Wall clock time and date at job start Fri Apr 10 2020 17:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47129 * 2 1 4 4 C 1.35360 * 126.38533 * 85.31755 * 3 2 1 5 5 C 1.41502 * 105.50464 * 180.08846 * 4 3 2 6 6 C 1.47709 * 126.52124 * 179.90203 * 5 4 3 7 7 O 1.21579 * 119.99996 * 359.71133 * 6 5 4 8 8 N 1.34774 * 120.00416 * 179.71570 * 6 5 4 9 9 C 1.46497 * 120.00364 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.77516 * 328.23179 * 9 8 6 11 11 C 1.55158 * 110.72231 * 91.47455 * 9 8 6 12 12 C 1.54903 * 101.58055 * 153.86543 * 11 9 8 13 13 N 1.47427 * 104.83570 * 322.99195 * 12 11 9 14 14 C 1.36939 * 125.64727 * 204.16983 * 13 12 11 15 15 H 1.08002 * 119.99844 * 161.44831 * 14 13 12 16 16 C 1.38807 * 120.00220 * 341.43899 * 14 13 12 17 17 N 1.31619 * 120.00244 * 157.61411 * 16 14 13 18 18 Si 1.86806 * 119.99966 * 337.61332 * 16 14 13 19 19 H 1.48497 * 109.47000 * 84.53743 * 18 16 14 20 20 H 1.48500 * 109.47414 * 204.54010 * 18 16 14 21 21 H 1.48499 * 109.47120 * 324.53683 * 18 16 14 22 22 C 1.47016 * 108.70173 * 24.12579 * 13 12 11 23 23 H 1.09000 * 109.88985 * 239.36959 * 22 13 12 24 24 C 1.53004 * 109.88261 * 118.35853 * 22 13 12 25 25 N 1.31808 * 106.96336 * 359.64226 * 5 4 3 26 26 N 1.28475 * 110.07180 * 0.22788 * 25 5 4 27 27 C 1.46501 * 124.88443 * 180.02562 * 26 25 5 28 28 H 1.08995 * 109.47511 * 299.99999 * 1 2 3 29 29 H 1.09002 * 109.46969 * 60.00123 * 1 2 3 30 30 H 1.09006 * 109.46936 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47072 * 240.00055 * 2 1 3 32 32 H 1.09002 * 109.46969 * 119.99877 * 2 1 3 33 33 H 1.08009 * 127.25130 * 359.97422 * 4 3 2 34 34 H 0.97004 * 119.99531 * 359.97438 * 8 6 5 35 35 H 1.08995 * 110.99954 * 35.78980 * 11 9 8 36 36 H 1.08999 * 111.00096 * 271.93768 * 11 9 8 37 37 H 1.09000 * 110.36814 * 204.15140 * 12 11 9 38 38 H 1.09003 * 110.46002 * 81.87945 * 12 11 9 39 39 H 0.96996 * 120.00123 * 180.02562 * 17 16 14 40 40 H 1.09005 * 109.46367 * 61.45510 * 24 22 13 41 41 H 1.08999 * 109.47297 * 301.45841 * 24 22 13 42 42 H 1.08995 * 109.47388 * 181.45251 * 24 22 13 43 43 H 1.08991 * 109.47468 * 90.02176 * 27 26 25 44 44 H 1.09005 * 109.46540 * 210.01979 * 27 26 25 45 45 H 1.08999 * 109.46804 * 330.01652 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2161 2.2076 1.0861 5 6 2.6937 3.4410 0.5832 6 6 3.0445 4.6368 1.3761 7 8 2.9270 4.6199 2.5861 8 7 3.4949 5.7468 0.7583 9 6 3.8434 6.9326 1.5448 10 1 3.2163 7.0053 2.4334 11 6 5.3455 6.9119 1.9331 12 6 5.6440 8.4225 2.1015 13 7 4.8520 9.0835 1.0483 14 6 5.1215 10.3077 0.4969 15 1 4.6842 10.5804 -0.4522 16 6 5.9566 11.1980 1.1577 17 7 6.5687 12.1493 0.4850 18 14 6.2116 11.0460 3.0021 19 1 7.2785 10.0495 3.2737 20 1 6.6123 12.3639 3.5567 21 1 4.9466 10.6037 3.6419 22 6 3.7257 8.2104 0.6874 23 1 3.7784 7.9555 -0.3711 24 6 2.4023 8.9176 0.9867 25 7 2.7712 3.3181 -0.7268 26 7 2.3886 2.1445 -1.0830 27 6 2.3456 1.6608 -2.4651 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0346 1.9490 2.1189 34 1 3.5889 5.7601 -0.2070 35 1 5.9494 6.4809 1.1346 36 1 5.4995 6.3763 2.8698 37 1 6.7065 8.6178 1.9562 38 1 5.3272 8.7660 3.0863 39 1 7.1526 12.7712 0.9467 40 1 2.3321 9.8255 0.3875 41 1 2.3598 9.1763 2.0447 42 1 1.5725 8.2550 0.7410 43 1 3.2997 1.1986 -2.7182 44 1 1.5472 0.9258 -2.5681 45 1 2.1577 2.4980 -3.1374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089080096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:32 Heat of formation + Delta-G solvation = 65.353540 kcal Electronic energy + Delta-G solvation = -25253.760036 eV Core-core repulsion = 21694.767239 eV Total energy + Delta-G solvation = -3558.992797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.88961 -39.53792 -37.71312 -34.79296 -34.02597 -33.61105 -32.04015 -30.64198 -29.74851 -29.28987 -27.67305 -25.08345 -24.04176 -23.88025 -22.95948 -21.17764 -20.79541 -19.99731 -19.15074 -17.37355 -16.83009 -16.58034 -16.52348 -15.90511 -15.00202 -14.96669 -14.60803 -14.41626 -14.34727 -13.77514 -13.61304 -13.39509 -13.21167 -12.96199 -12.91142 -12.76035 -12.63040 -12.08116 -12.04054 -11.79471 -11.60440 -11.50895 -11.13792 -10.95159 -10.84366 -10.71894 -10.41488 -10.13654 -9.93688 -9.88000 -9.39371 -9.30564 -9.13768 -8.74573 -8.59242 -7.03604 -5.90923 -3.21411 1.48906 1.93299 2.20995 3.30429 3.40225 3.50033 3.53580 3.56614 4.07955 4.18320 4.48620 4.59439 4.65166 4.69393 4.80988 4.93521 4.97314 5.06030 5.14116 5.22699 5.29719 5.33749 5.38875 5.44198 5.49373 5.67636 5.70662 5.77905 5.92628 6.01181 6.11863 6.22177 6.25842 6.37442 6.47696 6.52270 6.54727 6.68343 6.79920 6.87214 7.04648 7.57859 7.74481 7.85504 8.34142 8.37803 8.86551 9.72549 10.20612 11.25063 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.031421 B = 0.002915 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.919408 B = 9602.263888 C = 9924.569930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C 0.009 3.991 4 C -0.176 4.176 5 C -0.010 4.010 6 C 0.603 3.397 7 O -0.536 6.536 8 N -0.702 5.702 9 C 0.134 3.866 10 H 0.100 0.900 11 C -0.140 4.140 12 C 0.112 3.888 13 N -0.601 5.601 14 C -0.236 4.236 15 H 0.092 0.908 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 0.881 3.119 19 H -0.285 1.285 20 H -0.303 1.303 21 H -0.275 1.275 22 C 0.155 3.845 23 H 0.047 0.953 24 C -0.155 4.155 25 N -0.260 5.260 26 N -0.282 5.282 27 C 0.085 3.915 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.088 -26.719 -4.621 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.115 4.115 4 C -0.204 4.204 5 C -0.170 4.170 6 C 0.387 3.613 7 O -0.411 6.411 8 N -0.352 5.352 9 C 0.029 3.971 10 H 0.117 0.883 11 C -0.180 4.180 12 C -0.014 4.014 13 N -0.327 5.327 14 C -0.363 4.363 15 H 0.110 0.890 16 C -0.176 4.176 17 N -0.553 5.553 18 Si 0.711 3.289 19 H -0.212 1.212 20 H -0.231 1.231 21 H -0.201 1.201 22 C 0.048 3.952 23 H 0.065 0.935 24 C -0.215 4.215 25 N -0.096 5.096 26 N -0.070 5.070 27 C -0.056 4.056 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.747 -25.917 -4.895 28.480 hybrid contribution 0.057 -0.308 1.209 1.249 sum -10.690 -26.224 -3.686 28.558 Atomic orbital electron populations 1.21777 0.94022 1.02171 1.02706 1.20102 0.96428 0.88776 1.03856 1.21372 1.06241 0.96967 0.86888 1.21497 1.06929 0.92380 0.99605 1.21948 1.08350 0.96891 0.89803 1.16871 0.76889 0.81183 0.86328 1.90785 1.54440 1.82747 1.13153 1.45872 1.65450 1.12639 1.11225 1.22171 0.96322 0.83652 0.94947 0.88253 1.23142 0.95572 0.97767 1.01511 1.21959 0.96993 0.90011 0.92421 1.44818 1.25170 1.18367 1.44381 1.18581 1.26719 0.89116 1.01899 0.89002 1.24979 0.98504 0.96376 0.97783 1.69835 1.30327 1.20114 1.35042 0.87006 0.78167 0.75522 0.88170 1.21188 1.23138 1.20109 1.21086 0.88782 0.88907 0.96432 0.93532 1.22202 0.96624 1.00741 1.01890 1.73558 1.18296 1.02690 1.15034 1.45306 1.45671 1.08265 1.07795 1.22158 1.04127 1.01623 0.77664 0.91797 0.92780 0.91742 0.90765 0.89087 0.82168 0.75874 0.90892 0.91161 0.91960 0.95446 0.92750 0.91989 0.93021 0.94038 0.89692 0.88808 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.05 -0.28 6.00 -27.88 -0.17 -0.44 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.11 10.73 -39.37 -0.42 -2.53 16 5 C -0.01 -0.14 7.13 -82.77 -0.59 -0.73 16 6 C 0.60 9.92 7.83 -12.39 -0.10 9.82 16 7 O -0.54 -10.27 16.57 5.30 0.09 -10.18 16 8 N -0.70 -11.09 5.17 -53.01 -0.27 -11.36 16 9 C 0.13 2.41 2.84 -66.10 -0.19 2.22 16 10 H 0.10 1.89 7.26 -51.93 -0.38 1.51 16 11 C -0.14 -2.62 6.77 -24.59 -0.17 -2.78 16 12 C 0.11 2.51 4.70 -2.53 -0.01 2.50 16 13 N -0.60 -14.57 2.94 -162.57 -0.48 -15.05 16 14 C -0.24 -6.66 10.17 -15.06 -0.15 -6.82 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 16 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 17 N -0.91 -28.20 13.97 55.49 0.78 -27.43 16 18 Si 0.88 23.00 24.27 -169.99 -4.13 18.88 16 19 H -0.28 -7.18 6.49 56.52 0.37 -6.82 16 20 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 21 H -0.28 -7.13 6.66 56.52 0.38 -6.75 16 22 C 0.16 3.10 3.48 -66.95 -0.23 2.86 16 23 H 0.05 0.91 7.72 -51.93 -0.40 0.51 16 24 C -0.16 -2.94 9.14 37.16 0.34 -2.60 16 25 N -0.26 -3.32 11.67 33.42 0.39 -2.93 16 26 N -0.28 -2.71 3.70 -63.85 -0.24 -2.94 16 27 C 0.08 0.40 10.89 59.85 0.65 1.06 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.26 7.43 -51.93 -0.39 -0.13 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.41 5.85 8.10 -40.82 -0.33 5.52 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.48 6.64 -51.93 -0.34 1.13 16 38 H 0.03 0.65 5.57 -51.93 -0.29 0.36 16 39 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 40 H 0.06 1.24 8.03 -51.93 -0.42 0.82 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.21 7.45 -51.93 -0.39 -0.18 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -34.90 363.75 -6.85 -41.75 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.20 Total: 1.44 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.27 Total: 2.35 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.18 Total: -59.71 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.13 Total: 18.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.90 -6.85 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089080096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.103 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds