Wall clock time and date at job start Fri Apr 10 2020 17:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 C 1.50702 * 109.47059 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99283 * 269.97275 * 4 3 2 6 6 N 1.39935 * 108.90003 * 179.76698 * 5 4 3 7 7 H 0.96998 * 125.75472 * 180.27595 * 6 5 4 8 8 C 1.34258 * 108.49136 * 0.43452 * 6 5 4 9 9 C 1.38054 * 107.41520 * 359.57809 * 8 6 5 10 10 C 1.47421 * 126.41174 * 180.26178 * 9 8 6 11 11 O 1.21602 * 119.99937 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00515 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00176 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46804 * 179.97438 * 13 12 10 15 15 C 1.53782 * 113.61593 * 274.13586 * 14 13 12 16 16 C 1.53952 * 87.01847 * 220.05114 * 15 14 13 17 17 N 1.46500 * 113.53669 * 270.81015 * 16 15 14 18 18 C 1.36936 * 120.00363 * 252.49747 * 17 16 15 19 19 H 1.08000 * 119.99581 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00291 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99732 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47561 * 59.99281 * 22 20 18 24 24 H 1.48500 * 109.47174 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46792 * 299.99047 * 22 20 18 26 26 C 1.53778 * 87.11461 * 25.36493 * 16 15 14 27 27 H 1.09008 * 109.46984 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47334 * 299.99794 * 1 2 3 29 29 H 1.08998 * 109.47183 * 60.00156 * 1 2 3 30 30 H 1.09000 * 109.47334 * 240.00206 * 2 1 3 31 31 H 1.08998 * 109.47183 * 119.99844 * 2 1 3 32 32 H 1.08998 * 109.47206 * 60.00650 * 3 2 1 33 33 H 1.09002 * 109.47460 * 300.00108 * 3 2 1 34 34 H 1.08002 * 126.29527 * 179.84921 * 8 6 5 35 35 H 0.97000 * 119.99526 * 359.97438 * 12 10 9 36 36 H 1.08991 * 109.46974 * 300.00073 * 13 12 10 37 37 H 1.09000 * 109.47030 * 60.00136 * 13 12 10 38 38 H 1.08993 * 112.84720 * 45.33857 * 14 13 12 39 39 H 1.09001 * 113.61295 * 334.57322 * 15 14 13 40 40 H 1.08998 * 113.61185 * 105.46995 * 15 14 13 41 41 H 1.08999 * 113.73828 * 139.94496 * 16 15 14 42 42 H 0.97003 * 119.99867 * 72.50205 * 17 16 15 43 43 H 0.97001 * 119.99521 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61897 * 220.09325 * 26 16 15 45 45 H 1.08997 * 113.61339 * 89.18122 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3131 1.4432 1.0564 6 7 5.6508 1.4375 0.6457 7 1 6.4236 1.4330 1.2318 8 6 5.6842 1.4430 -0.6965 9 6 4.3776 1.4424 -1.1423 10 6 3.9325 1.4419 -2.5477 11 8 2.7450 1.4409 -2.8094 12 7 4.8417 1.4425 -3.5427 13 6 4.3994 1.4414 -4.9393 14 6 5.6206 1.4430 -5.8610 15 6 6.1714 2.8491 -6.1515 16 6 6.3891 2.3770 -7.6005 17 7 7.7002 1.7630 -7.8250 18 6 8.6575 2.4343 -8.5378 19 1 8.4459 3.4161 -8.9348 20 6 9.8996 1.8523 -8.7510 21 7 10.1573 0.6555 -8.2676 22 14 11.2058 2.7683 -9.7227 23 1 11.5219 4.0495 -9.0417 24 1 12.4335 1.9372 -9.8075 25 1 10.7005 3.0466 -11.0911 26 6 5.2651 1.3567 -7.3547 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.5702 1.4431 -1.3140 35 1 5.7890 1.4436 -3.3339 36 1 3.8009 0.5507 -5.1301 37 1 3.7988 2.3306 -5.1309 38 1 6.3848 0.7298 -5.5522 39 1 5.4255 3.6383 -6.0567 40 1 7.0965 3.0738 -5.6208 41 1 6.1400 3.1290 -8.3492 42 1 7.8901 0.8810 -7.4688 43 1 11.0254 0.2490 -8.4162 44 1 5.4596 0.3783 -7.7940 45 1 4.2710 1.7372 -7.5896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091109719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:51 Heat of formation + Delta-G solvation = 25.027145 kcal Electronic energy + Delta-G solvation = -24403.797952 eV Core-core repulsion = 20843.056471 eV Total energy + Delta-G solvation = -3560.741481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.43869 -40.51883 -39.54027 -36.33203 -35.78572 -34.86425 -32.57806 -32.23835 -31.37418 -28.56396 -27.92034 -26.39067 -25.70080 -24.13087 -23.05986 -22.78538 -21.34719 -20.64745 -19.87814 -19.42174 -19.11415 -17.41230 -16.88366 -16.57823 -16.44592 -16.05350 -15.87403 -15.58549 -15.44203 -15.35819 -14.81006 -14.63303 -14.48270 -14.16798 -13.91630 -13.66941 -13.23749 -12.90951 -12.88710 -12.86732 -12.58561 -12.45538 -12.18562 -12.16419 -12.04512 -11.97947 -11.58365 -11.48042 -11.42749 -10.95690 -10.84688 -10.66531 -10.52834 -10.09870 -9.70550 -8.97044 -7.93517 -5.21211 0.54255 1.08738 1.49480 1.51494 1.57540 1.79345 2.35656 2.48335 2.57417 3.39074 3.44985 3.73214 3.76829 3.85824 3.89446 4.11767 4.16299 4.21299 4.24153 4.36853 4.37484 4.44267 4.48210 4.60280 4.79772 4.84178 4.87663 4.90283 4.98179 5.01091 5.04922 5.13725 5.16699 5.34291 5.34984 5.40767 5.42927 5.46599 5.53637 5.62648 5.71011 6.24841 6.30402 6.48378 6.71796 7.35559 7.36732 8.13312 8.35652 9.29456 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.002465 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.675892 B =11354.223653 C =12189.231046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.043 4.043 4 C 0.124 3.876 5 N -0.323 5.323 6 N -0.448 5.448 7 H 0.460 0.540 8 C 0.132 3.868 9 C -0.318 4.318 10 C 0.590 3.410 11 O -0.578 6.578 12 N -0.716 5.716 13 C 0.144 3.856 14 C -0.100 4.100 15 C -0.152 4.152 16 C 0.143 3.857 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.280 1.280 26 C -0.136 4.136 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.226 0.774 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.057 0.943 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.984 0.979 18.455 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.082 4.082 4 C -0.044 4.044 5 N -0.145 5.145 6 N -0.153 5.153 7 H 0.309 0.691 8 C -0.023 4.023 9 C -0.333 4.333 10 C 0.378 3.622 11 O -0.459 6.459 12 N -0.367 5.367 13 C 0.020 3.980 14 C -0.119 4.119 15 C -0.192 4.192 16 C 0.033 3.967 17 N -0.357 5.357 18 C -0.373 4.373 19 H 0.093 0.907 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.800 3.200 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.206 1.206 26 C -0.175 4.175 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.242 0.758 35 H 0.245 0.755 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.676 1.119 19.422 23.780 hybrid contribution 2.016 -0.069 -1.022 2.261 sum -11.660 1.050 18.399 21.808 Atomic orbital electron populations 1.21718 0.94126 1.02275 1.02228 1.21294 0.97015 0.94833 1.01178 1.20187 0.85329 0.98947 1.03757 1.22640 0.97572 0.95055 0.89108 1.77102 0.87532 1.27203 1.22701 1.46157 1.07529 1.55714 1.05924 0.69136 1.23734 0.99201 0.93503 0.85828 1.20337 0.93530 1.25632 0.93818 1.17467 0.85292 0.75165 0.84254 1.90711 1.17700 1.52675 1.84846 1.45771 1.10012 1.75122 1.05780 1.21252 0.95861 1.01702 0.79175 1.22484 0.96549 0.98294 0.94601 1.23717 1.00184 0.96069 0.99238 1.21429 0.85155 0.95047 0.95104 1.42285 1.10326 1.19462 1.63658 1.19624 0.92993 0.99723 1.25000 0.90673 1.25516 1.00153 0.97835 1.03176 1.69799 1.23129 1.16841 1.52115 0.85250 0.78433 0.77537 0.78768 1.20420 1.22320 1.20600 1.23347 0.99551 0.99853 0.94761 0.91947 0.91575 0.92914 0.93458 0.92118 0.89715 0.89592 0.75778 0.75544 0.92040 0.91538 0.89834 0.89212 0.93073 0.92428 0.79297 0.94051 0.92456 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.10 -2.10 5.92 30.59 0.18 -1.92 16 3 C -0.04 -0.93 5.25 29.85 0.16 -0.77 16 4 C 0.12 2.86 6.52 43.52 0.28 3.14 16 5 N -0.32 -6.85 12.63 -46.67 -0.59 -7.44 16 6 N -0.45 -6.10 7.29 -56.31 -0.41 -6.51 16 7 H 0.46 2.81 8.96 -213.43 -1.91 0.90 16 8 C 0.13 1.80 11.52 84.28 0.97 2.77 16 9 C -0.32 -6.89 6.13 -20.15 -0.12 -7.01 16 10 C 0.59 15.05 7.81 86.66 0.68 15.72 16 11 O -0.58 -18.46 14.92 -4.04 -0.06 -18.52 16 12 N -0.72 -15.56 5.54 -466.38 -2.59 -18.15 16 13 C 0.14 3.44 5.50 86.38 0.48 3.91 16 14 C -0.10 -2.69 3.62 -10.26 -0.04 -2.72 16 15 C -0.15 -4.54 7.44 31.18 0.23 -4.31 16 16 C 0.14 5.24 4.57 45.58 0.21 5.45 16 17 N -0.72 -34.48 5.31 -320.18 -1.70 -36.18 16 18 C -0.24 -12.97 9.97 84.03 0.84 -12.13 16 19 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.97 -57.38 13.06 21.65 0.28 -57.10 16 22 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C -0.14 -3.99 7.39 31.12 0.23 -3.76 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 2.13 6.56 -2.39 -0.02 2.11 16 34 H 0.23 1.17 7.46 -2.91 -0.02 1.15 16 35 H 0.41 6.94 7.40 -92.71 -0.69 6.26 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.63 7.87 -2.39 -0.02 1.62 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.09 2.33 7.92 -2.39 -0.02 2.31 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 42 H 0.37 19.20 7.90 -92.71 -0.73 18.47 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 45 H 0.10 2.53 8.10 -2.39 -0.02 2.51 16 Total: -1.00 -71.60 374.49 -0.08 -71.68 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -2.31 Total: 32.27 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.27 Total: -6.98 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.00 Total: -125.38 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.06 Total: -18.52 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -71.60 -0.08 -71.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091109719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.705 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds