Wall clock time and date at job start Fri Apr 10 2020 17:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 C 1.50702 * 109.47059 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99283 * 269.97275 * 4 3 2 6 6 N 1.39935 * 108.90003 * 179.76698 * 5 4 3 7 7 H 0.96998 * 125.75472 * 180.27595 * 6 5 4 8 8 C 1.34258 * 108.49136 * 0.43452 * 6 5 4 9 9 C 1.38054 * 107.41520 * 359.57809 * 8 6 5 10 10 C 1.47421 * 126.41174 * 180.26178 * 9 8 6 11 11 O 1.21602 * 119.99937 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00515 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00176 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46804 * 179.97438 * 13 12 10 15 15 C 1.53782 * 113.61593 * 274.13586 * 14 13 12 16 16 C 1.53952 * 87.01847 * 220.05114 * 15 14 13 17 17 N 1.46500 * 113.53669 * 270.81015 * 16 15 14 18 18 C 1.36936 * 120.00363 * 252.49747 * 17 16 15 19 19 H 1.08000 * 119.99581 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00291 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99732 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47561 * 59.99281 * 22 20 18 24 24 H 1.48500 * 109.47174 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46792 * 299.99047 * 22 20 18 26 26 C 1.53778 * 87.11461 * 25.36493 * 16 15 14 27 27 H 1.09008 * 109.46984 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47334 * 299.99794 * 1 2 3 29 29 H 1.08998 * 109.47183 * 60.00156 * 1 2 3 30 30 H 1.09000 * 109.47334 * 240.00206 * 2 1 3 31 31 H 1.08998 * 109.47183 * 119.99844 * 2 1 3 32 32 H 1.08998 * 109.47206 * 60.00650 * 3 2 1 33 33 H 1.09002 * 109.47460 * 300.00108 * 3 2 1 34 34 H 1.08002 * 126.29527 * 179.84921 * 8 6 5 35 35 H 0.97000 * 119.99526 * 359.97438 * 12 10 9 36 36 H 1.08991 * 109.46974 * 300.00073 * 13 12 10 37 37 H 1.09000 * 109.47030 * 60.00136 * 13 12 10 38 38 H 1.08993 * 112.84720 * 45.33857 * 14 13 12 39 39 H 1.09001 * 113.61295 * 334.57322 * 15 14 13 40 40 H 1.08998 * 113.61185 * 105.46995 * 15 14 13 41 41 H 1.08999 * 113.73828 * 139.94496 * 16 15 14 42 42 H 0.97003 * 119.99867 * 72.50205 * 17 16 15 43 43 H 0.97001 * 119.99521 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61897 * 220.09325 * 26 16 15 45 45 H 1.08997 * 113.61339 * 89.18122 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3131 1.4432 1.0564 6 7 5.6508 1.4375 0.6457 7 1 6.4236 1.4330 1.2318 8 6 5.6842 1.4430 -0.6965 9 6 4.3776 1.4424 -1.1423 10 6 3.9325 1.4419 -2.5477 11 8 2.7450 1.4409 -2.8094 12 7 4.8417 1.4425 -3.5427 13 6 4.3994 1.4414 -4.9393 14 6 5.6206 1.4430 -5.8610 15 6 6.1714 2.8491 -6.1515 16 6 6.3891 2.3770 -7.6005 17 7 7.7002 1.7630 -7.8250 18 6 8.6575 2.4343 -8.5378 19 1 8.4459 3.4161 -8.9348 20 6 9.8996 1.8523 -8.7510 21 7 10.1573 0.6555 -8.2676 22 14 11.2058 2.7683 -9.7227 23 1 11.5219 4.0495 -9.0417 24 1 12.4335 1.9372 -9.8075 25 1 10.7005 3.0466 -11.0911 26 6 5.2651 1.3567 -7.3547 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.5702 1.4431 -1.3140 35 1 5.7890 1.4436 -3.3339 36 1 3.8009 0.5507 -5.1301 37 1 3.7988 2.3306 -5.1309 38 1 6.3848 0.7298 -5.5522 39 1 5.4255 3.6383 -6.0567 40 1 7.0965 3.0738 -5.6208 41 1 6.1400 3.1290 -8.3492 42 1 7.8901 0.8810 -7.4688 43 1 11.0254 0.2490 -8.4162 44 1 5.4596 0.3783 -7.7940 45 1 4.2710 1.7372 -7.5896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091109719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:53 Heat of formation + Delta-G solvation = 47.508952 kcal Electronic energy + Delta-G solvation = -24402.823068 eV Core-core repulsion = 20843.056471 eV Total energy + Delta-G solvation = -3559.766597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66318 -39.37435 -38.30559 -35.48916 -34.49516 -33.21758 -31.82289 -30.94187 -29.96504 -27.49508 -26.97993 -25.06883 -23.89521 -23.10479 -22.14482 -21.68514 -20.44797 -19.76394 -18.80484 -18.21443 -17.29836 -16.47109 -15.76134 -15.51371 -15.26143 -14.98319 -14.67619 -14.60893 -14.15149 -14.05949 -13.75397 -13.38204 -13.17760 -13.12212 -12.88386 -12.28221 -12.12850 -11.92581 -11.70226 -11.42323 -11.39710 -11.19964 -11.05880 -10.85537 -10.74743 -10.49546 -10.23248 -10.08973 -9.79039 -9.71869 -9.71179 -9.45896 -9.15032 -8.92034 -8.81214 -7.03147 -5.84013 -3.12916 1.26882 1.95829 2.42100 3.31351 3.39830 3.42215 3.44559 3.45258 4.21862 4.38803 4.52919 4.82570 4.93527 4.97510 5.05730 5.08160 5.12246 5.18129 5.30172 5.35824 5.42798 5.59684 5.63437 5.66647 5.72027 5.74857 5.87048 5.88773 5.98264 6.11237 6.12161 6.17654 6.21230 6.27693 6.36430 6.47740 6.59434 6.72681 6.80328 6.89650 7.02741 7.26423 7.61951 7.65637 8.32828 8.35407 9.45976 10.03703 10.37893 11.38356 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.002465 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.675892 B =11354.223653 C =12189.231046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.045 4.045 4 C 0.138 3.862 5 N -0.301 5.301 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.106 3.894 9 C -0.285 4.285 10 C 0.590 3.410 11 O -0.544 6.544 12 N -0.723 5.723 13 C 0.134 3.866 14 C -0.120 4.120 15 C -0.168 4.168 16 C 0.167 3.833 17 N -0.706 5.706 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.148 4.148 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.187 0.813 35 H 0.398 0.602 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 0.197 17.631 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.084 4.084 4 C -0.030 4.030 5 N -0.123 5.123 6 N -0.166 5.166 7 H 0.289 0.711 8 C -0.047 4.047 9 C -0.300 4.300 10 C 0.377 3.623 11 O -0.422 6.422 12 N -0.374 5.374 13 C 0.011 3.989 14 C -0.138 4.138 15 C -0.209 4.209 16 C 0.054 3.946 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.187 4.187 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.204 0.796 35 H 0.231 0.769 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.694 0.301 18.565 23.071 hybrid contribution 2.056 0.139 -0.790 2.207 sum -11.638 0.440 17.775 21.250 Atomic orbital electron populations 1.21736 0.95336 1.01645 1.01944 1.21362 0.95978 0.95421 1.02156 1.20228 0.85288 0.98710 1.04168 1.22473 0.97086 0.94801 0.88674 1.77161 0.86227 1.26380 1.22504 1.46113 1.07854 1.57125 1.05505 0.71136 1.23241 0.99188 0.96582 0.85714 1.20364 0.92051 1.22798 0.94817 1.17231 0.85696 0.75905 0.83456 1.90731 1.16262 1.50961 1.84269 1.45897 1.09501 1.75524 1.06459 1.21450 0.96865 1.01769 0.78866 1.22708 0.96442 0.99708 0.94985 1.23907 1.00189 0.94547 1.02263 1.21098 0.86171 0.93838 0.93444 1.42164 1.08881 1.19755 1.63632 1.19249 0.92399 0.99687 1.25987 0.91048 1.24761 0.97974 0.96833 1.01331 1.69652 1.23012 1.15306 1.50175 0.86245 0.81204 0.78662 0.79935 1.21242 1.21697 1.21173 1.23435 0.99691 1.01436 0.94171 0.92747 0.92872 0.92215 0.91432 0.92370 0.90702 0.87959 0.79566 0.76859 0.91807 0.91556 0.88995 0.91383 0.91605 0.91987 0.78130 0.93404 0.91344 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.15 0.37 -0.88 16 2 C -0.11 -1.10 5.92 -26.74 -0.16 -1.26 16 3 C -0.04 -0.48 5.25 -27.88 -0.15 -0.63 16 4 C 0.14 1.63 6.52 -82.02 -0.53 1.09 16 5 N -0.30 -3.39 12.63 33.90 0.43 -2.96 16 6 N -0.46 -3.70 7.29 30.85 0.22 -3.47 16 7 H 0.44 1.97 8.96 -182.72 -1.64 0.33 16 8 C 0.11 0.86 11.52 -16.56 -0.19 0.67 16 9 C -0.29 -3.26 6.13 -105.07 -0.64 -3.91 16 10 C 0.59 7.79 7.81 -12.52 -0.10 7.69 16 11 O -0.54 -8.67 14.92 5.28 0.08 -8.59 16 12 N -0.72 -8.50 5.54 -61.38 -0.34 -8.84 16 13 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 14 C -0.12 -1.70 3.62 -89.80 -0.33 -2.03 16 15 C -0.17 -2.67 7.44 -25.83 -0.19 -2.87 16 16 C 0.17 3.15 4.57 -67.03 -0.31 2.85 16 17 N -0.71 -16.93 5.31 -52.55 -0.28 -17.21 16 18 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 22 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.15 -2.29 7.39 -25.92 -0.19 -2.48 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.22 6.56 -51.93 -0.34 0.88 16 34 H 0.19 0.86 7.46 -52.49 -0.39 0.47 16 35 H 0.40 3.86 7.40 -40.82 -0.30 3.56 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 42 H 0.38 9.75 7.90 -40.82 -0.32 9.43 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -32.91 374.49 -9.66 -42.57 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.43 Total: 9.84 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.69 Total: -7.17 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.76 Total: -59.08 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.91 -9.66 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091109719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.075 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds