Wall clock time and date at job start Fri Apr 10 2020 17:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47245 * 2 1 4 4 C 1.50702 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.35363 * 126.38390 * 84.99831 * 4 3 2 6 6 C 1.41505 * 105.50137 * 179.97438 * 5 4 3 7 7 C 1.47705 * 126.51668 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00114 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00026 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00377 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47365 * 179.97438 * 10 9 7 12 12 C 1.53777 * 113.61274 * 274.13735 * 11 10 9 13 13 C 1.53959 * 87.01747 * 220.05001 * 12 11 10 14 14 N 1.46510 * 113.53438 * 270.80940 * 13 12 11 15 15 C 1.36932 * 120.00000 * 252.49352 * 14 13 12 16 16 H 1.08004 * 120.00031 * 0.02562 * 15 14 13 17 17 C 1.38805 * 120.00025 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00099 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00293 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46766 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47000 * 120.00304 * 19 17 15 22 22 H 1.48501 * 109.47131 * 240.00193 * 19 17 15 23 23 C 1.53779 * 113.61241 * 176.52799 * 11 10 9 24 24 N 1.31809 * 106.96096 * 0.02562 * 6 5 4 25 25 N 1.28462 * 110.07367 * 359.97438 * 24 6 5 26 26 H 0.97002 * 124.87791 * 179.97438 * 25 24 6 27 27 H 1.09002 * 109.47192 * 299.99956 * 1 2 3 28 28 H 1.09000 * 109.47266 * 59.99611 * 1 2 3 29 29 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46596 * 239.99625 * 2 1 3 31 31 H 1.09000 * 109.46545 * 120.00201 * 2 1 3 32 32 H 1.09002 * 109.46990 * 59.99920 * 3 2 1 33 33 H 1.09001 * 109.46792 * 299.99797 * 3 2 1 34 34 H 1.08000 * 127.25177 * 0.24316 * 5 4 3 35 35 H 0.97002 * 120.00100 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.46849 * 299.99902 * 10 9 7 37 37 H 1.08996 * 109.47060 * 59.99473 * 10 9 7 38 38 H 1.08999 * 112.84934 * 45.33352 * 11 10 9 39 39 H 1.09002 * 113.61321 * 334.56139 * 12 11 10 40 40 H 1.08999 * 113.61823 * 105.46963 * 12 11 10 41 41 H 1.09003 * 113.74424 * 139.94603 * 13 12 11 42 42 H 0.96997 * 119.99680 * 72.49670 * 14 13 12 43 43 H 0.97001 * 120.00024 * 180.02562 * 18 17 15 44 44 H 1.09003 * 113.61579 * 254.52591 * 23 11 10 45 45 H 1.08997 * 113.61921 * 25.43387 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3496 1.3475 -1.0866 6 6 5.6719 1.3920 -0.5847 7 6 6.9159 1.3234 -1.3781 8 8 6.8602 1.2183 -2.5880 9 7 8.1127 1.3774 -0.7608 10 6 9.3466 1.3099 -1.5477 11 6 10.5538 1.3921 -0.6113 12 6 10.9764 2.8321 -0.2760 13 6 12.4327 2.3485 -0.4014 14 7 12.9903 1.8397 0.8543 15 6 13.9268 2.5719 1.5339 16 1 14.2541 3.5247 1.1445 17 6 14.4548 2.0902 2.7238 18 7 14.0556 0.9293 3.1986 19 14 15.7319 3.0893 3.6513 20 1 16.0075 4.3479 2.9129 21 1 15.2181 3.4133 5.0064 22 1 16.9847 2.3013 3.7723 23 6 11.9040 1.2448 -1.3326 24 7 5.5823 1.5062 0.7254 25 7 4.3485 1.5372 1.0819 26 1 4.0375 1.6166 1.9973 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 4.0449 1.2610 -2.1191 35 1 8.1571 1.4608 0.2047 36 1 9.3760 0.3691 -2.0973 37 1 9.3752 2.1424 -2.2506 38 1 10.4545 0.7510 0.2646 39 1 10.6909 3.5592 -1.0363 40 1 10.7040 3.1436 0.7325 41 1 13.0906 3.0613 -0.8986 42 1 12.6961 0.9842 1.2041 43 1 14.4243 0.5928 4.0303 44 1 12.3794 0.2765 -1.1759 45 1 11.8725 1.5371 -2.3822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091174329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:57 Heat of formation + Delta-G solvation = 48.563316 kcal Electronic energy + Delta-G solvation = -23869.596997 eV Core-core repulsion = 20309.876121 eV Total energy + Delta-G solvation = -3559.720876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.93170 -39.49587 -38.33583 -35.80687 -34.58607 -33.18505 -32.10436 -31.29893 -30.11312 -27.60201 -26.81544 -25.01551 -24.25184 -23.33007 -22.40037 -21.54548 -21.28262 -20.05609 -18.31954 -18.00049 -17.36579 -16.84491 -16.04768 -15.81361 -15.55794 -15.07505 -14.76893 -14.46349 -14.12274 -14.01495 -13.93804 -13.59773 -13.42899 -13.13599 -12.85825 -12.70091 -12.21972 -12.00175 -11.87443 -11.79511 -11.35648 -11.30409 -11.04240 -10.99010 -10.84894 -10.45885 -10.26834 -10.11506 -9.81015 -9.67215 -9.63012 -9.43419 -9.23043 -8.91743 -8.85143 -6.97864 -5.79318 -3.08094 1.42494 1.85427 2.57020 3.25240 3.40422 3.42339 3.48235 3.50421 4.15270 4.26491 4.43175 4.53159 4.57071 4.81192 4.92806 5.07210 5.12456 5.18844 5.20287 5.28046 5.29961 5.37255 5.47573 5.51114 5.55789 5.68481 5.73447 5.75077 5.78609 5.91185 6.00235 6.13500 6.16003 6.25975 6.41586 6.47901 6.63293 6.70367 6.79629 6.94440 7.08745 7.46501 7.70965 7.74052 8.25128 8.39926 9.50609 10.08749 10.42976 11.43199 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.002194 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.455250 B =12759.577918 C =13654.682158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.050 4.050 4 C 0.014 3.986 5 C -0.175 4.175 6 C -0.009 4.009 7 C 0.600 3.400 8 O -0.539 6.539 9 N -0.709 5.709 10 C 0.130 3.870 11 C -0.119 4.119 12 C -0.168 4.168 13 C 0.167 3.833 14 N -0.706 5.706 15 C -0.240 4.240 16 H 0.073 0.927 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.147 4.147 24 N -0.255 5.255 25 N -0.379 5.379 26 H 0.444 0.556 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.409 0.591 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.807 -0.340 -6.625 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.112 4.112 5 C -0.203 4.203 6 C -0.170 4.170 7 C 0.384 3.616 8 O -0.415 6.415 9 N -0.360 5.360 10 C 0.008 3.992 11 C -0.138 4.138 12 C -0.209 4.209 13 C 0.055 3.945 14 N -0.344 5.344 15 C -0.372 4.372 16 H 0.091 0.909 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.187 4.187 24 N -0.090 5.090 25 N -0.093 5.093 26 H 0.289 0.711 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.179 0.821 35 H 0.244 0.756 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.964 -0.212 -6.510 26.769 hybrid contribution -0.113 0.206 1.076 1.102 sum -26.077 -0.006 -5.434 26.637 Atomic orbital electron populations 1.21782 0.95178 1.02092 1.02010 1.21553 0.96043 0.95444 1.02955 1.20226 0.86236 0.98348 1.04093 1.21432 0.95043 1.07365 0.87353 1.21497 0.90412 1.08654 0.99772 1.21996 0.95333 1.09773 0.89880 1.16901 0.81775 0.76662 0.86308 1.90782 1.86923 1.50590 1.13194 1.45935 1.05263 1.73105 1.11709 1.21533 0.81957 1.01824 0.93935 1.22707 0.92778 0.99669 0.98667 1.23912 1.01536 0.94343 1.01142 1.21105 0.91627 0.93882 0.87936 1.42182 1.47405 1.23199 1.21653 1.19344 1.14334 1.01175 1.02301 0.90929 1.24765 1.00622 0.97280 0.98322 1.69676 1.46632 1.19425 1.22334 0.86098 0.81126 0.79153 0.79703 1.20496 1.21899 1.21850 1.23436 0.95111 1.01291 0.98842 1.73604 1.01525 1.18821 1.15094 1.43323 1.02933 1.53185 1.09907 0.71144 0.92659 0.92375 0.92388 0.91097 0.91932 0.90571 0.88974 0.82092 0.75611 0.91600 0.91360 0.88863 0.91392 0.91503 0.91940 0.78107 0.93528 0.91306 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.20 16 2 C -0.12 -0.57 5.92 -26.73 -0.16 -0.73 16 3 C -0.05 -0.23 5.77 -27.88 -0.16 -0.39 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.18 -1.90 10.73 -39.36 -0.42 -2.33 16 6 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 7 C 0.60 9.10 7.82 -12.39 -0.10 9.01 16 8 O -0.54 -9.55 16.93 5.30 0.09 -9.46 16 9 N -0.71 -10.06 5.55 -61.29 -0.34 -10.40 16 10 C 0.13 1.87 5.50 -4.04 -0.02 1.84 16 11 C -0.12 -1.86 3.62 -89.81 -0.33 -2.19 16 12 C -0.17 -2.89 7.44 -25.83 -0.19 -3.08 16 13 C 0.17 3.30 4.57 -67.02 -0.31 2.99 16 14 N -0.71 -17.57 5.31 -52.54 -0.28 -17.85 16 15 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 16 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 19 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C -0.15 -2.40 7.39 -25.92 -0.19 -2.59 16 24 N -0.25 -3.03 11.92 33.42 0.40 -2.63 16 25 N -0.38 -3.17 6.83 33.50 0.23 -2.94 16 26 H 0.44 2.15 8.96 -190.44 -1.71 0.44 16 27 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.41 5.53 8.20 -40.82 -0.33 5.20 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 38 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.38 10.14 7.90 -40.82 -0.32 9.81 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -33.35 379.04 -10.01 -43.36 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -8.64 Total: 10.29 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.88 Total: -6.10 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.73 Total: -61.12 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.35 -10.01 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091174329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.924 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds