 25 H 1.48506 * 109.46566 * 239.99664 * 22 20 18 26 26 C 1.47308 * 108.73538 * 24.28110 * 17 16 15 27 27 H 1.09008 * 109.85191 * 239.38964 * 26 17 16 28 28 C 1.53002 * 110.06437 * 118.13302 * 26 17 16 29 29 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 30 30 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 31 31 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 32 32 H 1.09002 * 109.47152 * 269.68605 * 7 6 4 33 33 H 1.09001 * 109.46980 * 149.68706 * 7 6 4 34 34 H 1.09004 * 109.47113 * 29.68687 * 7 6 4 35 35 H 1.08997 * 109.46991 * 209.99910 * 9 8 6 36 36 H 1.08996 * 109.46546 * 329.99206 * 9 8 6 37 37 H 0.97005 * 119.99474 * 0.02562 * 12 10 9 38 38 H 1.08999 * 111.00405 * 271.93668 * 15 13 12 39 39 H 1.08996 * 111.00395 * 35.75693 * 15 13 12 40 40 H 1.09003 * 110.36351 * 81.83175 * 16 15 13 41 41 H 1.09001 * 110.36798 * 204.15093 * 16 15 13 42 42 H 0.97003 * 120.00326 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.46687 * 302.26498 * 28 26 17 44 44 H 1.09001 * 109.47026 * 62.26476 * 28 26 17 45 45 H 1.09005 * 109.47355 * 182.26940 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7154 -0.0013 7 6 4.8350 -1.5990 -0.0015 8 6 2.3272 -1.1331 -0.0009 9 6 1.8599 -2.5659 -0.0006 10 6 1.7047 -3.0434 1.4202 11 8 1.9490 -2.2940 2.3420 12 7 1.2944 -4.3033 1.6667 13 6 1.1441 -4.7678 3.0479 14 1 1.8974 -4.3122 3.6906 15 6 -0.2834 -4.4661 3.5761 16 6 -0.4530 -5.5626 4.6572 17 7 0.2190 -6.7501 4.0990 18 6 -0.0461 -8.0501 4.4380 19 1 0.5036 -8.8531 3.9696 20 6 -1.0213 -8.3358 5.3836 21 7 -1.6908 -7.3572 5.9549 22 14 -1.3824 -10.1093 5.8465 23 1 -0.4990 -11.0138 5.0676 24 1 -1.1336 -10.3026 7.2976 25 1 -2.8020 -10.4211 5.5417 26 6 1.2249 -6.3073 3.1182 27 1 1.0023 -6.7353 2.1407 28 6 2.6227 -6.7348 3.5703 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 5.1291 -1.8123 -1.0292 33 1 4.6077 -2.5329 0.5126 34 1 5.6513 -1.0909 0.5120 35 1 0.9009 -2.6353 -0.5141 36 1 2.5931 -3.1871 -0.5148 37 1 1.0994 -4.9028 0.9294 38 1 -0.3343 -3.4709 4.0177 39 1 -1.0246 -4.5787 2.7850 40 1 0.0275 -5.2565 5.5865 41 1 -1.5100 -5.7689 4.8257 42 1 -2.3720 -7.5568 6.6160 43 1 2.8287 -6.3184 4.5564 44 1 2.6724 -7.8226 3.6176 45 1 3.3628 -6.3678 2.8591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089034933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:29 Heat of formation + Delta-G solvation = 27.344264 kcal Electronic energy + Delta-G solvation = -25497.592439 eV Core-core repulsion = 21936.951436 eV Total energy + Delta-G solvation = -3560.641003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.33114 -40.72377 -39.02752 -35.48412 -34.36260 -34.01345 -33.57299 -32.01300 -30.72796 -29.82924 -28.52923 -27.27213 -26.06112 -25.63375 -22.32804 -21.53323 -21.42465 -21.02968 -20.09151 -18.67956 -18.24404 -17.92855 -17.22359 -16.58214 -16.04175 -15.95319 -15.69868 -15.35050 -14.85594 -14.59257 -14.30216 -14.22274 -14.10363 -13.97325 -13.90209 -13.66839 -13.20607 -13.19462 -13.11964 -12.92223 -12.84667 -12.72234 -12.58330 -12.53223 -12.17117 -12.01028 -11.91242 -11.54362 -11.44114 -11.38288 -10.78938 -10.71030 -10.15499 -9.87987 -9.28641 -8.86973 -7.72143 -5.17057 0.94421 1.50084 1.50730 1.60716 1.66975 1.84552 2.02373 2.41781 2.58514 3.38663 3.62755 3.75438 3.79053 3.92313 4.01819 4.10424 4.19935 4.28001 4.33914 4.47213 4.54636 4.63409 4.67279 4.72112 4.74988 4.77611 4.85883 4.86678 4.99804 5.03093 5.10338 5.12357 5.13340 5.20551 5.28474 5.42976 5.53332 5.63035 5.73953 5.77180 5.83068 6.33215 6.48512 6.76846 6.78624 7.13848 7.48086 7.81981 8.45783 9.29917 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.002946 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.729558 B = 9502.834109 C =10037.644940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.077 3.923 3 N -0.338 5.338 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.103 3.897 7 C -0.092 4.092 8 C -0.240 4.240 9 C -0.051 4.051 10 C 0.512 3.488 11 O -0.582 6.582 12 N -0.707 5.707 13 C 0.155 3.845 14 H 0.072 0.928 15 C -0.138 4.138 16 C 0.158 3.842 17 N -0.615 5.615 18 C -0.223 4.223 19 H 0.087 0.913 20 C -0.071 4.071 21 N -0.952 5.952 22 Si 0.977 3.023 23 H -0.263 1.263 24 H -0.298 1.298 25 H -0.293 1.293 26 C 0.150 3.850 27 H 0.057 0.943 28 C -0.146 4.146 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.415 0.585 38 H 0.058 0.942 39 H 0.072 0.928 40 H -0.020 1.020 41 H 0.076 0.924 42 H 0.245 0.755 43 H 0.031 0.969 44 H 0.047 0.953 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.166 10.276 -18.381 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 N -0.162 5.162 4 N -0.185 5.185 5 H 0.293 0.707 6 C -0.027 4.027 7 C -0.150 4.150 8 C -0.252 4.252 9 C -0.091 4.091 10 C 0.300 3.700 11 O -0.461 6.461 12 N -0.359 5.359 13 C 0.049 3.951 14 H 0.090 0.910 15 C -0.177 4.177 16 C 0.032 3.968 17 N -0.340 5.340 18 C -0.352 4.352 19 H 0.105 0.895 20 C -0.263 4.263 21 N -0.603 5.603 22 Si 0.806 3.194 23 H -0.187 1.187 24 H -0.226 1.226 25 H -0.220 1.220 26 C 0.044 3.956 27 H 0.075 0.925 28 C -0.205 4.205 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.252 0.748 38 H 0.077 0.923 39 H 0.091 0.909 40 H -0.002 1.002 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.253 11.952 -17.622 24.083 hybrid contribution -0.138 -1.391 0.935 1.682 sum 11.115 10.561 -16.687 22.661 Atomic orbital electron populations 1.20275 0.85773 1.04478 1.02910 1.22606 0.97927 0.90562 0.97778 1.77173 0.87682 1.23379 1.27973 1.46114 1.07046 1.05300 1.60014 0.70725 1.21380 0.97832 0.85077 0.98402 1.20599 0.91741 0.97771 1.04924 1.19343 0.91734 0.95441 1.18634 1.19962 1.05705 0.91715 0.91747 1.21363 0.75185 0.80782 0.92621 1.90693 1.51629 1.55636 1.48176 1.45893 1.68436 1.13876 1.07695 1.21605 0.96329 0.93516 0.83665 0.90965 1.23171 0.97063 0.98205 0.99302 1.21645 0.99264 0.84566 0.91307 1.44827 1.40800 1.02074 1.46329 1.19448 1.14988 0.83210 1.17557 0.89527 1.25613 0.99611 1.01321 0.99781 1.70062 1.27816 1.30724 1.31656 0.85013 0.77414 0.79830 0.77110 1.18731 1.22599 1.22046 1.21282 0.89489 0.91476 0.93391 0.92507 1.22116 0.97091 1.00955 1.00363 0.91502 0.90241 0.88372 0.87423 0.89914 0.89873 0.85862 0.85185 0.74771 0.92290 0.90930 1.00241 0.90598 0.94566 0.95021 0.93433 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.26 71.23 0.73 -0.77 16 2 C 0.08 1.93 7.22 43.10 0.31 2.24 16 3 N -0.34 -9.04 12.70 -47.38 -0.60 -9.64 16 4 N -0.48 -9.79 7.36 -48.00 -0.35 -10.14 16 5 H 0.45 6.21 8.96 -213.33 -1.91 4.30 16 6 C 0.10 1.99 7.21 41.40 0.30 2.29 16 7 C -0.09 -1.05 10.04 71.24 0.71 -0.34 16 8 C -0.24 -5.26 4.59 -20.14 -0.09 -5.35 16 9 C -0.05 -0.84 5.61 29.10 0.16 -0.68 16 10 C 0.51 13.12 7.82 87.65 0.69 13.80 16 11 O -0.58 -21.01 15.72 -3.04 -0.05 -21.06 16 12 N -0.71 -17.44 5.19 -436.92 -2.27 -19.71 16 13 C 0.16 5.33 2.79 46.18 0.13 5.46 16 14 H 0.07 2.79 7.33 -2.39 -0.02 2.77 16 15 C -0.14 -5.44 6.77 31.99 0.22 -5.22 16 16 C 0.16 7.94 5.89 86.85 0.51 8.45 16 17 N -0.61 -30.37 3.14 -667.57 -2.10 -32.47 16 18 C -0.22 -11.98 9.91 84.03 0.83 -11.14 16 19 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 21 N -0.95 -56.78 10.09 21.65 0.22 -56.56 16 22 Si 0.98 45.02 29.55 68.60 2.03 47.05 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 C 0.15 5.62 3.49 45.29 0.16 5.78 16 27 H 0.06 1.94 7.70 -2.38 -0.02 1.92 16 28 C -0.15 -5.02 9.15 71.98 0.66 -4.36 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.44 7.26 -2.39 -0.02 1.42 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.06 7.78 -2.39 -0.02 1.04 16 34 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.12 1.48 7.26 -2.39 -0.02 1.46 16 36 H 0.13 1.28 7.77 -2.39 -0.02 1.26 16 37 H 0.41 7.43 8.34 -92.70 -0.77 6.66 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 40 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 41 H 0.08 4.33 5.87 -2.39 -0.01 4.32 16 42 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 45 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -77.60 367.04 0.99 -76.61 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -1.67 Total: 19.28 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.78 Total: 6.64 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -5.10 Total: -128.52 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -77.60 0.99 -76.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089034933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.956 kcal (2) G-P(sol) polarization free energy of solvation -77.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds